pms1 protein homolog 1 isoform c, maker-scaffold470_size172058-snap-gene-0.39 (gene) Tigriopus kingsejongensis

Overview


Name	pms1 protein homolog 1 isoform c
Unique Name	maker-scaffold470_size172058-snap-gene-0.39
Type	gene
Organism	Tigriopus kingsejongensis (Tigriopus kingsejongensis)

Associated RNAi Experiments

Nothing found

Homology

[Close]

BLAST of pms1 protein homolog 1 isoform c vs. L. salmonis genes
Match: EMLSAG00000011848 (supercontig:LSalAtl2s:LSalAtl2s831:305553:309700:1 gene:EMLSAG00000011848 transcript:EMLSAT00000011848 description:"maker-LSalAtl2s831-augustus-gene-3.12")

HSP 1 Score: 158.303 bits (399), Expect = 8.858e-40
Identity = 103/330 (31.21%), Postives = 168/330 (50.91%), Query Frame = 0

Query:   10 GRLSALPAATVARIGSGQIVTGPAAALKELLENALDAGATALQVGLLDHGLASLSVTDNGHGLAAEDLPLVARPHFTSKLRDFADLSALAFFGFRGEALHALAQTSRLTVASQIQADQDHGWQVEFDSDGQVQSRKPMAMNPGTSVICRDFFHHWPVRRNRYAQSGRKREELKKMEVLCQAFALVYPGLRLTLHHNKKALLEKPSAPDLA--GAIGLVLGFPTAQSMEKIEFEAESFRWEA--FVPVAKAAWGRSTADKSFVFVNRRPVEHRSILRVLKQTFSRAADLKTDKFPICVLVLEIEPNEVDVNLDPNKYSVLLRSEAEIVQSL 335
            G++  L    V RI +G ++  PA ALKE+LEN+LDA A  + V +   GL  L ++D+G G+  EDL +VA    TSKL  F DLS++A +GFRGEAL +++  + LT+ ++  AD + G++  ++    V   KP A N GT +I  + FH+   R+          EE  ++  +   +A+    +  TL     + +   + P+ +    IG + G   A+ + +++ +   F+++A  FV  A     + T     +F+N R V+  +I + L   +   A L     P   L LEIE   VDVN+ P K  V   ++ EIV  +
Sbjct:  391 GKILRLDEVVVNRIAAGXVIQRPANALKEMLENSLDAKANNISVIVEKGGLELLQISDDGTGIRKEDLEIVAERFTTSKLSKFEDLSSIATYGFRGEALASISHVALLTIITK-TADSNVGYKATYEDSKLVSQPKPTAANQGTQIIVENLFHNLASRKRALKNYS---EEYNRISDVVSKYAIHNSRVSFTLKKKGDSSVTVRTVPNSSPEANIGQIYGSNIAKELIELQIDDSEFQFKAQGFVSNANYNLKKFTM---LLFINHRLVDSSAIRKALIAVY--GAYLPKGTHPFVYLSLEIESQNVDVNVHPTKSEVQFLNQDEIVDRI 711

[Close]

BLAST of pms1 protein homolog 1 isoform c vs. L. salmonis genes
Match: EMLSAG00000001195 (supercontig:LSalAtl2s:LSalAtl2s119:448074:452320:1 gene:EMLSAG00000001195 transcript:EMLSAT00000001195 description:"maker-LSalAtl2s119-augustus-gene-4.12")

HSP 1 Score: 112.464 bits (280), Expect = 1.013e-25
Identity = 72/282 (25.53%), Postives = 140/282 (49.65%), Query Frame = 0

