hypothetical protein PHYSODRAFT_302006, maker-scaffold365_size194585-snap-gene-0.23 (gene) Tigriopus kingsejongensis
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Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of hypothetical protein PHYSODRAFT_302006 vs. L. salmonis genes
Match: EMLSAG00000003955 (supercontig:LSalAtl2s:LSalAtl2s211:994215:1002048:1 gene:EMLSAG00000003955 transcript:EMLSAT00000003955 description:"augustus_masked-LSalAtl2s211-processed-gene-10.7") HSP 1 Score: 130.568 bits (327), Expect = 6.468e-38 Identity = 72/168 (42.86%), Postives = 103/168 (61.31%), Query Frame = 0
Query: 56 FRCGVFSFFGNDRACRISCWVTGHKTGRCDEEDSCNCSETDLDISESIDKLLDGLDVFEYVEEKWNQFVGEVKSWELPASIKSLAPSRCKIGNGFCAGSCHTIGRKDGKCNEDFSDCKCSDEVVTPKQYSLCLDDGICSLVCQRDGSARGECLGPDNWDCRCFSNKES 223
FRCG + AC+++C TGH TG+CD + CNCSE DLD+S+ ID +LDG+D+ + + EK +F SW++ SIK +C +GR++G CN D +DC C DE V+P+Q++LC++D IC + CQR G ARG+C G WDC C ++K S
Sbjct: 23 FRCGYLGEW----ACKLTCKATGHTTGKCDAKTECNCSEKDLDVSKEIDDILDGIDIRDKISEKVTEFTNYASSWQIEESIKK--------------STCQAVGRRNGVCNSDNTDCDCDDEFVSPRQWALCVEDAICRVDCQRKGYARGKCEGEFGWDCNCITSKGS 172
BLAST of hypothetical protein PHYSODRAFT_302006 vs. L. salmonis genes
Match: EMLSAG00000006970 (supercontig:LSalAtl2s:LSalAtl2s396:202568:204244:1 gene:EMLSAG00000006970 transcript:EMLSAT00000006970 description:"maker-LSalAtl2s396-augustus-gene-2.14") HSP 1 Score: 79.7221 bits (195), Expect = 5.303e-19 Identity = 60/188 (31.91%), Postives = 83/188 (44.15%), Query Frame = 0
Query: 32 TMKLLIPVLVALSAIAPLETEAVKFRCGVFSFFGNDRACRISCWVTGHKTGRCDEEDSCNCSETDLDISESIDKLLDGLDVFEYVEEKWNQFVGEVKSWELPASIKSLAPSRCKIGNGFCAGSCHTIGRKDGKCNEDFSDCKCSDEVVTPKQYSLCLDDGICSLVCQRDGSARGECLGPDNWDCRCFS 219
T K++ V V S + E FRC FFG D AC C V G +G C + C CSE + I + K+L SRC +G FC +C +IGR +G C ++DC C+DE+++P + +LC + C++ CQ G A GEC G W C C S
Sbjct: 2 TSKIICAVFVFASLVNLNE---AGFRC----FFG-DWACTAGCTVMGQTSGICGHDGKCWCSERRISIK----------------------------------NFKALLXSRCTLGEEFCNATCQSIGRVNGTC--AYNDCSCADELISPDELALCTIESNCNVYCQGSGRAGGECRG---WSCVCTS 142
BLAST of hypothetical protein PHYSODRAFT_302006 vs. L. salmonis genes
Match: EMLSAG00000009369 (supercontig:LSalAtl2s:LSalAtl2s599:352791:354595:-1 gene:EMLSAG00000009369 transcript:EMLSAT00000009369 description:"maker-LSalAtl2s599-snap-gene-3.41") HSP 1 Score: 61.6178 bits (148), Expect = 4.017e-12 Identity = 52/173 (30.06%), Postives = 75/173 (43.35%), Query Frame = 0
Query: 57 RCGVFSFFGNDRACRISCWVTGHKTGRC----DEEDSCNCSETDLDISESIDKLLDGLDVFEYVEEKWNQFVGEVKSWELPASIKSLAPSRCKIGNGFCAGSCHTIGRKDGKCNEDFSDCKCSDEVVTPKQYSLCLDDGICSLVCQ-RDGSARGECLGPDNWDCRCFSNKESN 224
