BLAST of nuclear receptor vs. L. salmonis genes
Match: EMLSAG00000008261 (supercontig:LSalAtl2s:LSalAtl2s49:858199:860758:1 gene:EMLSAG00000008261 transcript:EMLSAT00000008261 description:"maker-LSalAtl2s49-augustus-gene-8.3")

HSP 1 Score: 87.4261 bits (215), Expect = 2.705e-19
Identity = 51/218 (23.39%), Postives = 109/218 (50.00%), Query Frame = 0

Query:   92 IAIKAYIHSAYSQTPLDFTAICWAYTKSIRKLTRFAQNVEDFNALEVHDRKLLLLENLDPMFNIRVGHFFNCDATNLLDQLECLAVFDVSNLKSYIGGWIPEVGPLHWNQFFVTPWANSEQHERKFEGLMSEIKDLGLDKSTATILTVVSLFCPEGTNTFKHPDVVAKMQQKYIGLLFRYLCHTRGRSEAELKFSSFLSMMGNLKEMSDIMKNKTIKW 309
            + +K+++  +    P+ F      Y   ++++T F   +  F AL   D+K LLL N+D + NI+   + + +  N+ +Q E   +   +N +            +++ + F  PW +S + + +++ LM  I DL +D+ T  +L  +++F         + +++ + Q  +  LL++YLC T G S   L F  +++++  L+EM+  + NK + +
Sbjct:  262 VNMKSFMEYSQLNEPIPFEISLSGYNTCVQRITMFMTKINFFAALSPEDQKKLLLNNVDMVVNIKTARYLHPN-NNITEQFE--IINGKNNSEKSCTTSPATSNNVYYQEIFKNPWCSSFEDKTQYKALMKAIFDLEMDEITIILLIGLTIFSTTNCVDLDNINLIMRFQDVFSHLLYKYLCSTIGNSSTFLLFPKYINILAQLEEMAKTILNKRLPF 476          

BLAST of nuclear receptor vs. L. salmonis genes
Match: EMLSAG00000012965 (supercontig:LSalAtl2s:LSalAtl2s98:1224628:1226761:1 gene:EMLSAG00000012965 transcript:EMLSAT00000012965 description:"snap_masked-LSalAtl2s98-processed-gene-12.8")

HSP 1 Score: 82.4185 bits (202), Expect = 1.342e-17
Identity = 58/211 (27.49%), Postives = 104/211 (49.29%), Query Frame = 0

Query:   98 IHSAYSQTPLDFTAICWAYTKSIRKLTRFAQNVEDFNALEVHDRKLLLLENLDPMFNIRVGHFFNCDATNLLDQLECLAVFDVSNLKSYIGGWIPEVGPLHWNQFFVTPWANSEQHERKFEGLMSEIKDLGLDKSTATILTVVSLFCPEGTNTFKHPDVVA-KMQQKYIGLLFRYLCHTRGRSEAELKFSSFLSMMGNLKEMSDIMKNKTI 307
            I+ +YS            Y   +R++ + +  ++ F    + D+K LLL N D + NIR   FF     +         +F V+N         P+ G +   Q F +PWA S++ E+K+  LM +I DL LD+ +  +++++SLF    TN   H ++ A K Q+ +  L+ +Y+ H  G+  A      ++ M+ +L+EM+ +M  K +
Sbjct:  422 INCSYSNKTFPQDVCLEGYLVCMRRIIQLSSMLDFFTCFSMEDQKALLLTNTDMIVNIRTARFFQ-HGVHFKKH-----IFFVNNTDD-----DPKYGRMDTFQIFQSPWACSDEDEKKYNDLMKKIFDLQLDEISTVLISMMSLF--SSTNAKIHDELRANKTQEFFTNLMKKYIIHHVGKDAACQLLPKYIFMIAHLEEMAQVMVXKRL 619          

BLAST of nuclear receptor vs. L. salmonis genes
Match: EMLSAG00000012651 (supercontig:LSalAtl2s:LSalAtl2s959:3535:5114:-1 gene:EMLSAG00000012651 transcript:EMLSAT00000012651 description:"maker-LSalAtl2s959-snap-gene-0.24")

HSP 1 Score: 67.0106 bits (162), Expect = 1.549e-12
Identity = 56/192 (29.17%), Postives = 94/192 (48.96%), Query Frame = 0