Query:   63 LSVTDNGHGLAAEDLPLVARPHFTSKLRDFADLSALAFFGFRGEALHALAQTSRLTVASQIQADQDHGWQVEFDSDGQVQSRKPMAMNPGTSVICRDFFHHWPVRRNRYAQSGRKREELKKMEVLCQAFALVYPGLRL----TLHHNKKALLEKPSAPDLAGAIGLVLGFPTAQSMEKIEFEAESFRWEAFVPVAKAAWGRSTADKSFVFVNRRPVEHRSILRVLKQTFSRAADLKTDKFPICVLVLEIEPNEVDVNLDPNKYSVLLRSEAEIVQSLSTSLT 340
            ++V+D+GHG+  ++   +                 +  FGFRGEAL +L   S+LTV ++   D   G ++ +D+ G++ S K ++ + GT+VI  D F+  PVRR  + +   KRE  K + VL  ++AL+  GL L     +   +  +L+     ++   +  V G  + +S+E++  E    +   ++   K   GR+ +D+ F+++N RP +   I R + +T+         ++P   L +     +VD+N+ P+K  + L +E  ++  +  +L 
Sbjct:    8 ITVSDDGHGVEPQNYTGLE----------------VDTFGFRGEALSSLCALSKLTVITRT-PDSKIGVELSYDNSGKLVSTKNISRDKGTTVILEDLFYSLPVRRAEFKKHV-KREFTKMLNVLT-SYALISTGLSLYCWNMVKGKRTTVLQTHGRSEIKETLKDVFGSKSIKSLEEVNGEEGMIKINGYISSVKHGEGRNASDRQFLYLNHRPADLNKIRRRINETY---KSYNRHQYPFLFLNIVTNKQKVDINVTPDKRQIFLENENSLIDFILQTLN 267

[Close]

BLAST of pms1 protein homolog 1 isoform c vs. L. salmonis genes
Match: EMLSAG00000011595 (supercontig:LSalAtl2s:LSalAtl2s800:379462:382291:1 gene:EMLSAG00000011595 transcript:EMLSAT00000011595 description:"maker-LSalAtl2s800-snap-gene-3.52")

HSP 1 Score: 83.5741 bits (205), Expect = 7.643e-17
Identity = 85/310 (27.42%), Postives = 139/310 (44.84%), Query Frame = 0

Query:  543 HNSSLDLVQSNRLKQQTLSTWSLGRAVMDS--NGDVVSPVTLGFGKPSSHPLAKRPKLERNGNESKPSKVSSRIGDATLGRLAAPLGTPTLDAKKRLKCVRKFKTIPISVTCLKASSQRPAPDHPKESFRLVGKLAHGGLWIALRDEQELTLMNHHRIEEQEIHLRLLSTYALRPTESLPHPINILIHKHWDPSLEAVLAGLVCNPKTSEVEDERVLLNGLAVKVIQNQDKPVEG-WLVGVSRSV-NFLGIDDLLALLKVIQDNPKADLATCRPRKVQAFLVAEAVRMIRQQPPGRDQAEAERLLELATS 848
            +NS  D + S   K  TL +W+ G+ + +S   G VV P+  G G        KRP + +   +  P K S   GD +L +L  P        K+ +K  R    +   +  L +        H  E   ++GKL+   +W  L +E  + +++  R  E  I+ +LL   AL P E +P+P+ I      D   E ++         +   D R+  NG  V         V+G +L     SV + + +DDL  +L +I+ NP A LA CR  K++ F   E ++++   PPG +  E   +L+L +S
Sbjct:  265 NNSKEDTINS---KMSTLHSWATGKTMPESPPVGMVV-PLMEGKG-------XKRPNVFKRIQDHHPPKKSRSYGDDSLIKLIKPYH-----QKETIKLHRHEVRVDFDIKKLHSKDCVSKSRHINE-LTVIGKLSDSEIWTGLLNES-IYVLHPSRFREISIYNKLLDAQALNPVE-MPYPMII------DKYREDII---------TLASDSRLSRNGFKV--------SVDGRYLTHSCHSVLSEIDVDDLFHILDIIKKNPTASLAECRSPKIKRFFQKECMKLVSNCPPGINNKE---MLQLYSS 529

HSP 2 Score: 55.4546 bits (132), Expect = 5.034e-8
Identity = 28/85 (32.94%), Postives = 48/85 (56.47%), Query Frame = 0

Query:  259 RSTADKSFVFVNRRPVEHRSILRVLKQTFSRAADLKTDKFPICVLVLEIEPNEVDVNLDPNKYSVLLRSEAEIVQSLSTSLTVHY 343
            RST D+ FV+VN RPVE   + R+LK+      D K   +PI ++ + +   ++D N++P+K +V  + E  I++ +   L   Y
Sbjct:   14 RSTNDRCFVYVNDRPVEMPKLSRLLKKYL---CDAKKKSYPIALVTINVPIKDIDANVEPSKKTVFFKQEESILKLVEAKLKELY 95

[Close]

BLAST of pms1 protein homolog 1 isoform c vs. SwissProt
Match: gi|1709683|sp|P54277.1|PMS1_HUMAN (RecName: Full=PMS1 protein homolog 1; AltName: Full=DNA mismatch repair protein PMS1)

