Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
atp-dependent dna helicasemaker-scaffold805_size94795-snap-gene-0.10gene
atp-dependent dna helicasesnap_masked-scaffold1_size3401120-processed-gene-21.35gene
atp-dependent dna helicasesnap_masked-scaffold2097_size20978-processed-gene-0.3gene
atp-dependent dna helicasesnap_masked-scaffold3139_size10036-processed-gene-0.0gene
atp-dependent dna helicasesnap_masked-scaffold5063_size5057-processed-gene-0.0gene
atp-dependent dna helicasesnap_masked-scaffold7132_size3367-processed-gene-0.1gene
atp-dependent dna helicasesnap_masked-scaffold729_size105432-processed-gene-0.11gene
atp-dependent dna helicasesnap_masked-scaffold9686_size2354-processed-gene-0.0gene
atp-dependent metalloproteasemaker-scaffold1327_size47512-snap-gene-0.6gene
atp-dependent metalloproteasemaker-scaffold10994_size2091-snap-gene-0.0gene
atp-dependent metalloproteasesnap_masked-scaffold2_size2283618-processed-gene-14.3gene
atp-dependent -nad h-hydrate dehydratasemaker-scaffold263_size232787-snap-gene-1.28gene
atp-dependent -nad h-hydrate dehydratase isoform x1maker-scaffold299_size217019-snap-gene-1.33gene
atp-dependent partialmaker-scaffold426_size175065-snap-gene-0.48gene
atp-dependent partialmaker-scaffold5219_size4877-snap-gene-0.0gene
atp-dependent proteasemaker-scaffold6387_size3907-snap-gene-0.4gene
atp-dependent proteasemaker-scaffold762_size101363-snap-gene-0.2gene
atp-dependent proteasesnap_masked-scaffold113_size352875-processed-gene-0.1gene
atp-dependent proteasesnap_masked-scaffold2149_size19838-processed-gene-0.3gene
atp-dependent proteasesnap_masked-scaffold2_size2283618-processed-gene-12.15gene
atp-dependent rna helicasemaker-scaffold14_size734282-snap-gene-2.22gene
atp-dependent rna helicasemaker-scaffold6905_size3519-snap-gene-0.1gene
atp-dependent rna helicasesnap_masked-scaffold1_size3401120-processed-gene-10.1gene
atp-dependent rna helicase abstrakt-likesnap_masked-scaffold14_size734282-processed-gene-6.7gene
atp-dependent rna helicase ddx1maker-scaffold716_size107355-snap-gene-0.27gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
Downloads