Query:  122 KLTRFAQNVEDFNALEVHDRKLLLLENLDPMFNIRVGHFFNCDAT-NLLDQLECLAVFDVSNLKSYIGGWIPEVGPLHWN--QFFVTPWANSEQHERKFEGLMSEIKDLGLDKSTATILTVVSLFCPEGTNTFKHPDVVAKMQQKYIGLLFRYLCHTRGRSEAELKFSS-----FLSMMGNLKEMSDIMKNK 305
            ++ +FA  ++ F  L   D+KLLL +N+D M  +R    FN D T NL  QL+        N  S I G    VGP + +  + F  PWA SE+H   F+    +I  LGL +  A +L +V+LF        +  + + + Q++   L +RYL         ++KFSS        ++  L+ +S+++ ++
Sbjct:  303 RVAKFATYIDHFEELTSDDKKLLLSKNMDSMAILRTVVCFNKDGTGNLTSQLK--------NTGSPIYG---NVGPYYISVERVFRHPWAKSEEHRHLFKETFRKIASLGLGEKAAMLLQLVTLFSVLDL-PVQERNKIEQFQEQMALLCYRYL------KSQKIKFSSNDMIKVFVLLSELRYLSNLLTDQ 476          

BLAST of nuclear receptor vs. L. salmonis genes
Match: EMLSAG00000004174 (supercontig:LSalAtl2s:LSalAtl2s220:369739:371271:-1 gene:EMLSAG00000004174 transcript:EMLSAT00000004174 description:"augustus_masked-LSalAtl2s220-processed-gene-3.5")

HSP 1 Score: 54.6842 bits (130), Expect = 1.412e-8
Identity = 39/175 (22.29%), Postives = 84/175 (48.00%), Query Frame = 0

Query:  146 LENLDPMFNIRVGHFFNCDATNLLDQLECLAVFDVSNLKSYIGGWIP-----EVGPLHWNQFFVTPWAN---SEQHERKFEGLMSEIKDLGLDKSTATILTVVSLFCPEGTNTFKHPDVVAKMQQKYIGLLFRYLCHTRGRSEAELKFSSFLSMMGNLKEMSDIMKNKTIKWSLS 312
            + N DP+  + V   F+     L +QL      +    K YI    P     +   L   Q F  PW +   S     KF+ ++ +++ L LD+    +L+V+  F   GT+     ++++K+Q++   +LF+++  + G  + +  FS  +S++ +L+E+  + + K + + ++
Sbjct:  339 IPNTDPVLRVNVSSVFSA-RVGLKEQL-----LETIGSKDYIVQKTPYPNMAQDTILSMKQVFTNPWGDGGLSRDCVNKFDNILEKMEKLNLDRKIECLLSVIPFFA--GTDNPYETELLSKVQEEINMVLFQHVYESAGPRDGKTLFSKIMSIIVDLQEIVTLCRKKALDFKIA 505          

BLAST of nuclear receptor vs. nr
Match: gi|1325312032|ref|XP_023337648.1| (nuclear receptor ROR-gamma-like isoform X1 [Eurytemora affinis])

HSP 1 Score: 160.999 bits (406), Expect = 3.033e-41
Identity = 77/253 (30.43%), Postives = 147/253 (58.10%), Query Frame = 0

Query:   56 LKTEYTREDEQLLHSLIHLDRDHSFHIGQSLCEASIIAIKAYIHSAYSQTPLDFTAICWAYTKSIRKLTRFAQNVEDFNALEVHDRKLLLLENLDPMFNIRVGHFFNCDATNLLDQLECLAVFDVSNLKSYIGGWIPEVGPLHWNQFFVTPWANSEQHERKFEGLMSEIKDLGLDKSTATILTVVSLFCPEGTNTFKHPDVVAKMQQKYIGLLFRYLCHTRGRSEAELKFSSFLSMMGNLKEMSDIMKNKTIK 308
            ++  +  +D+Q +  L+++D+     I + + +  +  +   + SA     LD+  I W YT +I+K+T FA+++ +F +  + D+K LL +N DP+FNI+   FFN  + +  DQ+    VF+   L       +  + P+ WNQ F +PWA + +HE+K+  L++   +L L   +  ++ V++LF  +G +  ++ + ++++Q+ Y+ LL+RYL H  G   AE   + F+ M+  L+EM+DIMK++T+K
Sbjct:  299 IEARFNSDDQQRIDQLVNIDKSTQLTI-EDIPKEILETLIKLMFSADGGKSLDYAVIIWGYTFAIQKITYFAKSLPEFVSCSIEDQKNLLYQNSDPIFNIKSAMFFNSGSDSFTDQMNKFCVFNFEKLSDKFNTVV--MQPIEWNQLFKSPWATNLEHEQKYVNLLNHAAELNLQHDSGCLMQVIALFAIDGEHYLENQEQISRIQESYVNLLYRYLVHKEGSKRAEELHAKFMQMLHYLREMADIMKHQTLK 548          

