pdz and lim domain protein 3, maker-scaffold261_size233860-snap-gene-1.24 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of pdz and lim domain protein 3 vs. L. salmonis genes
Match: EMLSAG00000011910 (supercontig:LSalAtl2s:LSalAtl2s83:648777:650831:1 gene:EMLSAG00000011910 transcript:EMLSAT00000011910 description:"maker-LSalAtl2s83-augustus-gene-6.20") HSP 1 Score: 112.464 bits (280), Expect = 4.866e-30 Identity = 73/217 (33.64%), Postives = 116/217 (53.46%), Query Frame = 0 Query: 39 LISCILRKKNLSETWGFRLQGGKDRGIPFQIQKVPINSVAGLGGCRPNDYLVQINGRNVFELTHDEAKNLITNSGESLDLVIERGDNIVPSMGHMFPKAKKDPPAQELPSKPKPYYQRHL---EETGELPGQQNKGFTTVGKPKMTTKQYMSPLEMYGEEALEEILDQGTIFGKEINVLNP-----------------WNMTGKELDLNKSSVLNSI 235 +++ L++ +E WGF + GGKD+ + ++ K+ S A G + DY+ QING+ VFE++H++ I SG SL L ERGD+IVP+ ++P +KK P A+ + YY + +G LP N FTTVGKP++ QY P+++Y E+ LEE+ ++ I ++NP M G++ D KS+ LN+I Sbjct: 5 IVNLALKRSGKNEPWGFVIIGGKDQNLTVKVGKIKPYSPAEEAGLKTMDYVWQINGKEVFEMSHNDCVKEIKESGTSLSLSTERGDHIVPNFEEIWP-SKKGPKAERRKRGLEYYYDAMTNGPQLSGFLPLAPN--FTTVGKPQIYVNQYDCPIQVYSEDTLEEMKEE------RITMMNPDLVDRIQDKVPQSDNPMAIMQGRKFDPTKSNALNAI 212
BLAST of pdz and lim domain protein 3 vs. L. salmonis genes
Match: EMLSAG00000002529 (supercontig:LSalAtl2s:LSalAtl2s14:1093206:1130691:1 gene:EMLSAG00000002529 transcript:EMLSAT00000002529 description:"augustus_masked-LSalAtl2s14-processed-gene-10.1") HSP 1 Score: 85.8853 bits (211), Expect = 1.618e-21 Identity = 42/85 (49.41%), Postives = 57/85 (67.06%), Query Frame = 0 Query: 122 RGDNIVPSMGHMFPKAKKDPPAQELPSKPKPYYQRHLEETGELPGQQNKGFTTVGKPKMTTKQYMSPLEMYGEEALEEILDQGTI 206 RGDNI+P++ FPK K P KP+PY+ R +E + + + GFTTVGKPK++ KQY SP EMY EEAL+EI+ +GT+ Sbjct: 4 RGDNIIPNLELAFPKKKASPENSSESIKPRPYWIRSIESGQGV--RSSSGFTTVGKPKISAKQYNSPFEMYSEEALDEIMKEGTL 86
BLAST of pdz and lim domain protein 3 vs. L. salmonis genes
Match: EMLSAG00000011749 (supercontig:LSalAtl2s:LSalAtl2s817:158330:174675:1 gene:EMLSAG00000011749 transcript:EMLSAT00000011749 description:"maker-LSalAtl2s817-snap-gene-1.11") HSP 1 Score: 56.225 bits (134), Expect = 6.135e-10 Identity = 35/105 (33.33%), Postives = 58/105 (55.24%), Query Frame = 0 Query: 39 LISCILRKKNLSETWGFRLQGGKDRGIPFQIQKVPINSVAGLGGCRPNDYLVQINGRNVFELTHDEAKNLITNSGESLDLVIERGDNIVP--SMGHMFPKAKKDP 141 +I+ +R+ E +GFR+ GGKD +I+KV + S A G + +DYLV + G+ VFEL H++ LI +G+ ++ +R N P H+ P+ + P Sbjct: 4 MITFTIRRSG-REPFGFRIVGGKDAERTCRIEKVTLFSPAHEAGLQTHDYLVTVQGQTVFELNHNQVVGLIQGAGQD-NVSWKRSLNPEPVKKRDHVLPRIQNAP 106
