Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
carnitine dehydratasesnap_masked-scaffold6762_size3619-processed-gene-0.0gene
carnitine o-acetyltransferase isoform x2maker-scaffold795_size96016-snap-gene-0.24gene
carnitine o-palmitoyltransferase liver isoform-like isoform 1snap_masked-scaffold241_size241811-processed-gene-1.4gene
-carotene 9 -oxygenasesnap_masked-scaffold132_size323655-processed-gene-2.5gene
-carotene -monooxygenase-likemaker-scaffold386_size188734-snap-gene-0.22gene
carrier proteinsnap_masked-scaffold425_size175135-processed-gene-0.2gene
carveol dehydrogenasemaker-scaffold984_size73453-snap-gene-0.15gene
casein kinase beta subunit 1-1maker-scaffold277_size226016-snap-gene-0.18gene
casein kinase i isoform alphasnap_masked-scaffold106_size358372-processed-gene-0.1gene
casein kinase i isoform epsilonmaker-scaffold475_size161908-snap-gene-0.25gene
casein kinase i isoform epsilon-like isoform x6maker-scaffold21_size687808-snap-gene-5.38gene
casein kinase i isoform gamma-3-like isoform x3maker-scaffold947_size77696-snap-gene-0.13gene
caskin-1 isoform x2maker-scaffold452_size166894-snap-gene-0.35gene
casp1_spofr ame: fullsnap_masked-scaffold220_size252247-processed-gene-0.1gene
caspase nc-likemaker-scaffold375_size191602-snap-gene-0.26gene
caspase partialmaker-scaffold109_size355148-snap-gene-1.22gene
caspase partialmaker-scaffold44_size478958-snap-gene-2.7gene
cast multi-domain proteinmaker-scaffold638_size121162-snap-gene-0.25gene
catalasemaker-scaffold1534_size36967-snap-gene-0.3gene
catalasemaker-scaffold1729_size29843-snap-gene-0.4gene
catalasemaker-scaffold213_size254208-snap-gene-1.31gene
catalasesnap_masked-scaffold482_size159934-processed-gene-0.25gene
Catalasesnap_masked-scaffold335_size202896-processed-gene-1.3gene
catalase partialsnap_masked-scaffold335_size202896-processed-gene-1.2gene
catenin alphamaker-scaffold185_size275389-snap-gene-0.14gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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