BLAST of nuclear receptor vs. nr
Match: gi|1325312035|ref|XP_023337649.1| (nuclear receptor ROR-gamma-like isoform X2 [Eurytemora affinis])

HSP 1 Score: 100.908 bits (250), Expect = 4.899e-20
Identity = 49/170 (28.82%), Postives = 94/170 (55.29%), Query Frame = 0

Query:   56 LKTEYTREDEQLLHSLIHLDRDHSFHIGQSLCEASIIAIKAYIHSAYSQTPLDFTAICWAYTKSIRKLTRFAQNVEDFNALEVHDRKLLLLENLDPMFNIRVGHFFNCDATNLLDQLECLAVFDVSNLKSYIGGWIPEVGPLHWNQFFVTPWANSEQHERKFEGLMSEIK 225
            ++  +  +D+Q +  L+++D+     I + + +  +  +   + SA     LD+  I W YT +I+K+T FA+++ +F +  + D+K LL +N DP+FNI+   FFN  + +  DQ+    VF+   L       +  + P+ WNQ F +PWA + +HE+K+  +++  K
Sbjct:  299 IEARFNSDDQQRIDQLVNIDKSTQLTI-EDIPKEILETLIKLMFSADGGKSLDYAVIIWGYTFAIQKITYFAKSLPEFVSCSIEDQKNLLYQNSDPIFNIKSAMFFNSGSDSFTDQMNKFCVFNFEKLSDKFNTVV--MQPIEWNQLFKSPWATNLEHEQKYVNILNNTK 465          

BLAST of nuclear receptor vs. nr
Match: gi|1325319431|ref|XP_023341500.1| (uncharacterized protein LOC111711390 [Eurytemora affinis])

HSP 1 Score: 80.8777 bits (198), Expect = 2.455e-14
Identity = 51/180 (28.33%), Postives = 94/180 (52.22%), Query Frame = 0

Query:   95 KAYIHSAYSQTPLDFTAICWAYTKSIRKLTRFAQNVEDFNALEVHDRKLLLLENLDPMFNIRVGHFFNCDATNLLDQLE--CLAV--FDVSNLKSYIGGWIPEVGPLHWNQFFVTPWANSEQHERKFEGLMSEIKDLGLDKSTATILTVVSLFCPEGTNTFKHPDVVAKMQQKYIGLLFR 270
            +A++  A +   +  + I  AY   I+++ RFA +++DF  L   D   LL+ N   M NIR+  +FN   TNL  QL   C  V  +   +++  +     E  P++    FV+PW     +E ++  LM+ I  L +D ++  +L+V++LF  E T   ++ +++   ++K+  LL+R
Sbjct:    7 RAFLECALTGKKISQSTIMHAYQTCIKRIVRFANSLQDFVELPPEDMHKLLVANTVNMINIRIARWFN-PKTNLESQLSLCCTGVDLYKEVSIQHDLDSSFVE-APVNQEDVFVSPWCCDSSYEDRYFALMNSIHALPMDTTSMVLLSVMTLFDSEKTTGLQNFEMILSHEKKFSLLLYR 184          

BLAST of nuclear receptor vs. nr
Match: gi|657600354|gb|AID52838.1| (nuclear receptor [Tigriopus japonicus])

HSP 1 Score: 84.3445 bits (207), Expect = 2.936e-14
Identity = 58/212 (27.36%), Postives = 103/212 (48.58%), Query Frame = 0

Query:   98 IHSAYSQTPLDFTAICWAYTKSIRKLTRFAQNVEDFNALEVHDRKLLLLENLDPMFNIRVGHFFNCDATNLLDQL-ECLAVFDVSNLKSYIGGW-IPEVGPLHWNQFFVTPWANSEQHERKFEGLMSEIKDLGLDKSTATILTVVSLFCPEGTNTFKHPDVVAKMQQKYIGLLFRYLCHTRGRSEAELKFSSFLSMMGNLKEMSDIMKNKTI 307
            I +A + T + ++A+   YT  +R++ +F   ++ F +  + D++ LLL N D + N+R          NL  Q+        + N  + +  +  PE   L + Q F +PWA  E+HE +F  LM  +  L +D++T T++ ++ LF        K      + Q+ +  LL+RYL    GR  A      ++ ++  L+EMS IM  K +
Sbjct:  351 IEAAKNGTVIPYSALVEGYTTCMRRIIQFVSKLDFFQSFVLPDQRDLLLHNTDMIVNLRSARLLR-PGINLQAQINHATGGPSLENTTTSMDLFQCPER--LEYKQIFQSPWACDEKHEAQFASLMENLFHLEMDRTTTTLMAMIVLFSTSYAE-LKDSHRAVQNQEFFTQLLYRYLGSMIGRKNAIKLLPKYMHLISQLEEMSQIMIAKRL 558          