BLAST of pdz and lim domain protein 3 vs. L. salmonis genes
Match: EMLSAG00000009069 (supercontig:LSalAtl2s:LSalAtl2s569:10985:17770:1 gene:EMLSAG00000009069 transcript:EMLSAT00000009069 description:"augustus_masked-LSalAtl2s569-processed-gene-0.0") HSP 1 Score: 51.9878 bits (123), Expect = 1.150e-7 Identity = 33/78 (42.31%), Postives = 46/78 (58.97%), Query Frame = 0 Query: 41 SCILRKKNLSETWGFRLQGGKDRGIPFQIQKVPINSVAGLGGCRPNDYLVQINGRNVFELTHDEAKNLITNSGESLDL 118 S LRKK+ +E +GF ++G P I V INS+A +GG + +DY+V IN ++V HDE LI +SG L L Sbjct: 524 SIKLRKKD-TEGFGFSVKGDS----PVVIAGVDINSLAEMGGMKESDYIVGINDQDVKWAPHDEVVTLIKSSGNVLKL 596
BLAST of pdz and lim domain protein 3 vs. SwissProt
Match: gi|313471772|sp|A1ZA47.2|ZASP_DROME (RecName: Full=PDZ and LIM domain protein Zasp; AltName: Full=Z band alternatively spliced PDZ-motif protein) HSP 1 Score: 79.337 bits (194), Expect = 5.530e-15 Identity = 56/203 (27.59%), Postives = 96/203 (47.29%), Query Frame = 0 Query: 50 SETWGFRLQGGKDRGIPFQIQKVPINSVAGLGGCRPNDYLVQINGRNVFELTHDEAKNLITNSGESLDLVIERGDNIVPSMGHMFPKAKKDPPAQELPSKPKPYYQRHLEETGELPGQQNK-----GFTTVGKP----------KMTTKQYMSPLEMYGEEALEEILD-QGTIFGKEINVLNPWNMTGKELDLNKSSVLNSIR 236 ++ WGFRLQGG D P +QKV S++ G +P D +V+IN +VF L H +A++++ SG + + ++RG + H+ P +P PY Q + +T QQ+ G+ +P + KQY +P+ +Y +E++ E L Q + + +N + KE ++S VL +R Sbjct: 16 AQPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQPGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTW--RPHVTPTGN-------VPQPNSPYLQT-VTKTSLAHKQQDSQHIGCGYNNAARPFSNGGDGGVKSIVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVN-FKKNEKEYQGDRSEVLKFLR 207
BLAST of pdz and lim domain protein 3 vs. SwissProt
Match: gi|83288380|sp|Q3SX40.1|PDLI7_BOVIN (RecName: Full=PDZ and LIM domain protein 7) HSP 1 Score: 63.5438 bits (153), Expect = 4.183e-10 Identity = 47/139 (33.81%), Postives = 68/139 (48.92%), Query Frame = 0 Query: 53 WGFRLQGGKDRGIPFQIQKVPINSVAGLGGCRPNDYLVQINGRNVFELTHDEAKNLITNSGESLDLVIERGDNIVPSMGHMFPKAKKDPPAQEL-PSKPKPYYQRHLEETGEL---PGQ-QNKGFTTVGKPKMTTKQYM 186 WGFRLQGGKD +P I ++ A G D+++ I+G N LTH EA+N I GE L L + R P+ P+ + P Q L P P QR +E+T + PG Q++ F + +T ++M Sbjct: 14 WGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGGLTHIEAQNKIRACGERLSLSLSRAQ---PAQSK--PQKVQTPDKQPLRPLVPDASKQRLMEDTEDWRPRPGTGQSRSFRILA--HLTGTEFM 145
BLAST of pdz and lim domain protein 3 vs. SwissProt