RCG+ + C+ +C + GH G C D SC CSE DL+ K + G DV P +I AG C GR+ G C+ ++C C+ E + C++D +CS+ CQ ++ A G C GP+ WDC+C+S KE N
Sbjct: 42 RCGL-----TESVCKWTCRLGGHSGGFCSPDADGGSSCICSEEDLE------KYVCGGDV---------------------------GP---EIAGXSXAGFCQAKGRQSGNCDLIKNECACTKEYLQLSHIK-CINDEVCSVFCQYKERKANGRCEGPNKWDCKCYSMKELN 172
BLAST of hypothetical protein PHYSODRAFT_302006 vs. L. salmonis genes
Match: EMLSAG00000009368 (supercontig:LSalAtl2s:LSalAtl2s599:336881:337404:-1 gene:EMLSAG00000009368 transcript:EMLSAT00000009368 description:"snap_masked-LSalAtl2s599-processed-gene-3.11") HSP 1 Score: 56.9954 bits (136), Expect = 1.627e-10 Identity = 29/69 (42.03%), Postives = 40/69 (57.97%), Query Frame = 0
Query: 150 FCAGSCHTIGRKDGKCNEDFSDCKCSDEVVTPKQYSLCLDDGICSLVCQ-RDGSARGECLGPDNWDCRC 217
CAG C IGR+ G C + C+CS E + LC+ + +CS+ CQ G + G+C GP+NWDC C
Sbjct: 67 MCAGYCQVIGRQTGNCENNV--CECSRERFYLSRDYLCVANEVCSMHCQIVRGGSNGKCSGPNNWDCEC 133
BLAST of hypothetical protein PHYSODRAFT_302006 vs. nr
Match: gi|1148368765|gb|AQS22625.1| (hypothetical protein [Pseudodiaptomus poplesia]) HSP 1 Score: 94.3597 bits (233), Expect = 1.407e-20 Identity = 66/189 (34.92%), Postives = 86/189 (45.50%), Query Frame = 0
Query: 35 LLIPVLVALSAIAPLETEAVKFRCGVFSFFGNDRACRISCWVTGHKTGRCDEEDSCNCSETDLDISESIDKLLDGLDVFEYVEEKWNQFVGEVKSWELPASIKSLAPSRCKIGNGFCAGSCHTIGRKDGKCNEDFSDCKCSDEVVTPKQYSLCLDDGICSLVCQRDGSARGECLGPDNWDCRCFSNKES 223
LLI VL+ TEA FRC FFGN AC C V G +G CD + C+CSE ++I N F +++ PSRC +G C G+CH IGR G C + DC CSD ++P +++LC + C + CQ G A G C D W C C SN+ S
Sbjct: 9 LLITVLLPF-------TEA-GFRC----FFGN-WACTAGCVVLGQSSGLCDSDKICHCSENKINI---------------------NHF-------------RAMLPSRCLLGQSACEGTCHAIGRSTGVCKNN--DCACSDTYISPSEFALCAAESTCRMHCQSGGYATGNC---DGWACNCVSNRNS 145
BLAST of hypothetical protein PHYSODRAFT_302006 vs. nr
Match: gi|1148368781|gb|AQS22633.1| (hypothetical protein [Pseudodiaptomus poplesia]) HSP 1 Score: 92.0485 bits (227), Expect = 1.074e-19 Identity = 64/189 (33.86%), Postives = 87/189 (46.03%), Query Frame = 0
Query: 35 LLIPVLVALSAIAPLETEAVKFRCGVFSFFGNDRACRISCWVTGHKTGRCDEEDSCNCSETDLDISESIDKLLDGLDVFEYVEEKWNQFVGEVKSWELPASIKSLAPSRCKIGNGFCAGSCHTIGRKDGKCNEDFSDCKCSDEVVTPKQYSLCLDDGICSLVCQRDGSARGECLGPDNWDCRCFSNKES 223
LLI VL+ TEA FRC FFGN AC C + G +G CD + C+CS+ ++I N F +++ PSRC +G C G+CH IGR G C + DC CSD ++P +++LC + C + CQ G A G C+G W C C SN+ S
Sbjct: 9 LLISVLLPF-------TEA-GFRC----FFGN-WACTAGCVMLGQSSGLCDSDKICHCSKNKINI---------------------NHF-------------RAMLPSRCLLGQSACEGTCHAIGRSTGVCKNN--DCACSDTYISPSEFALCAAESTCRMHCQSGGYATGNCVG---WACNCVSNRNS 145
BLAST of hypothetical protein PHYSODRAFT_302006 vs. nr
