Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
catenin delta-2maker-scaffold989_size72935-snap-gene-0.8gene
cathepsin b precursormaker-scaffold1268_size51707-snap-gene-0.12gene
cathepsin b precursorsnap_masked-scaffold1088_size63410-processed-gene-0.5gene
cathepsin dmaker-scaffold845_size89356-snap-gene-0.17gene
cathepsin f-like cysteine peptidase proteinmaker-scaffold377_size191454-snap-gene-0.29gene
cathepsin imaker-scaffold39_size501901-snap-gene-1.17gene
cathepsin k precursormaker-scaffold270_size230592-snap-gene-0.11gene
cathepsin l-likemaker-scaffold68_size422247-snap-gene-0.15gene
cation efflux protein zinc transportermaker-scaffold1101_size62595-snap-gene-0.6gene
cationic amino acid transportermaker-scaffold83_size396513-snap-gene-0.16gene
cationic amino acid transporter 3-likemaker-scaffold13_size735724-snap-gene-2.17gene
cation:proton antiportermaker-scaffold342_size201858-snap-gene-0.22gene
cation transport atpasemaker-scaffold518_size150039-snap-gene-0.16gene
cation-transporting atpase 13a3maker-scaffold982_size73714-snap-gene-0.8gene
cation transport regulator-like protein 1maker-scaffold122_size333723-snap-gene-2.31gene
cation transport regulator-like protein 1-likemaker-scaffold157_size297442-snap-gene-1.29gene
cation transport regulator-like protein 2maker-scaffold168_size293125-snap-gene-0.28gene
caudalmaker-scaffold489_size157649-snap-gene-0.11gene
Caveolin-1maker-scaffold74_size411160-snap-gene-3.19gene
cbn-lmp-2 proteinmaker-scaffold60_size442463-snap-gene-0.22gene
cbn-nas-6 proteinmaker-scaffold280_size224562-snap-gene-0.14gene
cbn-rib-2 proteinmaker-scaffold498_size154992-snap-gene-0.15gene
cbr-zyx-1 partialmaker-scaffold92_size382268-snap-gene-2.32gene
ccaat enhancer-binding protein gammamaker-scaffold183_size276960-snap-gene-1.29gene
c-c chemokine receptor type 4-likemaker-scaffold375_size191602-snap-gene-0.34gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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