Match: gi|75060928|sp|Q5E9E1.3|PDLI1_BOVIN (RecName: Full=PDZ and LIM domain protein 1; AltName: Full=Elfin) HSP 1 Score: 62.7734 bits (151), Expect = 6.368e-10 Identity = 42/146 (28.77%), Postives = 69/146 (47.26%), Query Frame = 0 Query: 53 WGFRLQGGKDRGIPFQIQKVPINSVAGLGGCRPNDYLVQINGRNVFELTHDEAKNLITNSGESLDLVIERGDNIVPSMGHMFPKAKKDPPAQELPSKPK-PYYQRHLEETGELPGQQNKGFTTVGKPKMTTKQYMSPLEMYGEEAL 197 WGFRL GGKD P I +V S A +G D + I+G N +TH EA+N I +++ L + R + + S + + K+ P L S+P+ + +P + F++ P++ T QY +P +Y E + Sbjct: 14 WGFRLVGGKDFEQPLAISRVTPGSKAAIGNLCVGDVITAIDGENTSNMTHLEAQNKIKGCTDNMTLTVARSEQKIWS-PLVTEEGKRHPYKMNLASEPQEALHIGSAHNRSAVPFTASPAFSSA--PRVITNQYNNPAGLYSSENI 156
BLAST of pdz and lim domain protein 3 vs. SwissProt
Match: gi|74752914|sp|Q9NR12.1|PDLI7_HUMAN (RecName: Full=PDZ and LIM domain protein 7; AltName: Full=LIM mineralization protein; Short=LMP; AltName: Full=Protein enigma) HSP 1 Score: 62.7734 bits (151), Expect = 8.262e-10 Identity = 30/74 (40.54%), Postives = 40/74 (54.05%), Query Frame = 0 Query: 53 WGFRLQGGKDRGIPFQIQKVPINSVAGLGGCRPNDYLVQINGRNVFELTHDEAKNLITNSGESLDLVIERGDNI 126 WGFRLQGGKD +P I ++ A G D+++ I+G N LTH EA+N I GE L L + R + Sbjct: 14 WGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIEAQNKIRACGERLSLGLSRAQPV 87
BLAST of pdz and lim domain protein 3 vs. SwissProt
Match: gi|81907772|sp|Q9Z1Z9.1|PDLI7_RAT (RecName: Full=PDZ and LIM domain protein 7; AltName: Full=LIM mineralization protein; Short=LMP; AltName: Full=Protein enigma) HSP 1 Score: 62.3882 bits (150), Expect = 1.135e-9 Identity = 30/71 (42.25%), Postives = 39/71 (54.93%), Query Frame = 0 Query: 53 WGFRLQGGKDRGIPFQIQKVPINSVAGLGGCRPNDYLVQINGRNVFELTHDEAKNLITNSGESLDLVIERG 123 WGFRLQGGKD +P I ++ A G D+++ I+G N LTH EA+N I GE L L + R Sbjct: 14 WGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIEAQNKIRACGERLSLGLSRA 84
BLAST of pdz and lim domain protein 3 vs. SwissProt
Match: gi|83288381|sp|Q3TJD7.1|PDLI7_MOUSE (RecName: Full=PDZ and LIM domain protein 7; AltName: Full=LIM mineralization protein; Short=LMP; AltName: Full=Protein enigma) HSP 1 Score: 62.3882 bits (150), Expect = 1.135e-9 Identity = 30/74 (40.54%), Postives = 40/74 (54.05%), Query Frame = 0 Query: 53 WGFRLQGGKDRGIPFQIQKVPINSVAGLGGCRPNDYLVQINGRNVFELTHDEAKNLITNSGESLDLVIERGDNI 126 WGFRLQGGKD +P I ++ A G D+++ I+G N LTH EA+N I GE L L + R + Sbjct: 14 WGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLNIDGENAGSLTHIEAQNKIRACGERLSLGLSRAQPV 87
