Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
carboxylase:pyruvate acetyl-coa propionyl-maker-scaffold442_size170051-snap-gene-0.27gene
carboxylate--amine ligasemaker-scaffold871_size86487-snap-gene-0.26gene
carboxylesterasemaker-scaffold132_size323655-snap-gene-2.24gene
carboxylesterasesnap_masked-scaffold1280_size50848-processed-gene-0.5gene
carboxylesterase partialmaker-scaffold349_size200065-snap-gene-1.34gene
carboxypeptidase a2 precursormaker-scaffold42_size484952-snap-gene-0.10gene
carboxypeptidase bmaker-scaffold1125_size61249-snap-gene-0.11gene
carboxypeptidase bmaker-scaffold239_size242058-snap-gene-1.25gene
carboxypeptidase bmaker-scaffold313_size211302-snap-gene-1.26gene
carboxypeptidase bmaker-scaffold695_size110128-snap-gene-0.17gene
carboxypeptidase bsnap_masked-scaffold1197_size55989-processed-gene-0.8gene
carboxypeptidase bsnap_masked-scaffold954_size76946-processed-gene-0.4gene
carboxypeptidase b-likemaker-scaffold998_size72096-snap-gene-0.11gene
carboxypeptidase dmaker-scaffold2006_size22768-snap-gene-0.7gene
carboxypeptidase dsnap_masked-scaffold205_size259573-processed-gene-1.6gene
carboxypeptidase d-likesnap_masked-scaffold228_size248166-processed-gene-0.6gene
carboxypeptidase e-likemaker-scaffold22_size673200-snap-gene-4.20gene
carboxypeptidase mmaker-scaffold1122_size61463-snap-gene-0.15gene
carboxypeptidase n catalytic chain isoform x2maker-scaffold2006_size22768-snap-gene-0.8gene
carboxypeptidase pm20d1snap_masked-scaffold589_size129586-processed-gene-0.12gene
carboxy-terminal kinesin 2-like isoform x2maker-scaffold1274_size51331-snap-gene-0.10gene
carcinoembryonic antigen-related cell adhesion molecule 8-like isoform x1maker-scaffold706_size108852-snap-gene-0.20gene
cardioacceleratory peptide 2b splicing variant bsnap_masked-scaffold124_size330879-processed-gene-2.6gene
cardioacceleratory peptide receptor 2 isoform x1snap_masked-scaffold271_size230452-processed-gene-1.3gene
carnitine dehydratasesnap_masked-scaffold1_size3401120-processed-gene-1.35gene

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Cross References
External references for this organism
DatabaseAccession
PMID28369352
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