Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
bromodomain-containing protein 7 isoform x3snap_masked-scaffold116_size340332-processed-gene-2.16gene
bromodomain-containing protein 8-like isoform x1maker-scaffold184_size276635-snap-gene-0.16gene
bromodomain testis-specific proteinmaker-scaffold447_size167621-snap-gene-0.50gene
bromodomain testis-specific proteinsnap_masked-scaffold96_size378025-processed-gene-2.27gene
btb poz domain containing 6maker-scaffold116_size340332-snap-gene-2.23gene
btb poz domain-containing proteinmaker-scaffold15_size728074-snap-gene-2.20gene
btb poz domain-containing proteinmaker-scaffold300_size216557-snap-gene-1.30gene
btb poz domain-containing protein 2maker-scaffold1056_size66302-snap-gene-0.16gene
btb poz domain-containing protein 2maker-scaffold99_size374999-snap-gene-0.17gene
btb poz domain-containing protein 2snap_masked-scaffold699_size109694-processed-gene-0.7gene
btb poz domain-containing protein 2-likemaker-scaffold5_size1054832-snap-gene-0.11gene
btb poz domain-containing protein 6-amaker-scaffold186_size273091-snap-gene-0.16gene
btb poz domain-containing protein 9maker-scaffold149_size310270-snap-gene-2.23gene
btb poz domain-containing protein kctd10maker-scaffold249_size238305-snap-gene-0.13gene
btb poz domain-containing protein kctd3snap_masked-scaffold248_size238799-processed-gene-1.13gene
btb poz domain-containing protein kctd9maker-scaffold361_size196684-snap-gene-0.23gene
bud31 homologmaker-scaffold1882_size25737-snap-gene-0.10gene
bumetanide-sensitive sodium- -chloride cotransportermaker-scaffold34_size539781-snap-gene-4.18gene
bursicon alphamaker-scaffold5_size1054832-snap-gene-5.11gene
bursicon-betamaker-scaffold5_size1054832-snap-gene-5.10gene
bzip transcription factorsnap_masked-scaffold552_size138156-processed-gene-0.0gene
c11orf46 homologmaker-scaffold1615_size33485-snap-gene-0.14gene
c12orf31 homologmaker-scaffold906_size82779-snap-gene-0.10gene
c14orf130 homologmaker-scaffold160_size295910-snap-gene-1.36gene
c1galt1-specific chaperone 1maker-scaffold245_size240363-snap-gene-0.9gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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