BLAST of pdz and lim domain protein 3 vs. SwissProt
Match: gi|212276492|sp|Q9H987.3|SYP2L_HUMAN (RecName: Full=Synaptopodin 2-like protein) HSP 1 Score: 62.3882 bits (150), Expect = 1.459e-9 Identity = 30/70 (42.86%), Postives = 40/70 (57.14%), Query Frame = 0 Query: 53 WGFRLQGGKDRGIPFQIQKVPINSVAGLGGCRPNDYLVQINGRNVFELTHDEAKNLITNSGESLDLVIER 122 WGFRL GG ++ P Q+ K+ S AG G R D L+ ING + L+H A +LI SG L L ++R Sbjct: 17 WGFRLHGGAEQRKPLQVSKIRRRSQAGRAGLRERDQLLAINGVSCTNLSHASAMSLIDASGNQLVLTVQR 86
BLAST of pdz and lim domain protein 3 vs. SwissProt
Match: gi|82201474|sp|Q6INU3.1|PDLI7_XENLA (RecName: Full=PDZ and LIM domain protein 7) HSP 1 Score: 61.6178 bits (148), Expect = 2.138e-9 Identity = 35/92 (38.04%), Postives = 48/92 (52.17%), Query Frame = 0 Query: 53 WGFRLQGGKDRGIPFQIQKVPINSVAGLGGCRPNDYLVQINGRNVFELTHDEAKNLITNSGESLDLVIERGDNIVPSMGHMFPKAKKDPPAQ 144 WGFRLQGGKD +P I ++ + L G D+L+QI G + +TH EA+N I S L LV+ R ++G PK P +Q Sbjct: 14 WGFRLQGGKDFNMPLSISRLTPGGKSELAGVNVGDWLLQIEGDSTASMTHIEAQNKIRASSNKLGLVLSRF-----AVGANHPKGVHTPESQ 100
BLAST of pdz and lim domain protein 3 vs. SwissProt
Match: gi|82084251|sp|Q679P3.1|PDLI7_CHICK (RecName: Full=PDZ and LIM domain protein 7; AltName: Full=LIM mineralization protein; Short=LMP) HSP 1 Score: 60.077 bits (144), Expect = 7.014e-9 Identity = 28/73 (38.36%), Postives = 40/73 (54.79%), Query Frame = 0 Query: 53 WGFRLQGGKDRGIPFQIQKVPINSVAGLGGCRPNDYLVQINGRNVFELTHDEAKNLITNSGESLDLVIERGDN 125 WGFRLQGGKD +P I ++ A G D+++ I+G + +TH EA+N I G+ L L + R N Sbjct: 14 WGFRLQGGKDFSMPLSISRLTPGGKAAQAGVGVGDWVLYIDGESTGTMTHIEAQNRIRACGDRLCLTLSRAQN 86
BLAST of pdz and lim domain protein 3 vs. SwissProt
Match: gi|78099787|sp|O70400.4|PDLI1_MOUSE (RecName: Full=PDZ and LIM domain protein 1; AltName: Full=C-terminal LIM domain protein 1; AltName: Full=Elfin; AltName: Full=LIM domain protein CLP-36) HSP 1 Score: 59.3066 bits (142), Expect = 9.668e-9 Identity = 42/147 (28.57%), Postives = 66/147 (44.90%), Query Frame = 0 Query: 53 WGFRLQGGKDRGIPFQIQKVPINSVAGLGGCRPNDYLVQINGRNVFELTHDEAKNLITNSGESLDLVIERGDNIVPSMGHMFPKAKKDPPAQELPSKPKPYYQRHLEETGELPGQQNKGFTTVGKP--KMTTKQYMSPLEMYGEEAL 197 WGFRL GGKD P I +V S A + D + I+G + +TH EA+N I +++ L + R + + S + + K+ P L S+P+ + G + FT P ++ T QY SP +Y E + Sbjct: 14 WGFRLVGGKDFEQPLAISRVTPGSKAAIANLCIGDLITAIDGEDTSSMTHLEAQNKIKGCADNMTLTVSRSEQKIWS-PLVTEEGKRHPYKMNLASEPQ-----EVLHIGSAHNRSAMPFTASPAPSTRVITNQYNSPTGLYSSENI 154
