Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
2-hydroxy-acid oxidasesnap_masked-scaffold4171_size6494-processed-gene-0.0gene
2-hydroxyacyl- lyase 1maker-scaffold818_size92908-snap-gene-0.17gene
2-hydroxyhepta- -diene- -dioate isomerasemaker-scaffold1010_size71100-snap-gene-0.2gene
2-hydroxyhepta- -diene- -dioate isomerasesnap_masked-scaffold6902_size3520-processed-gene-0.0gene
2-hydroxymuconic semialdehyde dehydrogenasemaker-scaffold2200_size18933-snap-gene-0.0gene
2-hydroxymuconic semialdehyde dehydrogenasemaker-scaffold766_size101161-snap-gene-0.0gene
2-keto-4-pentenoate hydratase 2-oxohepta-3-ene- -dioic acid hydratasesnap_masked-scaffold2_size2283618-processed-gene-21.35gene
2-keto-4-pentenoate hydratase-like proteinmaker-scaffold1449_size40816-snap-gene-0.6gene
2og-fe oxygenasemaker-scaffold309_size213625-snap-gene-1.22gene
2-oxoglutarate dehydrogenasesnap_masked-scaffold6624_size3713-processed-gene-0.0gene
2-oxoglutarate dehydrogenase componentmaker-scaffold5417_size4659-snap-gene-0.0gene
2-oxoglutarate dehydrogenase e1snap_masked-scaffold5388_size4683-processed-gene-0.1gene
2-oxoglutarate dehydrogenase e1 componentmaker-scaffold107_size358081-snap-gene-2.0gene
2-oxoglutarate dehydrogenase e1 component dhktd1-like mitochondrialmaker-scaffold275_size226830-snap-gene-0.25gene
2-oxoglutarate e1 subunitmaker-scaffold2746_size12683-snap-gene-0.0gene
2-oxoglutarate mitochondrial-like isoform x5maker-scaffold176_size284796-snap-gene-1.17gene
2-oxoisovalerate dehydrogenase subunit mitochondrial precursormaker-scaffold693_size110418-snap-gene-0.22gene
2-oxoisovalerate dehydrogenase subunit mitochondrial precursormaker-scaffold821_size92673-snap-gene-0.13gene
2 -phosphodiesterase 12-likemaker-scaffold676_size113663-snap-gene-0.29gene
2-phosphoglycerate dehydratasemaker-scaffold1105_size62356-snap-gene-0.1gene
30s ribosomal protein s1snap_masked-scaffold270_size230592-processed-gene-1.16gene
30s ribosomal protein s10maker-scaffold56_size446035-snap-gene-3.35gene
30s ribosomal protein s12snap_masked-scaffold2261_size17928-processed-gene-0.0gene
30s ribosomal protein s16snap_masked-scaffold3282_size9389-processed-gene-0.4gene
30s ribosomal protein s7snap_masked-scaffold1188_size56401-processed-gene-0.22gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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