HSP 1 Score: 218.779 bits (556), Expect = 3.579e-58
Identity = 118/360 (32.78%), Postives = 201/360 (55.83%), Query Frame = 0

Query:   12 LSALPAATVARIGSGQIVTGPAAALKELLENALDAGATALQVGLLDHGLASLSVTDNGHGLAAEDLPLVARPHFTSKLRDFADLSALAFFGFRGEALHALAQTSRLTVASQIQADQDHGWQVEFDSDGQVQSRKPMAMNPGTSVICRDFFHHWPVRRNRYAQSGRKREELKKMEVLCQAFALVYPGLRLTLHHNKKALLEKPSAPDLAGAIGLVLGFPTAQSMEKIEFEAE--SFRWEAFVPVAKA---AWGRSTADKSFVFVNRRPVEHRSILRVLKQTFS-RAADLKTDKFPICVLVLEIEPNEVDVNLDPNKYSVLLRSEAEIVQSLSTSLTVHYGPTDTVGGSPAVDSTNLNDSNV 365
            +  LPAATV  + S QI+T   + +KEL+EN+LDAGAT++ V L ++G   + V DNG G+ A D P++A  ++TSK+    DL  L  +GFRGEAL ++   + + + ++  AD +   Q   D  G + S+KP  +  GT+V     F + PVR+  Y+ + + ++E+KK++ L  +F ++ P LR+   HNK  + +K    D   A+  VLG     +ME  ++ +E        F+P   A       ST ++SF+F+N RPV  + IL++++  ++ +     T  +P+  L +++   +VDVNL P+K  VLL+++  ++ +L   +T  YGP       P+ +S   N ++V
Sbjct:    1 MKQLPAATVRLLSSSQIITSVVSVVKELIENSLDAGATSVDVKLENYGFDKIEVRDNGEGIKAVDAPVMAMKYYTSKINSHEDLENLTTYGFRGEALGSICCIAEVLITTRTAAD-NFSTQYVLDGSGHILSQKPSHLGQGTTVTALRLFKNLPVRKQFYSTAKKCKDEIKKIQDLLMSFGILKPDLRIVFVHNKAVIWQKSRVSDHKMALMSVLGTAVMNNMESFQYHSEESQIYLSGFLPKCDADHSFTSLSTPERSFIFINSRPVHQKDILKLIRHHYNLKCLKESTRLYPVFFLKIDVPTADVDVNLTPDKSQVLLQNKESVLIALENLMTTCYGPL------PSTNSYENNKTDV 353

HSP 2 Score: 70.8626 bits (172), Expect = 2.966e-11
Identity = 66/242 (27.27%), Postives = 110/242 (45.45%), Query Frame = 0

Query:  642 KFKTIPISVTCLKAS--SQRPAPDHPKESFRLVGKLAHGGLWIALRDEQELTLMNHHRIEEQEIHLRLLSTYALRPTESLPHPI----NILIHKHWDPSLEAVLAGLVCNPKTSEVEDERVLLNGLAVKVIQNQDKPVEGWLV--GVSRSVNFLGIDDLLALLKVIQDNPKADLATCRPRKVQAFLVAEAVRMIRQQPPGRDQAEAERLLELATSPKFPS---RCLHDKGHFERFFTLPTTT 872
            K   IP S+  LK +   Q       K+   L+  L     W+ +  + E+ L+N +R+EE  +  RLL  + L P E L  PI    ++    H+   L  + A       ++ + D R+  NG  +K+I       E +L   G++  + F G+ DL  +L  I +    ++  CRPRKV ++L  EAVR+ RQ P    + + + ++      +F +    C+H +  F     LP TT
Sbjct:  695 KMVQIPFSMKNLKINFKKQNKVDLEEKDEPCLIHNLRFPDAWL-MTSKTEVMLLNPYRVEEALLFKRLLENHKL-PAEPLEKPIMLTESLFNGSHYLDVLYKMTADDQRYSGSTYLSDPRLTANGFKIKLIPGVS-ITENYLEIEGMANCLPFYGVADLKEILNAILNRNAKEVYECRPRKVISYLEGEAVRLSRQLPMYLSKEDIQDII-YRMKHQFGNEIKECVHGRPFFHHLTYLPETT 932

[Close]

BLAST of pms1 protein homolog 1 isoform c vs. SwissProt
Match: gi|1064303045|sp|F1NQJ3.3|PMS2_CHICK (RecName: Full=Mismatch repair endonuclease PMS2; AltName: Full=DNA mismatch repair protein PMS2; AltName: Full=PMS1 protein homolog 2)