BLAST of pdz and lim domain protein 3 vs. nr
Match: gi|1325272751|ref|XP_023321008.1| (PDZ and LIM domain protein 1-like isoform X1 [Eurytemora affinis]) HSP 1 Score: 253.832 bits (647), Expect = 1.049e-80 Identity = 125/224 (55.80%), Postives = 163/224 (72.77%), Query Frame = 0 Query: 12 PLNSIVNTAESTIFPTYSGGLDHDRQGLISCILRKKNLSETWGFRLQGGKDRGIPFQIQKVPINSVAGLGGCRPNDYLVQINGRNVFELTHDEAKNLITNSGESLDLVIERGDNIVPSMGHMFPKAKKDPPAQELPSKPKPYYQRHLEETGELPGQQNKGFTTVGKPKMTTKQYMSPLEMYGEEALEEILDQGTIFGKEINVLNPWNMTGKELDLNKSSVLNSI 235 P++ +VNT E T F SG ++GLI+ LR++N ++ WGFRLQGGKDRG+PFQ+ KVP++SVA GC+ DYLV+I G VF LTHD+A + I +G L +V+ERG+ I P++ FPK K++P E+ +KPKPYYQ+ LE TGE+PGQ+NKGFTTVGK KM TKQY SPL MY E+ ++EI+ QGT GKEI+ NPWNMTGK D KS VL++I Sbjct: 4 PVHDVVNTEEET-FRASSGS---SQKGLITVTLRRENTNQPWGFRLQGGKDRGLPFQLLKVPLDSVASHCGCQTGDYLVKICGEEVFSLTHDQALSRIKKAGNELSMVVERGEKICPTINEAFPKQKQEPV--EVDTKPKPYYQQVLERTGEMPGQKNKGFTTVGKAKMATKQYNSPLAMYSEDIIDEIMTQGTALGKEIDPGNPWNMTGKTFDAAKSGVLSAI 221
BLAST of pdz and lim domain protein 3 vs. nr
Match: gi|1325272753|ref|XP_023321009.1| (PDZ and LIM domain protein Zasp-like isoform X2 [Eurytemora affinis]) HSP 1 Score: 204.912 bits (520), Expect = 8.676e-62 Identity = 109/224 (48.66%), Postives = 142/224 (63.39%), Query Frame = 0 Query: 12 PLNSIVNTAESTIFPTYSGGLDHDRQGLISCILRKKNLSETWGFRLQGGKDRGIPFQIQKVPINSVAGLGGCRPNDYLVQINGRNVFELTHDEAKNLITNSGESLDLVIERGDNIVPSMGHMFPKAKKDPPAQELPSKPKPYYQRHLEETGELPGQQNKGFTTVGKPKMTTKQYMSPLEMYGEEALEEILDQGTIFGKEINVLNPWNMTGKELDLNKSSVLNSI 235 P++ +VNT E T F SG ++GLI+ LR++N ++ WGFRLQ G DYLV+I G VF LTHD+A + I +G L +V+ERG+ I P++ FPK K++P E+ +KPKPYYQ+ LE TGE+PGQ+NKGFTTVGK KM TKQY SPL MY E+ ++EI+ QGT GKEI+ NPWNMTGK D KS VL++I Sbjct: 4 PVHDVVNTEEET-FRASSGS---SQKGLITVTLRRENTNQPWGFRLQTG--------------------------DYLVKICGEEVFSLTHDQALSRIKKAGNELSMVVERGEKICPTINEAFPKQKQEPV--EVDTKPKPYYQQVLERTGEMPGQKNKGFTTVGKAKMATKQYNSPLAMYSEDIIDEIMTQGTALGKEIDPGNPWNMTGKTFDAAKSGVLSAI 195
BLAST of pdz and lim domain protein 3 vs. nr
Match: gi|225713334|gb|ACO12513.1| (PDZ and LIM domain protein 3 [Lepeophtheirus salmonis]) HSP 1 Score: 172.17 bits (435), Expect = 4.018e-49 Identity = 91/194 (46.91%), Postives = 121/194 (62.37%), Query Frame = 0 Query: 39 LISCILRKKNLSETWGFRLQGGKDRGIPFQIQKVPINSVAGLGGCRPNDYLVQINGRNVFELTHDEAKNLITNSGESLDLVIERGDNIVPSMGHMFPKAKKDPPAQELPSKPKPYYQRHLEETGELPGQQNKGFTTVGKPKMTTKQYMSPLEMYGEEALEEILDQGTIFGKEINVLNPWNMTGKELDLNKSSVL 232 I L + N WG R+ GGKDRG ++KV S+A G R DY+V++NG VF+L H++ LI +G SL + IERGDNI+P++ FPK K P P KP+PY+ R +E + + + GFTTVGKPK++ KQY SP EMY EEAL+EI+ +GT+ G IN N N TG+E D N+SSVL Sbjct: 5 FIEVELIRPNERTPWGLRIGGGKDRGRVLVLEKVTCPSLAYTKGLRAKDYIVEVNGVEVFDLEHNQCACLIKTAGTSLTIKIERGDNIIPNLELAFPKKKASPENSSEPIKPRPYWIRSIESGQGV--RSSSGFTTVGKPKISAKQYNSPFEMYSEEALDEIMKEGTLDGNPINFDNIMNPTGREFDSNQSSVL 196
