Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
asparagine synthasemaker-scaffold911_size81771-snap-gene-0.19gene
asparaginyl-trna synthetasesnap_masked-scaffold2679_size13327-processed-gene-0.8gene
aspartate aminotransferasemaker-scaffold8074_size2875-snap-gene-0.2gene
aspartate aminotransferasesnap_masked-scaffold1006_size71794-processed-gene-0.16gene
aspartate aminotransferasesnap_masked-scaffold6420_size3884-processed-gene-0.0gene
aspartate aminotransferase bsnap_masked-scaffold1_size3401120-processed-gene-18.2gene
aspartate ammonia-lyasemaker-scaffold1681_size31243-snap-gene-0.4gene
aspartate cytoplasmicsnap_masked-scaffold349_size200065-processed-gene-1.12gene
aspartate kinasesnap_masked-scaffold1006_size71794-processed-gene-0.22gene
aspartyl asparaginyl beta-hydroxylasemaker-scaffold195_size270011-snap-gene-1.15gene
aspartyl asparaginyl beta-hydroxylasemaker-scaffold726_size105808-snap-gene-0.23gene
aspartyl asparaginyl beta-hydroxylase-likemaker-scaffold195_size270011-snap-gene-1.14gene
aspartyl-trna amidotransferase subunit b amidotransferase subunit bsnap_masked-scaffold7872_size2971-processed-gene-0.1gene
aspartyl-trna synthetasesnap_masked-scaffold4375_size6076-processed-gene-0.0gene
aspartyl-trna synthetasesnap_masked-scaffold6514_size3807-processed-gene-0.1gene
AT15141pmaker-scaffold1746_size29152-snap-gene-0.4gene
AT19278pmaker-scaffold492_size156171-snap-gene-0.17gene
At1g14870maker-scaffold828_size91184-snap-gene-0.16gene
AT27402pmaker-scaffold348_size200312-snap-gene-1.16gene
ataxin-3 isoform x2maker-scaffold379_size191255-snap-gene-0.25gene
ataxin-7-like protein 3-like isoform x4snap_masked-scaffold424_size175595-processed-gene-0.21gene
Atlastinsnap_masked-scaffold619_size123246-processed-gene-0.24gene
ATPasemaker-scaffold288_size220435-snap-gene-1.20gene
ATPasemaker-scaffold584_size130229-snap-gene-0.0gene
ATPasesnap_masked-scaffold1_size3401120-processed-gene-6.0gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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