Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
tyrosine decarboxylase 2maker-scaffold1003_size71949-snap-gene-0.9gene
tyrosine kinase orphanmaker-scaffold10_size831480-snap-gene-5.11gene
tyrosine partialmaker-scaffold188_size271682-snap-gene-1.34gene
tyrosine-protein kinase ablmaker-scaffold184_size276635-snap-gene-0.15gene
tyrosine-protein kinase csk isoform x5maker-scaffold506_size152672-snap-gene-0.27gene
tyrosine-protein kinase hopscotchsnap_masked-scaffold40_size501252-processed-gene-0.1gene
tyrosine-protein kinase lynmaker-scaffold578_size132436-snap-gene-0.29gene
tyrosine-protein kinase rykmaker-scaffold2235_size18398-snap-gene-0.3gene
tyrosine-protein kinase sharkmaker-scaffold628_size122696-snap-gene-0.27gene
tyrosine-protein kinase transmembrane receptor rormaker-scaffold590_size129399-snap-gene-0.33gene
tyrosine-protein kinase transmembrane receptor ror2maker-scaffold1160_size58366-snap-gene-0.10gene
tyrosine-protein kinase wsckmaker-scaffold104_size368486-snap-gene-2.40gene
tyrosine-protein phosphatasemaker-scaffold18_size714446-snap-gene-6.34gene
tyrosine-protein phosphatase 10d-likemaker-scaffold477_size161254-snap-gene-0.22gene
tyrosine-protein phosphatase 99amaker-scaffold388_size188554-snap-gene-0.17gene
tyrosine-protein phosphatase 99amaker-scaffold162_size295716-snap-gene-0.10gene
tyrosine-protein phosphatase non-receptor type 1maker-scaffold1404_size42976-snap-gene-0.9gene
tyrosine-protein phosphatase partialmaker-scaffold605_size125465-snap-gene-0.30gene
tyrosine-protein phosphatase partialmaker-scaffold151_size306168-snap-gene-1.7gene
tyrosine recombinasemaker-scaffold184_size276635-snap-gene-1.33gene
tyrosine--trna cytoplasmicsnap_masked-scaffold836_size90567-processed-gene-0.8gene
tyrosyl-dna phosphodiesterasemaker-scaffold1541_size36691-snap-gene-0.12gene
tyrosyl-trna synthetasemaker-scaffold2519_size14888-snap-gene-0.0gene
tyw4_yarli ame: fullmaker-scaffold108_size357748-snap-gene-2.16gene
u2 small nuclear ribonucleoprotein amaker-scaffold981_size73921-snap-gene-0.18gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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