BLAST of pdz and lim domain protein 3 vs. nr
Match: gi|669193513|gb|AII16462.1| (PDZ and LIM domain protein 1, partial [Paracyclopina nana]) HSP 1 Score: 120.168 bits (300), Expect = 3.559e-29 Identity = 63/158 (39.87%), Postives = 99/158 (62.66%), Query Frame = 0 Query: 50 SETWGFRLQGGKDRGIPFQIQKVPINSVAGLGGCRPNDYLVQINGRNVFELTHDEAKNLITNSGESLDLVIERGDNIVPSMGHMFPKAKKDPPAQELPSKPKP--YYQRHLEETGELPGQQNKGFTTVGKPKMTTKQYMSPLEMYGEEALEEILDQGT 205 ++ +GFR+ GGKD G F+++KV A GG + +D+LV ING+ VF+++H + + N+G +L+L +ERGD IVP+ ++P K ++ PS P+ Y H G +PGQ+N F+TVGKPK+T QY +P++ Y EE L+E+ + T Sbjct: 3 NQAFGFRIIGGKDEGQTFKVEKVLTGYPASYGGLKVHDFLVSINGQEVFDMSHAQLVQTVKNAGMTLNLQVERGDFIVPNFEEIWPSGKSK--NKKGPSGPETGIDYILHASTVG-IPGQRNLNFSTVGKPKVTVNQYDNPIQCYSEETLDEMTNSST 157
BLAST of pdz and lim domain protein 3 vs. nr
Match: gi|1325278272|ref|XP_023323780.1| (PDZ and LIM domain protein 1-like isoform X1 [Eurytemora affinis]) HSP 1 Score: 119.398 bits (298), Expect = 1.805e-28 Identity = 69/168 (41.07%), Postives = 100/168 (59.52%), Query Frame = 0 Query: 39 LISCILRKKNLSETWGFRLQGGKDRGIPFQIQKVPINSVAGLGGCRPNDYLVQINGRNVFELTHDEAKNLITNSGESLDLVIERGDNIVPSMGHMFPKAKKDPPAQELPSKP----KPYYQRHLEETGELPGQQNKGFTTVGKPKMT-TKQYMSPLEMYGEEALEEIL 201 +++ LR+K S WGF L GG D+G +I V SVA L G DYL ++NG++VF LTH + LI ++G +LDL IERG+NIVPS ++ K KK + ++ K YY+ +++ G LPG+ FTTVGKP KQY +P+++Y + L E+L Sbjct: 5 MLTVHLRRKTTSTPWGFSLTGGPDQGFALKIGTVREESVADLAGLNKMDYLWKVNGQSVFGLTHKQCAQLIKSAGLNLDLEIERGENIVPSFTQIY-KLKKQNSSPQIQRKDCLTGDAYYKAAMKDHG-LPGKIPTKFTTVGKPFFIENKQYNTPIDVYNDSVLNEML 170
BLAST of pdz and lim domain protein 3 vs. nr
Match: gi|669193515|gb|AII16463.1| (PDZ and LIM domain protein 3, partial [Paracyclopina nana]) HSP 1 Score: 113.235 bits (282), Expect = 2.259e-26 Identity = 63/169 (37.28%), Postives = 100/169 (59.17%), Query Frame = 0 Query: 39 LISCILRKKNLSETWGFRLQGGKDRGIPFQIQKVPINSVAGLGGCRPNDYLVQINGRNVFELTHDEAKNLITNSGESLDLVIERGDNIVPSMGHMFPKAKKDPPAQELPSKPKPYYQRHL----EETGELPGQQNKGFTTVGKPKMTTKQYMSPLEMYGEEALEEILDQ 203 +++ + + + + WGF + GGKD+ + ++ KV S A G +P DY+ INGR VFE++H+E N I N+G +L L ERGD+IVP+ ++P K P + P + YY + + +G LP N FTTVGKP++ QY SPL++Y ++ LEE+ ++ Sbjct: 5 ILNITIERPSTNVPWGFVIIGGKDQALTVKVGKVKPYSPAEKAGLKPCDYIYTINGREVFEMSHNECVNEIKNTGTTLCLSTERGDHIVPNFEEIWPSKKG--PKADRPKRGLEYYYDAMVNGPQLSGFLPIPPN--FTTVGKPQIVVNQYDSPLDVYSDDTLEEMKEE 169
