Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
armadillo repeat-containing protein 5maker-scaffold163_size295297-snap-gene-1.21gene
armet-like protein precursormaker-scaffold838_size90379-snap-gene-0.12gene
aromatic-l-amino-acid decarboxylasesnap_masked-scaffold1137_size60140-processed-gene-0.11gene
arp2 3 complex 21 kdsnap_masked-scaffold260_size234135-processed-gene-0.2gene
arrestin1 precursormaker-scaffold22_size673200-snap-gene-2.19gene
arrestin domain-containing protein 3maker-scaffold277_size226016-snap-gene-0.23gene
arrestin domain-containing protein 3-likemaker-scaffold124_size330879-snap-gene-1.35gene
arrestin domain-containing protein 3-likemaker-scaffold237_size242172-snap-gene-0.19gene
arrestin domain-containing protein 3-likemaker-scaffold474_size162001-snap-gene-0.27gene
arsenical pump-driving atpasesnap_masked-scaffold67_size430214-processed-gene-0.2gene
arylalkylamine n-acetyltransferase 3maker-scaffold591_size129331-snap-gene-0.16gene
arylalkylamine n-acetyltransferase 3maker-scaffold687_size111633-snap-gene-0.29gene
aryl hydrocarbon receptorsnap_masked-scaffold798_size95657-processed-gene-0.11gene
aryl hydrocarbon receptor nuclear translocator homolog isoform x11snap_masked-scaffold250_size238258-processed-gene-1.7gene
arylsulfatasemaker-scaffold16_size723419-snap-gene-2.0gene
arylsulfatasemaker-scaffold613_size124221-snap-gene-0.26gene
arylsulfatasemaker-scaffold860_size87501-snap-gene-0.2gene
arylsulfatasesnap_masked-scaffold2_size2283618-processed-gene-17.32gene
arylsulfatase a-likesnap_masked-scaffold1177_size57108-processed-gene-0.3gene
arylsulfatase b-like isoform x1maker-scaffold49_size462716-snap-gene-1.19gene
arylsulfatase h precursormaker-scaffold323_size206388-snap-gene-1.13gene
aryl-sulphate sulphohydrolasesnap_masked-scaffold3337_size9153-processed-gene-0.4gene
ascorbate peroxidase-likemaker-scaffold390_size186308-snap-gene-0.33gene
asparagine-linked glycosylation protein 11-like proteinmaker-scaffold335_size202896-snap-gene-1.29gene
asparagine-linked glycosylation protein 11-like proteinmaker-scaffold555_size137745-snap-gene-0.20gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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