HSP 1 Score: 184.111 bits (466), Expect = 7.196e-47
Identity = 107/349 (30.66%), Postives = 178/349 (51.00%), Query Frame = 0

Query:   19 TVARIGSGQIVTGPAAALKELLENALDAGATALQVGLLDHGLASLSVTDNGHGLAAEDLPLVARPHFTSKLRDFADLSALAFFGFRGEALHALAQTSRLTVASQIQADQDHGWQVEFDSDGQVQSRKPMAMNPGTSVICRDFFHHWPVRRNRYAQSGRKREELKKMEVLCQAFALVYPGLRLTLHHN-----KKALLEKPSAPDLAGAIGLVLGFPTAQS------------------MEKIEFEAESFRWEAFVPVAKAAWGRSTADKSFVFVNRRPVEHRSILRVLKQTFSRAADLKTDKFPICVLVLEIEPNEVDVNLDPNKYSVLLRSEAEIVQSLSTSLTVHYG 344
            +V RI SGQ+V     A+KEL+EN+LDAGAT + V L DHG   + V+DNG G+  E+   +   H+TSK++DF+DL  +  FGFRGEAL +L   S +T+ S        G ++ FD +G++  + P     GT+V  +  FH  PVR   + ++ +K  E  KM  + QA+ ++  G+R+   +      K  ++     P+L   IG V G    QS                  ++  +   + +    F+       GRST D+ F F+N+RP +   +++++ + +         ++P  VL + ++   VD+N+ P+K  +LL+ E  ++  L TSL   +G
Sbjct:   21 SVHRICSGQVVLSLGTAVKELVENSLDAGATNIDVRLKDHGAELIEVSDNGGGVEEENFEGLTLKHYTSKIQDFSDLIHVETFGFRGEALSSLCALSDVTI-STCHKSAKVGTRLVFDHNGKITQKAPYPRQQGTTVSIQQLFHTLPVRHKEFQRNIKK--EYAKMVQILQAYCIISKGVRINCTNQVGQGKKSPVVSTTGGPNLKENIGAVFGKKQLQSLIPFVQLPPNEAVCEEYGLKSTDLPEKLYSITGFISRCDHGVGRSTTDRQFFFINQRPCDPAKVVKLVNEVYHL---YNKHQYPFIVLNICVDSECVDINVTPDKRQILLQEEKLLLAILKTSLIEMFG 363

[Close]

BLAST of pms1 protein homolog 1 isoform c vs. SwissProt
Match: gi|32129762|sp|Q87AC9.1|MUTL_XYLFT (RecName: Full=DNA mismatch repair protein MutL >gi|238691108|sp|B2I9E6.1|MUTL_XYLF2 RecName: Full=DNA mismatch repair protein MutL)

HSP 1 Score: 180.644 bits (457), Expect = 8.575e-47
Identity = 122/343 (35.57%), Postives = 188/343 (54.81%), Query Frame = 0

Query:   15 LPAATVARIGSGQIVTGPAAALKELLENALDAGATALQVGLLDHGLASLSVTDNGHGLAAEDLPLVARPHFTSKLRDFADLSALAFFGFRGEALHALAQTSRLTVASQIQADQDHG--WQVEFDSDGQVQSRKPMAMNPGTSVICRDFFHHWPVRRNRYAQSGRKREELKKMEVLCQAFALVYPGLRLTLHHNKKALLEKPSAPDLAGAIGL--VLGFPTAQSMEKIEFEAESFRWEAFVPVAKAAWGRSTADKSFVFVNRRPVEHRSILRVLKQTFSRAADLKTDKFPICVLVLEIEPNEVDVNLDPNKYSVLLRSEAEIVQSLSTSLTVHYGPTDTVGGSP 353
            LP   + +I +G++V  PA+ +KEL+ENA+DAGAT + + L   G+  + + DNGHG+AA++LPL    H TSK+    DL A+A  GFRGEAL ++A  SR T+ S+ +A  +HG   Q+E  + G+V    P A  PGT+V  R+ F++ P RR ++ ++  +R EL  +E   ++ AL +P L L L HN K L  +    D    + L  +LG   A    +++      R      + +  + R  AD+ +++VN RPV  RS+   +KQ +S    L   + P  VL LE++P  VDVN+ P K+ V  R +A ++       TV      T  G+P
Sbjct:    6 LPEILINQIAAGEVVERPASVVKELVENAIDAGATRVDIELEAAGVRLIRIRDNGHGMAAQELPLAVLRHATSKIASLDDLEAVATLGFRGEALPSIASVSRFTLMSR-RATDEHGAVLQIEGGTLGEV---IPHAHAPGTTVEVRELFYNVPARR-KFLRA--ERTELGHIEEWARSLALAHPDLELRLSHNGK-LSRRYKPGDWYSDVRLIEILGEDFAHQALRVDHSGAGLRLHGC--IVQPHYSRLNADQQYLYVNGRPVRDRSVAHAVKQAYSDV--LYQGRHPAYVLFLELDPARVDVNVHPAKHEVRFR-DARLIHDFVYR-TVQGTLAQTRAGTP 334

