Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
ubiquitin carboxyl-terminal hydrolase 24 isoform x8maker-scaffold355_size198070-snap-gene-0.39gene
ubiquitin carboxyl-terminal hydrolase 24 isoform x8maker-scaffold865_size87005-snap-gene-0.19gene
ubiquitin carboxyl-terminal hydrolase 28 isoform x3maker-scaffold1779_size28306-snap-gene-0.6gene
ubiquitin carboxyl-terminal hydrolase 3maker-scaffold609_size125094-snap-gene-0.20gene
ubiquitin carboxyl-terminal hydrolase 30-likemaker-scaffold6759_size3621-snap-gene-0.1gene
ubiquitin carboxyl-terminal hydrolase 31-likesnap_masked-scaffold989_size72935-processed-gene-0.7gene
ubiquitin carboxyl-terminal hydrolase 32snap_masked-scaffold190_size271632-processed-gene-1.19gene
ubiquitin carboxyl-terminal hydrolase 38-likemaker-scaffold187_size272365-snap-gene-1.28gene
ubiquitin carboxyl-terminal hydrolase 4maker-scaffold540_size141973-snap-gene-0.18gene
ubiquitin carboxyl-terminal hydrolase 7maker-scaffold853_size88743-snap-gene-0.13gene
ubiquitin carboxyl-terminal hydrolase cyld-like isoform x4maker-scaffold753_size102382-snap-gene-0.34gene
ubiquitin carboxyl-terminal hydrolase isozyme l3maker-scaffold456_size166325-snap-gene-0.24gene
ubiquitin-conjugating enzymemaker-scaffold1280_size50848-snap-gene-0.10gene
ubiquitin-conjugating enzyme e2-maker-scaffold703_size109190-snap-gene-0.18gene
ubiquitin-conjugating enzyme e2-17 kdamaker-scaffold617_size123379-snap-gene-0.19gene
ubiquitin-conjugating enzyme e2- 22kda-like proteinsnap_masked-scaffold372_size192401-processed-gene-0.26gene
ubiquitin-conjugating enzyme e2-32 kdamaker-scaffold658_size117954-snap-gene-0.30gene
ubiquitin-conjugating enzyme e2-32 kdamaker-scaffold1057_size73593-snap-gene-0.30gene
ubiquitin-conjugating enzyme e2 amaker-scaffold865_size87005-snap-gene-0.24gene
ubiquitin-conjugating enzyme e2 g1maker-scaffold888_size84757-snap-gene-0.21gene
ubiquitin-conjugating enzyme e2 g2maker-scaffold624_size122968-snap-gene-0.23gene
ubiquitin-conjugating enzyme e2 j2snap_masked-scaffold277_size226016-processed-gene-1.0gene
ubiquitin-conjugating enzyme e2 l3maker-scaffold1282_size50771-snap-gene-0.19gene
ubiquitin-conjugating enzyme e2msnap_masked-scaffold628_size122696-processed-gene-0.19gene
ubiquitin-conjugating enzyme e2 q2maker-scaffold3014_size10665-snap-gene-0.2gene

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Cross References
External references for this organism
DatabaseAccession
PMID28369352
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