Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
bicaudal d-related protein homologmaker-scaffold794_size96255-snap-gene-0.19gene
bifunctional arginine demethylase and lysyl-hydroxylase jmjd6-likemaker-scaffold585_size130225-snap-gene-0.20gene
bifunctional arginine demethylase and lysyl-hydroxylase psr isoform x2maker-scaffold1057_size73593-snap-gene-0.32gene
bifunctional arginine demethylase and lysyl-hydroxylase psr isoform x2maker-scaffold417_size177606-snap-gene-0.44gene
bifunctional argininosuccinate lyase n-acetylglutamate synthasemaker-scaffold166_size294552-snap-gene-1.49gene
bifunctional coenzyme a synthasemaker-scaffold67_size430214-snap-gene-1.19gene
bifunctional enzyme : ppgpp synthetase ii and guanosine-3 -bisdiphosphate 3 -pyrophosphohydrolase proteinmaker-scaffold147_size311475-snap-gene-2.18gene
bifunctional isocitrate dehydrogenase kinase phosphatasesnap_masked-scaffold502_size153915-processed-gene-0.11gene
bifunctional polynucleotide phosphatase kinasemaker-scaffold726_size105808-snap-gene-0.22gene
bifunctional polynucleotide phosphatase kinasemaker-scaffold726_size105808-snap-gene-0.27gene
bifunctional ppgpp synthetase ii guanosine-3 -bis pyrophosphate 3 -pyrophosphohydrolasesnap_masked-scaffold166_size294552-processed-gene-1.2gene
bifunctional protein foldsnap_masked-scaffold9748_size2340-processed-gene-0.1gene
bifunctional protein ncoatsnap_masked-scaffold334_size202906-processed-gene-1.10gene
bifunctional protein ncoat-like isoform x2maker-scaffold449_size167299-snap-gene-0.12gene
bile acid receptor-like isoform x8snap_masked-scaffold5_size1054832-processed-gene-4.3gene
biopolymer transportermaker-scaffold587_size153100-snap-gene-0.24gene
biotin-(acetyl- -carboxylase) ligasemaker-scaffold875_size86197-snap-gene-0.17gene
biotin carboxylasemaker-scaffold27_size627376-snap-gene-3.0gene
biotin--protein ligasesnap_masked-scaffold180_size281610-processed-gene-1.22gene
bipolar kinesin krp-130-likemaker-scaffold252_size238019-snap-gene-1.39gene
bmp-binding endothelial regulator proteinmaker-scaffold257_size234952-snap-gene-1.18gene
bola-like protein ddb_g0274169maker-scaffold18_size714446-snap-gene-5.21gene
bone morphogenetic proteinmaker-scaffold47_size466558-snap-gene-3.37gene
bone morphogenetic protein receptor type-1amaker-scaffold138_size318692-snap-gene-1.18gene
bone morphogenic protein typemaker-scaffold175_size286436-snap-gene-0.8gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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