[Close]

BLAST of pms1 protein homolog 1 isoform c vs. SwissProt
Match: gi|238687954|sp|B0U5C6.1|MUTL_XYLFM (RecName: Full=DNA mismatch repair protein MutL)

HSP 1 Score: 179.874 bits (455), Expect = 2.077e-46
Identity = 121/342 (35.38%), Postives = 187/342 (54.68%), Query Frame = 0

Query:   15 LPAATVARIGSGQIVTGPAAALKELLENALDAGATALQVGLLDHGLASLSVTDNGHGLAAEDLPLVARPHFTSKLRDFADLSALAFFGFRGEALHALAQTSRLTVASQIQADQDHG--WQVEFDSDGQVQSRKPMAMNPGTSVICRDFFHHWPVRRNRYAQSGRKREELKKMEVLCQAFALVYPGLRLTLHHNKK-ALLEKPSAPDLAGAIGLVLGFPTAQSMEKIEFEAESFRWEAFVPVAKAAWGRSTADKSFVFVNRRPVEHRSILRVLKQTFSRAADLKTDKFPICVLVLEIEPNEVDVNLDPNKYSVLLRSEAEIVQSLSTSLTVHYGPTDTVGGSP 353
            LP   + +I +G++V  PA+ +KEL+ENA+DAGAT + + L   G+  + + DNGHG+AA++LPL    H TSK+    DL A+A  GFRGEAL ++A  SR T+ S+ +A  +HG   Q+E  + G+V    P A  PGT+V  R+ F++ P RR ++ ++  +R EL  +E   ++ AL +P L L L HN K +   KP        +  +LG   A    +++      R      + +  + R  AD+ +++VN RPV  RS+   +KQ +S    L   + P  VL LE++P  VDVN+ P K+ V  R +A ++       TV      T  G+P
Sbjct:    6 LPEILINQIAAGEVVERPASVVKELVENAIDAGATRVDIELEAAGVRLIRIRDNGHGMAAQELPLAVLRHATSKIASLDDLEAVATLGFRGEALPSIASVSRFTLMSR-RATDEHGAVLQIEGGTLGEV---IPHAHAPGTTVEVRELFYNVPARR-KFLRA--ERTELGHIEEWARSLALAHPDLELRLSHNGKLSRRYKPGDWYSDARLIEILGEDFAHQALRVDHSGAGLRLHGC--IVQPHYSRLNADQQYLYVNGRPVRDRSVAHAVKQAYSDV--LYQGRHPAYVLFLELDPARVDVNVHPAKHEVRFR-DARLIHDF-VYRTVQGTLAQTRAGTP 334

[Close]

BLAST of pms1 protein homolog 1 isoform c vs. SwissProt
Match: gi|1709684|sp|P54280.1|PMS1_SCHPO (RecName: Full=DNA mismatch repair protein pms1)

HSP 1 Score: 181.415 bits (459), Expect = 3.135e-46
Identity = 108/335 (32.24%), Postives = 175/335 (52.24%), Query Frame = 0

