Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
aldehyde dehydrogenasesnap_masked-scaffold11200_size2057-processed-gene-0.0gene
aldehyde dehydrogenasesnap_masked-scaffold11553_size2001-processed-gene-0.0gene
aldehyde dehydrogenasesnap_masked-scaffold1575_size35271-processed-gene-0.12gene
aldehyde dehydrogenasesnap_masked-scaffold2878_size11664-processed-gene-0.6gene
aldehyde dehydrogenasesnap_masked-scaffold2_size2283618-processed-gene-15.34gene
aldehyde dehydrogenasesnap_masked-scaffold418_size177226-processed-gene-0.5gene
aldehyde dehydrogenasesnap_masked-scaffold6824_size3571-processed-gene-0.1gene
aldehyde dehydrogenasesnap_masked-scaffold7494_size3156-processed-gene-0.1gene
aldehyde dehydrogenasesnap_masked-scaffold883_size84933-processed-gene-0.1gene
aldehyde dehydrogenase family 1 member l1snap_masked-scaffold56_size446035-processed-gene-3.11gene
aldehyde dehydrogenase family 9 member a1-a-likesnap_masked-scaffold317_size209118-processed-gene-1.1gene
aldehyde dehydrogenase family proteinmaker-scaffold1_size3401120-snap-gene-33.27gene
aldehyde dimeric nadp-preferring isoform x3maker-scaffold261_size233860-snap-gene-1.27gene
aldehyde mitochondrial precursormaker-scaffold48_size466083-snap-gene-3.23gene
aldehyde oxidasesnap_masked-scaffold2_size2283618-processed-gene-5.21gene
aldehyde oxidase 1 isoform x1snap_masked-scaffold380_size190731-processed-gene-0.30gene
aldehyde oxidase-likemaker-scaffold14_size734282-snap-gene-6.27gene
aldehyde reductasemaker-scaffold113_size352875-snap-gene-2.25gene
aldehyde reductasemaker-scaffold694_size110379-snap-gene-0.3gene
aldolasesnap_masked-scaffold11147_size2065-processed-gene-0.1gene
aldose 1-epimerasemaker-scaffold1145_size59447-snap-gene-0.1gene
aldose 1-epimerasemaker-scaffold37_size504123-snap-gene-4.15gene
aldose 1-epimerasemaker-scaffold671_size114370-snap-gene-0.33gene
aldose epimerasesnap_masked-scaffold3337_size9153-processed-gene-0.2gene
aliphatic sulfonate abc transporter substrate-binding proteinmaker-scaffold341_size202020-snap-gene-1.16gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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