Match: gi|1325281253|ref|XP_023325302.1| (teneurin-3-like [Eurytemora affinis]) HSP 1 Score: 90.1225 bits (222), Expect = 6.149e-19 Identity = 62/197 (31.47%), Postives = 92/197 (46.70%), Query Frame = 0
Query: 35 LLIPVLVALSAIAPLETEAVKFRCGVFSFFGNDRACRISCWVTGHKTGRCDEEDSCNCSETDLDISESIDKLLDGLDVFEYVEEKWNQFVGEVKSWELPASIKSLAPSRCKIGNGFCAGSCHTIGRKDGKCNEDFSDCKCSDEVVTPKQYSLCLDDGICSLVCQRDGSARGECLGPDNWDCRCFSNK-ESNPELDDL 230
++ L+ ++A+ PL + FRC FGN AC C G +G CD C+CSE + ++ S K L PSRC +G+ FC G+CH +GR +G C ++ +C CS+ +TP ++ LC + C CQ +GSA G CLG W C C S++ E+ L+ L
Sbjct: 1 MMFKSLILVAALVPLCSAG--FRCT----FGN-WACTTGCVFLGQTSGVCDANWDCHCSEKSISLN----------------------------------SFKRLLPSRCLLGDSFCEGTCHAMGRSNGTCKDN--NCSCSNTYLTPSEFLLCAAESTCRTHCQANGSATGVCLG---WSCECKSSEAEAGSALEVL 151
BLAST of hypothetical protein PHYSODRAFT_302006 vs. nr
Match: gi|1325274451|ref|XP_023321879.1| (uncharacterized protein LOC111696498 [Eurytemora affinis]) HSP 1 Score: 85.8853 bits (211), Expect = 2.763e-17 Identity = 57/188 (30.32%), Postives = 84/188 (44.68%), Query Frame = 0
Query: 33 MKLLIPVLVALSAIAPLETEAVKFRCGVFSFFGNDRACRISCWVTGHKTGRCDEEDSCNCSETDLDISESIDKLLDGLDVFEYVEEKWNQFVGEVKSWELPASIKSLAPSRCKIGNGFCAGSCHTIGRKDGKCNEDFS---DCKCSDEVVTPKQYSLCLDDGICSLVCQRDGSARGECLGPDNWDCRC 217
M LI L++ + + E RC + D C + C + G +G CD + +C+CSE + I E K L PSRC +G+ FC G+C+ IGR++G C S DC CSD+ +TPK+++LC + C L C+ G G+C+G W C C
Sbjct: 1 MNFLILSLLSFTMVVHSE---AGLRCAL-----GDVGCTVGCVLLGKTSGICDGDGNCHCSEKSIGIQE----------------------------------FKDLLPSRCDLGDKFCEGTCNAIGRRNGTCTTLESGKKDCTCSDDYLTPKEFALCAAETTCYLNCKAQGLGSGKCVG---WKCTC 143 The following BLAST results are available for this feature:
BLAST of hypothetical protein PHYSODRAFT_302006 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 4
BLAST of hypothetical protein PHYSODRAFT_302006 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 0
BLAST of hypothetical protein PHYSODRAFT_302006 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 4
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold365_size194585:173490..176071+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold365_size194585-snap-gene-0.23 ID=maker-scaffold365_size194585-snap-gene-0.23|Name=hypothetical protein PHYSODRAFT_302006|organism=Tigriopus kingsejongensis|type=gene|length=2582bp|location=Sequence derived from alignment at scaffold365_size194585:173490..176071+ (Tigriopus kingsejongensis)back to top Synonyms
The feature 'hypothetical protein PHYSODRAFT_302006' has the following synonyms
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