Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
tonb-dependent receptor plugmaker-scaffold139_size317827-snap-gene-2.25gene
topoisomerase 1bmaker-scaffold462_size163801-snap-gene-0.41gene
torso-like protein precursormaker-scaffold808_size94304-snap-gene-0.23gene
tox high mobility group box family member 4snap_masked-scaffold168_size293125-processed-gene-1.56gene
tox high mobility group box family member 4snap_masked-scaffold1523_size37540-processed-gene-0.10gene
toxin-antitoxin antitoxin familymaker-scaffold1714_size30324-snap-gene-0.10gene
tp53-regulating kinasesnap_masked-scaffold548_size139981-processed-gene-0.5gene
tpa: arylsulfatase d-likemaker-scaffold323_size206388-snap-gene-1.12gene
tpa cuticle proteinmaker-scaffold544_size141056-snap-gene-0.34gene
tpa: cuticle proteinmaker-scaffold509_size151631-snap-gene-0.14gene
tpa: cuticle proteinmaker-scaffold277_size226016-snap-gene-0.26gene
tpa_exp: arrestin 2-like protein arr2snap_masked-scaffold94_size379870-processed-gene-2.4gene
TPA: hypothetical protein BOS_6983maker-scaffold389_size186684-snap-gene-0.23gene
TPA: hypothetical protein ZEAMMB73_745836maker-scaffold886_size84816-snap-gene-0.31gene
tpa_inf: 26s proteasome regulatory complex componentmaker-scaffold514_size150699-snap-gene-0.29gene
tpa_inf: btb poz and kelch domain-containing proteinmaker-scaffold728_size105512-snap-gene-0.20gene
tpa_inf: btb poz and kelch domain-containing proteinsnap_masked-scaffold676_size113663-processed-gene-0.7gene
tpa_inf: hirudin-like proteinmaker-scaffold14_size734282-snap-gene-3.20gene
tpa: prion protein 2a 2amaker-scaffold3758_size7581-snap-gene-0.1gene
tppp family proteinmaker-scaffold1322_size48131-snap-gene-0.14gene
tpr repeat-containing protein ydr161wmaker-scaffold18_size714446-snap-gene-6.37gene
tpr repeat nuclearmaker-scaffold592_size129239-snap-gene-0.23gene
tpr repeat proteinmaker-scaffold634_size121673-snap-gene-0.20gene
traf and tnf receptor-associated proteinmaker-scaffold1523_size37540-snap-gene-0.14gene
trafficking protein particle complex subunit 10maker-scaffold80_size398941-snap-gene-1.11gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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