Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
androgen-induced proliferation inhibitormaker-scaffold795_size96016-snap-gene-0.21gene
androgen-induced protein 1maker-scaffold78_size404448-snap-gene-2.11gene
angiomotin-like protein 1 isoform x2maker-scaffold470_size172058-snap-gene-0.27gene
angiopoietin-2 isoform x1maker-scaffold1103_size62544-snap-gene-0.12gene
Angiopoietin-4maker-scaffold133_size323035-snap-gene-0.20gene
angiotensin-converting enzyme-likemaker-scaffold282_size228295-snap-gene-1.21gene
anion exchangemaker-scaffold1000_size72005-snap-gene-0.9gene
anion exchangemaker-scaffold2453_size15579-snap-gene-0.8gene
anionic trypsin-1 precursormaker-scaffold1259_size52279-snap-gene-0.10gene
ankyrinmaker-scaffold205_size259573-snap-gene-1.35gene
Ankyrinmaker-scaffold309_size213625-snap-gene-0.19gene
ankyrin-1 isoform x1maker-scaffold2353_size16667-snap-gene-0.1gene
Ankyrin-3snap_masked-scaffold687_size111633-processed-gene-0.14gene
ankyrin repeat and btb poz domain-containing protein 1maker-scaffold332_size203095-snap-gene-1.24gene
ankyrin repeat and kh domain-containing protein 1maker-scaffold179_size282488-snap-gene-1.25gene
ankyrin repeat and kh domain-containing protein 1maker-scaffold566_size135349-snap-gene-0.32gene
ankyrin repeat and mynd domain-containing protein 2maker-scaffold160_size295910-snap-gene-1.40gene
ankyrin repeat and sterile alpha motif domain-containing protein 1b-like isoform x1maker-scaffold15_size728074-snap-gene-5.17gene
ankyrin repeat-containingmaker-scaffold263_size232787-snap-gene-1.25gene
ankyrin repeat containing proteinmaker-scaffold471_size162517-snap-gene-0.19gene
ankyrin repeat containing proteinmaker-scaffold853_size88743-snap-gene-0.11gene
ankyrin repeat-containing proteinmaker-scaffold224_size251237-snap-gene-0.17gene
ankyrin repeat domain 10maker-scaffold222_size251774-snap-gene-1.25gene
ankyrin repeat domain 40maker-scaffold1305_size49401-snap-gene-0.16gene
ankyrin repeat domain-containing protein 13bmaker-scaffold308_size214241-snap-gene-0.25gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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