Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
AGAP000946-PAsnap_masked-scaffold577_size191314-processed-gene-0.29gene
AGAP000951-PBsnap_masked-scaffold370_size193435-processed-gene-0.6gene
AGAP001242-PAmaker-scaffold666_size115941-snap-gene-0.10gene
AGAP001242-PAmaker-scaffold71_size417697-snap-gene-1.3gene
AGAP001362-PAmaker-scaffold1150_size58936-snap-gene-0.17gene
AGAP001362-PAmaker-scaffold789_size96855-snap-gene-0.23gene
AGAP001504-PAmaker-scaffold303_size215788-snap-gene-1.9gene
AGAP001552-PAmaker-scaffold126_size328755-snap-gene-0.10gene
AGAP001552-PAmaker-scaffold691_size110934-snap-gene-0.35gene
AGAP001744-PAmaker-scaffold55_size446313-snap-gene-2.15gene
AGAP001862-PAmaker-scaffold19_size710362-snap-gene-6.13gene
AGAP001862-PAsnap_masked-scaffold261_size233860-processed-gene-1.1gene
AGAP001932-PAmaker-scaffold876_size86062-snap-gene-0.19gene
AGAP001935-PAmaker-scaffold730_size105374-snap-gene-0.17gene
AGAP002114-PAsnap_masked-scaffold177_size283923-processed-gene-0.10gene
AGAP002135-PBmaker-scaffold62_size438377-snap-gene-3.7gene
AGAP002236-PAmaker-scaffold2683_size13302-snap-gene-0.4gene
AGAP002357-PAmaker-scaffold97_size377342-snap-gene-0.15gene
AGAP002366-PAmaker-scaffold22_size673200-snap-gene-5.38gene
AGAP002381-PAmaker-scaffold698_size109766-snap-gene-0.16gene
AGAP002383-PAmaker-scaffold60_size442463-snap-gene-0.25gene
AGAP003128-PAmaker-scaffold707_size108565-snap-gene-0.14gene
AGAP003204-PAmaker-scaffold300_size216557-snap-gene-0.13gene
AGAP003487-PAmaker-scaffold269_size230758-snap-gene-1.30gene
AGAP003636-PAmaker-scaffold455_size166772-snap-gene-0.32gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
Downloads