BLAST of nuclear receptor vs. nr
Match: gi|657600364|gb|AID52843.1| (nuclear receptor [Tigriopus japonicus])

HSP 1 Score: 69.3218 bits (168), Expect = 2.432e-9
Identity = 45/211 (21.33%), Postives = 99/211 (46.92%), Query Frame = 0

Query:   97 YIHSAYSQTPLDFTAICWAYTKSIRKLTRFAQNVEDFNALEVHDRKLLLLENLDPMFNIRVGHFFNCDATNLLDQLECLAVFDVSNLKSYIGGWIPEVGPLHWNQFFVTPWANSEQHERKFEGLMSEIKDLGLDKSTATILTVVSLFCPEGTNTFKHPDVVAKMQQKYIGLLFRYLCHTRGRSEAELKFSSFLSMMGNLKEMSDIMKNKTI 307
            ++ SA  +T + + A    ++  ++++++F   ++ F++L   D+++LL  N   + N++         TN L    CL      N              L ++QFF +PW  S   E +++ LM E+ +L +D  T+ ++ ++++  P  T      + V+  +  +  LL+++L   +G     + F      +  L+EM+ I+K + +
Sbjct:  272 FMESAKHETIIPYDACVDGFSTCVQRISKFMSRLDFFSSLMWSDQQILLRCNTHMVVNLKSARMLK--PTNSLQGQLCLTNGTQPN-----QAISASPNRLTYSQFFNSPWCCSADKEEEYKKLMDELFNLDMDDVTSVLMMIMTMLAPP-TEELIQSNQVSSRRSYFSQLLYKHLYSVKGEQLGRVSFQKCTQFLDKLREMAHILKQERL 474          

BLAST of nuclear receptor vs. nr
Match: gi|1325258266|ref|XP_023325470.1| (uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258271|ref|XP_023325479.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258277|ref|XP_023325484.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258282|ref|XP_023325492.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258289|ref|XP_023325500.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258292|ref|XP_023325508.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258296|ref|XP_023325515.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258300|ref|XP_023325523.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258306|ref|XP_023325531.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258311|ref|XP_023325539.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258315|ref|XP_023325547.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258319|ref|XP_023325554.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258329|ref|XP_023325561.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258334|ref|XP_023325570.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258338|ref|XP_023325578.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258342|ref|XP_023325585.1| uncharacterized protein LOC111699122 [Eurytemora affinis])

HSP 1 Score: 67.3958 bits (163), Expect = 1.238e-8
Identity = 55/256 (21.48%), Postives = 114/256 (44.53%), Query Frame = 0

Query:   60 YTREDEQLLHSLI--HLDRDHSFHIGQSLCEASIIAIKAYIHSAYSQTPLDFTAICWAYTKSIRKLTRFAQNVEDFNALEVHDRKLLLLENLDPMFNIRVGHFFNCDATNLLDQLECLAVFDVSNLKSYIGGWIPEVGPLH--WNQFFVTPWANSEQHERKFEGLMSEIKDLGLDKSTATILTVVSLFCPEGTNTFKHPDVVAKMQQKYIGLLFRYLCHTRGRSEAELKFSSFLSMMGNLKEMSDIMKNKTIKWSL 311
            +T ++ ++L +++  H +R  S + G+ L       IK  I  +    P+   A    Y   + ++TR A + E F  L   D+  LL EN + + ++R   FF+         +  +   D+  +++     + E    H  +  F           E ++  L  ++  +  D++ + +LT   LF P+   +  +   V + Q  Y+ +L+RY+     R  A LK ++ L ++  ++EM++I + + I  +L
Sbjct:  432 FTPDEAEILKNVVESHNERYRSVNFGEEL-------IKEMIFCSMFSIPVSTQAAITGYRLIVERITRIANHQEAFKQLSNEDQGALLKENANLLVSLRGAIFFDSQKNGAQQVMLSMGEDDIQTIENMFSKLLREDTMKHIDYKTFNSIQAIGLSPKEDRYNYLQEKVGKVLNDETISILLTYTVLFSPDFC-SLTNSREVYRTQSMYLKMLYRYIYSKHPRHAARLKLANVLDVITCIREMAEIKELRAINQNL 679