Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
ubiquitin conjugation factor e4 a-likemaker-scaffold186_size273091-snap-gene-0.14gene
ubiquitin conjugation factor e4 bmaker-scaffold387_size188669-snap-gene-0.16gene
ubiquitin c-terminal hydrolase x4maker-scaffold1013_size70870-snap-gene-0.19gene
ubiquitin domain-containing protein 2-likesnap_masked-scaffold619_size123246-processed-gene-0.4gene
ubiquitin domain-containing protein ubfd1snap_masked-scaffold1635_size32709-processed-gene-0.4gene
ubiquitin fusion degradation protein 1 homologmaker-scaffold15_size728074-snap-gene-5.20gene
ubiquitin-like modifier activating enzyme 1 isoform x1maker-scaffold168_size293125-snap-gene-0.16gene
ubiquitin-like modifier-activating enzyme 5snap_masked-scaffold276_size226481-processed-gene-0.11gene
ubiquitin-like modifier-activating enzyme 6-likemaker-scaffold339_size202159-snap-gene-1.22gene
ubiquitin-like protein 5-likesnap_masked-scaffold56_size446035-processed-gene-3.18gene
ubiquitin-like protein 7maker-scaffold8426_size2735-snap-gene-0.2gene
ubiquitin-like protein atg12-likemaker-scaffold895_size84271-snap-gene-0.30gene
ubiquitin-like protein atg12-likemaker-scaffold1064_size65302-snap-gene-0.23gene
ubiquitin proteinmaker-scaffold1207_size55689-snap-gene-0.14gene
ubiquitin-protein e3snap_masked-scaffold347_size200506-processed-gene-1.2gene
ubiquitin-protein ligase bre1maker-scaffold263_size232787-snap-gene-1.20gene
ubiquitin-protein ligase e3b isoform x1snap_masked-scaffold347_size200506-processed-gene-0.2gene
ubiquitin-protein ligase e3cmaker-scaffold363_size195477-snap-gene-0.52gene
ubiquitin-protein ligase e3 component n-recognin-maker-scaffold15_size728074-snap-gene-2.18gene
ubiquitin thioesterase otu1snap_masked-scaffold895_size84271-processed-gene-0.10gene
ubiquitin thioesterase otu1snap_masked-scaffold1064_size65302-processed-gene-0.14gene
ubiquitin thioesterase otubain-likesnap_masked-scaffold628_size122696-processed-gene-0.8gene
ubiquitin thioesterase trabidmaker-scaffold297_size217559-snap-gene-0.31gene
ubx domain-containing protein 1-bsnap_masked-scaffold169_size292178-processed-gene-1.21gene
ubx domain-containing protein 4-likemaker-scaffold452_size166894-snap-gene-0.36gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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