Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
cytochrome c oxidase assembly protein cox19-likesnap_masked-scaffold188_size271682-processed-gene-1.12gene
cytochrome c oxidase assembly protein mitochondrialsnap_masked-scaffold589_size129586-processed-gene-0.5gene
cytochrome c oxidase polypeptide iisnap_masked-scaffold1_size3401120-processed-gene-14.7gene
cytochrome c oxidase subunit imaker-scaffold54_size448012-snap-gene-3.2gene
cytochrome c oxidase subunit iimaker-scaffold305_size215425-snap-gene-1.12gene
cytochrome c oxidase subunit iiimaker-scaffold2235_size18398-snap-gene-0.0gene
cytochrome c oxidase subunit mitochondrialmaker-scaffold91_size383040-snap-gene-1.26gene
cytochrome c oxidase subunit mitochondrial precursormaker-scaffold119_size336447-snap-gene-2.29gene
cytochrome o ubiquinol oxidasesnap_masked-scaffold1196_size56025-processed-gene-0.1gene
cytochrome oxidase subunit imaker-scaffold1053_size66761-snap-gene-0.16gene
cytochrome oxidase subunit isnap_masked-scaffold166_size294552-processed-gene-0.7gene
cytochrome oxidase subunit partialmaker-scaffold2235_size18398-snap-gene-0.4gene
cytochrome oxidase subunit partialmaker-scaffold1053_size66761-snap-gene-0.12gene
cytochrome oxidase subunit partialmaker-scaffold1053_size66761-snap-gene-0.10gene
cytochrome p450maker-scaffold832_size90819-snap-gene-0.17gene
cytochrome p450maker-scaffold530_size145801-snap-gene-0.18gene
cytochrome p450maker-scaffold1387_size43827-snap-gene-0.5gene
cytochrome P450 snap_masked-scaffold832_size90819-processed-gene-0.9gene
cytochrome p450 2aa2snap_masked-scaffold1422_size42147-processed-gene-0.1gene
cytochrome p450 2c19-like isoform x2maker-scaffold604_size126151-snap-gene-0.26gene
cytochrome p450 2j2maker-scaffold364_size194629-snap-gene-0.16gene
cytochrome p450 2j2-likemaker-scaffold93_size381549-snap-gene-1.15gene
cytochrome p450 2j3-likemaker-scaffold237_size242172-snap-gene-1.39gene
cytochrome p450 306a1 isoform x2maker-scaffold924_size80766-snap-gene-0.14gene
cytochrome p450 4v2-likemaker-scaffold146_size311726-snap-gene-1.17gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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