Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
AGAP011530-PAmaker-scaffold109_size355148-snap-gene-2.27gene
AGAP011571-PAmaker-scaffold858_size87625-snap-gene-0.15gene
AGAP011637-PAsnap_masked-scaffold243_size241480-processed-gene-1.16gene
AGAP011666-PAmaker-scaffold192_size271026-snap-gene-1.18gene
AGAP011927-PAmaker-scaffold329_size204955-snap-gene-0.12gene
AGAP011936-PAmaker-scaffold1048_size67263-snap-gene-0.27gene
AGAP012241-PAsnap_masked-scaffold884_size84903-processed-gene-0.7gene
AGAP012971-PAmaker-scaffold664_size116482-snap-gene-0.18gene
AGAP013467-PAmaker-scaffold133_size323035-snap-gene-2.27gene
AGAP013467-PAmaker-scaffold664_size116482-snap-gene-0.21gene
agglutinin isolectin 1 precursormaker-scaffold180_size281610-snap-gene-0.25gene
agglutinin receptormaker-scaffold130_size324016-snap-gene-1.12gene
agmatine deiminasemaker-scaffold541_size141817-snap-gene-0.35gene
a g-specific adenine dna glycosylasemaker-scaffold190_size271632-snap-gene-0.19gene
ah receptor-interacting proteinmaker-scaffold272_size230267-snap-gene-0.22gene
aig1 familymaker-scaffold616_size123561-snap-gene-0.19gene
aig1 familymaker-scaffold685_size112133-snap-gene-0.18gene
aig1 familysnap_masked-scaffold334_size202906-processed-gene-1.3gene
akh corazonin-related peptidemaker-scaffold39_size501901-snap-gene-1.14gene
a-kinase anchor proteinmaker-scaffold1039_size68027-snap-gene-0.9gene
a-kinase anchor protein 13maker-scaffold48_size466083-snap-gene-3.24gene
a-kinase anchor protein 9-likesnap_masked-scaffold279_size225217-processed-gene-0.4gene
Akirin-2maker-scaffold732_size105256-snap-gene-0.21gene
Aladinmaker-scaffold911_size81771-snap-gene-0.22gene
alanine aminotransferase 2snap_masked-scaffold356_size197960-processed-gene-0.12gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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