Query:   15 LPAATVARIGSGQIVTGPAAALKELLENALDAGATALQVGLLDHGLASLSVTDNGHGLAAEDLPLVARPHFTSKLRDFADLSALAFFGFRGEALHALAQTSRLTVASQIQADQDHGWQVEFDSDGQVQSRKPMAMNPGTSVICRDFFHHWPVRRNRYAQSGRKREELKKMEVLCQAFALVYPGLRLTLHHNKKA-----LLEKPSAPDLAGAIGLVLGFPTAQSMEKIEFEAESFRW-----EAFVPVAKAAWGRSTADKSFVFVNRRPVEHRSILRVLKQTFSRAADLKTDKFPICVLVLEIEPNEVDVNLDPNKYSVLLRSEAEIVQSLSTSL 339
            + A TV +I SGQ++T  A+A+KEL+EN+LD+GAT +++   ++G+ S+ V DNG G+ A D   + + HFTSK+ DF DL AL  FGFRGEAL +L    ++ +++  Q +   G Q+  D +G ++ +  +    GTSV+  D F   PVRR +  +   KRE  K + +L QA+A +    R  ++H  K       L   S  D+   I  V G   + S+           W     E ++        R++ ++  +F+NRR V    I RV+++ F   +  ++   P   + L I    +D+N+ P+K SV L  E  I++ +  SL
Sbjct:    7 IDANTVHKICSGQVITDVASAVKELVENSLDSGATTIEIRFKNYGINSIEVVDNGSGIDAGDYESIGKKHFTSKITDFEDLEALQTFGFRGEALSSLCAVGQVIISTATQNEAPKGVQLNLDHEGSLKDKLTIPFQRGTSVMVNDLFCTLPVRR-KLLEKNYKREFSKAISLL-QAYATISTNKRFMVYHQTKNSGKLLQLSTNSNKDMKLNIMNVFGTKVSSSL---------IPWNDGIIEGYISRPHVGSTRASNERQMLFINRRLVNLPKIARVIQEVFKPYSMAQS---PFFAINLRITNGTIDINVSPDKKSVFLSEEDSIIEFIKNSL 327

[Close]

BLAST of pms1 protein homolog 1 isoform c vs. SwissProt
Match: gi|75249525|sp|Q941I6.1|PMS1_ARATH (RecName: Full=DNA mismatch repair protein PMS1; AltName: Full=Postmeiotic segregation protein 1; AltName: Full=Protein POSTMEIOTIC SEGREGATION 1)

HSP 1 Score: 179.104 bits (453), Expect = 4.480e-45
Identity = 105/334 (31.44%), Postives = 172/334 (51.50%), Query Frame = 0

Query:   20 VARIGSGQIVTGPAAALKELLENALDAGATALQVGLLDHGLASLSVTDNGHGLAAEDLPLVARPHFTSKLRDFADLSALAFFGFRGEALHALAQTSRLTVASQIQADQDHGWQVEFDSDGQVQSRKPMAMNPGTSVICRDFFHHWPVRRNRYAQSGRKREELKKMEVLCQAFALVYPGLRLTLHHN-----KKALLEKPSAPDLAGAIGLVLGFPTAQSMEKIEF-EAESFRWEAFVPVAKAAWGRSTADKSFVFVNRRPVEHRSILRVLKQTFSRAADLKTDKFPICVLVLEIEPNEVDVNLDPNKYSVLLRSEAEIVQSLSTSLTVHYGPTD 347
            + RI SGQ++   ++A+KEL+EN+LDAGAT++++ L D+G     V DNG G++  +  ++A  H TSKL DF DL  L  +GFRGEAL +L     LTV ++ + ++     + FD  G + + K  A   GT+V  R  F + PVR   + ++ RK  E  K+  L  A+AL+  G+R    +      K  +L       L   I  V G  T  S++ +    +E  R E F+       GR+ AD+ + F+N RPV+   + +++ + +    D  + K+P+ +L   +     D+N+ P+K  V    E  ++ SL   L   Y  ++
Sbjct:   25 IHRICSGQVILDLSSAVKELVENSLDAGATSIEINLRDYGEDYFQVIDNGCGISPTNFKVLALKHHTSKLEDFTDLLNLTTYGFRGEALSSLCALGNLTVETRTK-NEPVATLLTFDHSGLLTAEKKTARQIGTTVTVRKLFSNLPVRSKEFKRNIRK--EYGKLVSLLNAYALIAKGVRFVCSNTTGKNPKSVVLNTQGRGSLKDNIITVFGISTFTSLQPVSICVSEDCRVEGFLSKPGQGTGRNLADRQYFFINGRPVDMPKVSKLVNELYK---DTSSRKYPVTILDFIVPGGACDLNVTPDKRKVFFSDETSVIGSLREGLNEIYSSSN 352

[Close]

BLAST of pms1 protein homolog 1 isoform c vs. SwissProt
Match: gi|20455160|sp|Q9PFB8.1|MUTL_XYLFA (RecName: Full=DNA mismatch repair protein MutL)

