Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
trafficking protein particle complex subunit 10-likemaker-scaffold80_size398941-snap-gene-1.10gene
trafficking protein particle complex subunit 10- partialmaker-scaffold80_size398941-snap-gene-1.12gene
trafficking protein particle complex subunit 8maker-scaffold422_size175911-snap-gene-0.34gene
trafficking protein particle complex subunit 9 isoform x2maker-scaffold1072_size64607-snap-gene-0.12gene
traf-interacting proteinmaker-scaffold559_size137194-snap-gene-0.23gene
transaldolasesnap_masked-scaffold174_size287829-processed-gene-1.11gene
transaldolasesnap_masked-scaffold1965_size23766-processed-gene-0.5gene
Transaldolasemaker-scaffold370_size193435-snap-gene-0.33gene
transaldolase proteinmaker-scaffold11500_size2009-snap-gene-0.2gene
transcriptional activator protein pur-betamaker-scaffold1455_size40601-snap-gene-0.14gene
transcriptional adapter 2b isoform x2snap_masked-scaffold487_size158652-processed-gene-0.33gene
transcriptional adaptor 2amaker-scaffold1615_size33485-snap-gene-0.11gene
transcriptional partialsnap_masked-scaffold2112_size20555-processed-gene-0.4gene
transcriptional regulatorsnap_masked-scaffold450_size166944-processed-gene-0.3gene
transcriptional regulatormaker-scaffold1149_size94623-snap-gene-0.18gene
transcriptional regulatormaker-scaffold36_size508890-snap-gene-3.2gene
transcriptional regulatormaker-scaffold747_size103044-snap-gene-0.18gene
transcriptional regulatormaker-scaffold243_size241480-snap-gene-1.19gene
transcriptional regulatorsnap_masked-scaffold12_size759060-processed-gene-3.3gene
transcriptional regulatorsnap_masked-scaffold166_size294552-processed-gene-1.5gene
transcriptional regulator -like 6maker-scaffold87_size395581-snap-gene-1.11gene
transcriptional repressor ctcfsnap_masked-scaffold22_size673200-processed-gene-5.2gene
transcriptional repressor ctcf-like isoform x2maker-scaffold40_size501252-snap-gene-0.14gene
transcriptional repressor scratchmaker-scaffold1268_size51707-snap-gene-0.17gene
transcription antitermination proteinsnap_masked-scaffold358_size197577-processed-gene-0.8gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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