Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
cadherin- partialsnap_masked-scaffold96_size378025-processed-gene-1.7gene
cadherin-related family member 2maker-scaffold221_size251850-snap-gene-0.12gene
cad proteinmaker-scaffold1408_size42850-snap-gene-0.11gene
caib baif -transferase family protein c7orf10 homologmaker-scaffold168_size293125-snap-gene-0.21gene
calcineurin b homologous protein 1snap_masked-scaffold238_size242079-processed-gene-0.0gene
calcineurin-binding protein cabin-1maker-scaffold105_size367834-snap-gene-2.35gene
calcineurin-like phosphoesterasemaker-scaffold645_size120276-snap-gene-0.33gene
calcineurin subunit b isoform 1maker-scaffold1553_size35894-snap-gene-0.9gene
calcineurin subunit b isoform 1snap_masked-scaffold809_size94238-processed-gene-0.4gene
calcineurin subunit b type 2maker-scaffold955_size76929-snap-gene-0.17gene
calcitonin gene-related peptide 2-likemaker-scaffold253_size237113-snap-gene-1.30gene
calcitonin gene-related peptide-receptor component proteinsnap_masked-scaffold631_size122145-processed-gene-0.26gene
calcitonin gene-related peptide type 1 receptorsnap_masked-scaffold2114_size20529-processed-gene-0.1gene
calcitonin-like diuretic hormone receptor 2maker-scaffold1179_size56971-snap-gene-0.15gene
calcitonin receptormaker-scaffold299_size217019-snap-gene-0.10gene
calcitonin receptor maker-scaffold663_size116561-snap-gene-0.12gene
calcium-activated chloride channel regulator 1maker-scaffold68_size422247-snap-gene-1.13gene
calcium-activated chloride channel regulator 2maker-scaffold403_size186359-snap-gene-0.50gene
calcium-activated potassium channelmaker-scaffold22_size673200-snap-gene-1.19gene
calcium-activated potassium channel slowpokemaker-scaffold22_size673200-snap-gene-5.42gene
calcium and integrin-binding protein 1-likemaker-scaffold394_size185225-snap-gene-0.26gene
calcium-binding and coiled-coil domain-containing protein 2 isoform x1maker-scaffold995_size72343-snap-gene-0.22gene
calcium-binding atopy-related autoantigen partialmaker-scaffold5_size1054832-snap-gene-9.22gene
calcium-binding mitochondrial carrier protein aralar1maker-scaffold541_size141817-snap-gene-0.23gene
calcium-binding proteinmaker-scaffold1658_size31987-snap-gene-0.6gene

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Cross References
External references for this organism
DatabaseAccession
PMID28369352
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