HSP 1 Score: 173.711 bits (439), Expect = 2.174e-44
Identity = 120/342 (35.09%), Postives = 183/342 (53.51%), Query Frame = 0

Query:   15 LPAATVARIGSGQIVTGPAAALKELLENALDAGATALQVGLLDHGLASLSVTDNGHGLAAEDLPLVARPHFTSKLRDFADLSALAFFGFRGEALHALAQTSRLTVASQIQADQDHG--WQVEFDSDGQVQSRKPMAMNPGTSVICRDFFHHWPVRRNRYAQSGRKREELKKMEVLCQAFALVYPGLRLTLHHNKK-ALLEKPSAPDLAGAIGLVLGFPTAQSMEKIEFEAESFRWEAFVPVAKAAWGRSTADKSFVFVNRRPVEHRSILRVLKQTFSRAADLKTDKFPICVLVLEIEPNEVDVNLDPNKYSVLLRSEAEIVQSLSTSLTVHYGPTDTVGGSP 353
            LP   + +I +G++V  PA+ +KEL+ENA+DAGAT + + L   G   + + DNGHG+AA++LPL    H TSK+    DL A+A  GFRGEAL ++   SR T+ S+ +A  +HG   Q+E  + G+V    P A  PGT+V  RD F++ P RR ++ ++  +R EL  +E   ++ AL +P L L L HN K +   KP        +  +LG   A    +++      R      + +  + RS  D+ +++VN R V  RS+   +KQ +S    L   + P  VL LE++P  VDVN+ P K  V  R +A ++       TV      T  G+P
Sbjct:    6 LPEILINQIAAGEVVQRPASVVKELVENAIDAGATRVDIELEAAGGRLIRIRDNGHGMAAQELPLAVLRHATSKIASLDDLEAVATLGFRGEALPSIVSVSRFTLMSR-RAMDEHGAVLQIEGGTLGEV---IPHAHAPGTTVEVRDLFYNVPARR-KFLRA--ERTELGHIEEWARSLALAHPDLELRLSHNGKLSRRYKPGDWYSDARLIEILGEDFAHQALRVDHSGAGLRLHGC--IVQPHYSRSNTDQQYLYVNGRAVRDRSVAHAVKQAYSDV--LYQGRHPAYVLFLELDPARVDVNVHPAKQEVRFR-DARLIHDF-VYRTVQGTLAQTRAGTP 334

[Close]

BLAST of pms1 protein homolog 1 isoform c vs. SwissProt
Match: gi|238058938|sp|B5YIZ6.1|MUTL_THEYD (RecName: Full=DNA mismatch repair protein MutL)

HSP 1 Score: 171.4 bits (433), Expect = 4.085e-44
Identity = 100/326 (30.67%), Postives = 177/326 (54.29%), Query Frame = 0

Query:   10 GRLSALPAATVARIGSGQIVTGPAAALKELLENALDAGATALQVGLLDHGLASLSVTDNGHGLAAEDLPLVARPHFTSKLRDFADLSALAFFGFRGEALHALAQTSRLTVASQIQADQDHGWQVEFDSDGQVQSRKPMAMNPGTSVICRDFFHHWPVRRNRYAQSGRKREELKKMEVLCQAFALVYPGLRLTLHHNKKALLEKPSAPDLAGAIGLVLGFPTAQSMEKIEFEAESFRWEAFVPVAKAAWGRSTADKSFVFVNRRPVEHRSILRVLKQTFSRAADLKTDKFPICVLVLEIEPNEVDVNLDPNKYSVLLRSEAEIVQSL 335
             R+  LP   V +I +G++V  PA+ +KEL+EN++DAGA ++ V + + G+A + V D+G G+ ++D+ L  + H TSK++D  DL  ++  GFRGEAL+++A  S+L + +Q + D+D G +V + + G + S+KP+ +  GT+V  RD F + PVRR     S  ++  + +     Q + L YP +  +L  +++ +L  P    L   I  V G    + ++      ++++ E F  +      R +  +  +FVNRRPV+  SI+  + + F        +  P   + + + P +VD N+ P K  V  R E +I+  L
Sbjct:    2 NRIKILPETIVGKISAGEVVERPASVVKELIENSIDAGANSISVYIKEFGIAEIKVIDDGEGIPSDDVILAFQRHATSKIKDEKDLQRISSLGFRGEALYSIANVSKLKIITQYK-DEDTGTEV-YLTGGNLVSQKPV-VTKGTTVEIRDLFFNTPVRRKFLKSSYTEKAHIIET---VQNYCLAYPEISFSLFIDREEVLNIPQVKTLYDRISQVFGLEFTEKLKFKTISKDNYKIELF--LGGEELLRKSKGRQLIFVNRRPVKDFSIVNTIYKAFH-----INENHPQFFIFINLPPEDVDFNVHPAKKEVRFR-EPQIIHQL 313