BLAST of pdz and lim domain protein 3 vs. nr
Match: gi|290562191|gb|ADD38492.1| (PDZ and LIM domain protein 3 [Lepeophtheirus salmonis]) HSP 1 Score: 112.464 bits (280), Expect = 4.557e-26 Identity = 73/217 (33.64%), Postives = 116/217 (53.46%), Query Frame = 0 Query: 39 LISCILRKKNLSETWGFRLQGGKDRGIPFQIQKVPINSVAGLGGCRPNDYLVQINGRNVFELTHDEAKNLITNSGESLDLVIERGDNIVPSMGHMFPKAKKDPPAQELPSKPKPYYQRHL---EETGELPGQQNKGFTTVGKPKMTTKQYMSPLEMYGEEALEEILDQGTIFGKEINVLNP-----------------WNMTGKELDLNKSSVLNSI 235 +++ L++ +E WGF + GGKD+ + ++ K+ S A G + DY+ QING+ VFE++H++ I SG SL L ERGD+IVP+ ++P +KK P A+ + YY + +G LP N FTTVGKP++ QY P+++Y E+ LEE+ ++ I ++NP M G++ D KS+ LN+I Sbjct: 5 IVNLALKRSGKNEPWGFVIIGGKDQNLTVKVGKIKPYSPAEEAGLKTMDYVWQINGKEVFEMSHNDCVKEIKESGTSLSLSTERGDHIVPNFEEIWP-SKKGPKAERRKRGLEYYYDAMTNGPQLSGFLPLAPN--FTTVGKPQIYVNQYDCPIQVYSEDTLEEMKEE------RITMMNPDLVDRIQDKVPQSDNPMAIMQGRKFDPTKSNALNAI 212
BLAST of pdz and lim domain protein 3 vs. nr
Match: gi|225713230|gb|ACO12461.1| (PDZ and LIM domain protein 3 [Lepeophtheirus salmonis] >gi|225714146|gb|ACO12919.1| PDZ and LIM domain protein 3 [Lepeophtheirus salmonis] >gi|290462547|gb|ADD24321.1| PDZ and LIM domain protein 3 [Lepeophtheirus salmonis]) HSP 1 Score: 112.079 bits (279), Expect = 5.502e-26 Identity = 73/217 (33.64%), Postives = 116/217 (53.46%), Query Frame = 0 Query: 39 LISCILRKKNLSETWGFRLQGGKDRGIPFQIQKVPINSVAGLGGCRPNDYLVQINGRNVFELTHDEAKNLITNSGESLDLVIERGDNIVPSMGHMFPKAKKDPPAQELPSKPKPYYQRHL---EETGELPGQQNKGFTTVGKPKMTTKQYMSPLEMYGEEALEEILDQGTIFGKEINVLNP-----------------WNMTGKELDLNKSSVLNSI 235 +++ L++ +E WGF + GGKD+ + ++ K+ S A G + DY+ QING+ VFE++H++ I SG SL L ERGD+IVP+ ++P +KK P A+ + YY + +G LP N FTTVGKP++ QY P+++Y E+ LEE+ ++ I ++NP M G++ D KS+ LN+I Sbjct: 5 IVNLALKRSGKNEPWGFVIIGGKDQNLTVKVGKIKPYSPAEEAGLKTMDYVWQINGKEVFEMSHNDCVKEIKESGTSLSLSTERGDHIVPNFEEIWP-SKKGPKAERRKRGLEYYYDAMTNGPQLSGFLPLAPN--FTTVGKPQIYVNQYDCPIQVYSEDTLEEMKEE------RITMMNPDLVDRIQDKVPQSDNPMALMQGRKFDPTKSNALNAI 212
BLAST of pdz and lim domain protein 3 vs. nr
