Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
ubx domain-containing protein 6-likemaker-scaffold122_size333723-snap-gene-0.19gene
udp- c:betagal beta- -n-acetylglucosaminyltransferase 5maker-scaffold528_size145933-snap-gene-0.24gene
udp- c:betagal beta- -n-acetylglucosaminyltransferase 5amaker-scaffold2020_size22516-snap-gene-0.6gene
udp- c:betagal beta- -n-acetylglucosaminyltransferase 5-likemaker-scaffold458_size165745-snap-gene-0.17gene
UDP-galactose-4-epimerasesnap_masked-scaffold3502_size8402-processed-gene-0.2gene
UDP-galactose-4-epimerasemaker-scaffold2766_size12503-snap-gene-0.0gene
udp-galactose translocatormaker-scaffold2770_size12482-snap-gene-0.5gene
udp-glucose 4-epimerasemaker-scaffold264_size232020-snap-gene-1.14gene
udp-glucose 4-epimerasemaker-scaffold106_size358372-snap-gene-0.16gene
udp-glucose 4-epimerasesnap_masked-scaffold3624_size8019-processed-gene-0.0gene
udp-glucose 6-dehydrogenasesnap_masked-scaffold35_size523699-processed-gene-4.1gene
udp-glucose 6-dehydrogenasemaker-scaffold1525_size37465-snap-gene-0.0gene
udp-glucose 6-dehydrogenasemaker-scaffold66_size431359-snap-gene-1.0gene
udp-glucuronic acid decarboxylase 1snap_masked-scaffold84_size396325-processed-gene-1.2gene
udp-glucuronic acid decarboxylase 1-likesnap_masked-scaffold84_size396325-processed-gene-1.4gene
udp-glucuronosyltransferase 2b13maker-scaffold205_size259573-snap-gene-0.18gene
udp-glucuronosyltransferase 2b16snap_masked-scaffold101_size371023-processed-gene-0.12gene
udp-glucuronosyltransferase 2b30-likesnap_masked-scaffold1486_size38793-processed-gene-0.2gene
udp-glucuronosyltransferase 2b31-like isoform 1maker-scaffold144_size312663-snap-gene-2.33gene
udp-glucuronosyltransferase 2c1maker-scaffold582_size130280-snap-gene-0.21gene
udp-glucuronosyltransferase 2c1maker-scaffold28_size608977-snap-gene-1.14gene
udp-glucuronosyltransferase 2c1maker-scaffold21_size687808-snap-gene-0.10gene
udp-glucuronosyltransferase 2c1-likesnap_masked-scaffold1486_size38793-processed-gene-0.3gene
udp-n-acetylglucosamine 1-carboxyvinyltransferasemaker-scaffold7447_size3181-snap-gene-0.0gene
udp-n-acetylglucosamine 1-carboxyvinyltransferasesnap_masked-scaffold2845_size11892-processed-gene-0.4gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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