Match: gi|225717808|gb|ACO14750.1| (PDZ and LIM domain protein 1 [Caligus clemensi]) HSP 1 Score: 110.153 bits (274), Expect = 3.027e-25 Identity = 74/212 (34.91%), Postives = 114/212 (53.77%), Query Frame = 0 Query: 39 LISCILRKKNLSETWGFRLQGGKDRGIPFQIQKVPINSVAGLGGCRPNDYLVQINGRNVFELTHDEAKNLITNSGESLDLVIERGDNIVPSMGHMFPKAKKDPPAQELPSKPKPYYQRHL---EETGELPGQQNKGFTTVGKPKMTTKQYMSPLEMYGEEALEEILDQ----------GTIFGKEINVLNPWN-MTGKELDLNKSSVLNSIR 236 +++ L++ + WGF + GGKD+ + ++ KV S A G + DY+ QING+ VFE+TH++ I SG +L L ERGD+IVP+ ++P +KK P A+ + YY + +G LP N FTTVGKP + QY P+++Y E+ LEE+ ++ I K NP M G++ D KS+ LN+I+ Sbjct: 5 IVNLSLKRSGKNVPWGFVIIGGKDQNLTAKVGKVKPYSSAEEAGLKMMDYVWQINGKEVFEMTHNDCVKAIKESGTTLSLSTERGDHIVPNFEEIWP-SKKGPKAERRKRGLEYYYDAMTNGPQLSGFLPLAPN--FTTVGKPHIYVNQYDCPIDVYSEDTLEEMKEERITLMNPDVADRIQDKVPTCDNPMALMQGRKFDPTKSNALNAIQ 213
BLAST of pdz and lim domain protein 3 vs. nr
Match: gi|225712554|gb|ACO12123.1| (PDZ and LIM domain protein 3 [Lepeophtheirus salmonis]) HSP 1 Score: 109.383 bits (272), Expect = 7.914e-25 Identity = 72/211 (34.12%), Postives = 114/211 (54.03%), Query Frame = 0 Query: 39 LISCILRKKNLSETWGFRLQGGKDRGIPFQIQKVPINSVAGLGGCRPNDYLVQINGRNVFELTHDEAKNLITNSGESLDLVIERGDNIVPSMGHMFPKAKKDPPAQELPSKPKPYYQRHL---EETGELPGQQNKGFTTVGKPKMTTKQYMSPLEMYGEEALEEILDQ----------GTIFGKEINVLNPWNMT-GKELDLNKSSVLNSI 235 +++ L++ +E WGF + GGKD+ + ++ K+ A G + DY+ QING+ VFE++H++ I SG SL L ERGD+IVP+ ++P +KK P A+ + YY + +G LP N FTTVGKP++ QY P+++Y E+ LEE+ ++ I K NP + G++ D KS+ LN+I Sbjct: 5 IVNLALKRSGKNEPWGFVIIGGKDQNLTVKVGKIKPYGPAEEAGLKTMDYVWQINGKEVFEMSHNDCVKEIKESGTSLSLSTERGDHIVPNFEEIWP-SKKGPKAERRKRGLEYYYDAMTNGPQLSGFLPLAPN--FTTVGKPQIYVNQYDCPIQVYSEDTLEEMKEERITMMNPDLVDRIQDKVPQSDNPMALVQGRKFDPTKSNALNAI 212 The following BLAST results are available for this feature:
BLAST of pdz and lim domain protein 3 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 4
BLAST of pdz and lim domain protein 3 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of pdz and lim domain protein 3 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold261_size233860:161179..174470+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold261_size233860-snap-gene-1.24 ID=maker-scaffold261_size233860-snap-gene-1.24|Name=pdz and lim domain protein 3|organism=Tigriopus kingsejongensis|type=gene|length=13292bp|location=Sequence derived from alignment at scaffold261_size233860:161179..174470+ (Tigriopus kingsejongensis)back to top Synonyms
The feature 'pdz and lim domain protein 3' has the following synonyms
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