[Close]

BLAST of pms1 protein homolog 1 isoform c vs. SwissProt
Match: gi|25090745|sp|Q8P8E4.1|MUTL_XANCP (RecName: Full=DNA mismatch repair protein MutL >gi|81305885|sp|Q4UVP3.1|MUTL_XANC8 RecName: Full=DNA mismatch repair protein MutL >gi|229486329|sp|B0RRZ8.1|MUTL_XANCB RecName: Full=DNA mismatch repair protein MutL)

HSP 1 Score: 172.555 bits (436), Expect = 5.843e-44
Identity = 111/322 (34.47%), Postives = 178/322 (55.28%), Query Frame = 0

Query:   15 LPAATVARIGSGQIVTGPAAALKELLENALDAGATALQVGLLDHGLASLSVTDNGHGLAAEDLPLVARPHFTSKLRDFADLSALAFFGFRGEALHALAQTSRLTVASQIQADQDHGWQVEFDSDGQVQSRKPMAMNPGTSVICRDFFHHWPVRRNRYAQSGRKREELKKMEVLCQAFALVYPGLRLTLHHNKK-ALLEKPSAPDLAGAIGLVLGFPTAQSMEKIEFEAESFRWEAFVPVAKAAWGRSTADKSFVFVNRRPVEHRSILRVLKQTFSRAADLKTDKFPICVLVLEIEPNEVDVNLDPNKYSVLLRSEAEIVQSL 335
            LP   + +I +G++V  PA+ +KEL+ENALDAGAT + + L + G+  + + DNG G+A E+LPL    H TSK+    DL  +A  GFRGEAL ++A  SR T+AS+ + D +HG  ++ +  G++    P A  PGT+V  R+ F + P RR ++ ++  +R EL  +E   ++ AL  P + L + HN K +   KP        +G  LG   A+   +++      R   +  VA+  + R++ D+ +++VN R V  RS+   +K  +     L   + P  VL LE++P  VDVN+ P K+ V  R EA ++   
Sbjct:    6 LPEILINQIAAGEVVERPASVVKELVENALDAGATRVDIDLEEGGVRLIRIRDNGGGIAPEELPLAVSRHATSKIASLDDLETVATLGFRGEALPSIASVSRFTLASR-RPDAEHGSALQIEG-GRLGEVMPRAHAPGTTVEVRELFFNVPARR-KFLRA--ERTELGHIEEWLRSLALARPDVELRVSHNGKPSRRYKPGDLYSDARLGETLGEDFARQALRVDHSGAGLRLHGW--VAQPHYSRASTDQQYLYVNGRSVRDRSVAHAVKMAYGDV--LFHGRQPAYVLFLELDPARVDVNVHPAKHEVRFR-EARLIHDF 317

[Close]

BLAST of pms1 protein homolog 1 isoform c vs. SwissProt
Match: gi|81311818|sp|Q5GZ85.1|MUTL_XANOR (RecName: Full=DNA mismatch repair protein MutL >gi|123739091|sp|Q2P295.1|MUTL_XANOM RecName: Full=DNA mismatch repair protein MutL >gi|238691577|sp|B2SHP8.1|MUTL_XANOP RecName: Full=DNA mismatch repair protein MutL)

HSP 1 Score: 172.17 bits (435), Expect = 6.618e-44
Identity = 111/322 (34.47%), Postives = 177/322 (54.97%), Query Frame = 0

Query:   15 LPAATVARIGSGQIVTGPAAALKELLENALDAGATALQVGLLDHGLASLSVTDNGHGLAAEDLPLVARPHFTSKLRDFADLSALAFFGFRGEALHALAQTSRLTVASQIQADQDHGWQVEFDSDGQVQSRKPMAMNPGTSVICRDFFHHWPVRRNRYAQSGRKREELKKMEVLCQAFALVYPGLRLTLHHNKK-ALLEKPSAPDLAGAIGLVLGFPTAQSMEKIEFEAESFRWEAFVPVAKAAWGRSTADKSFVFVNRRPVEHRSILRVLKQTFSRAADLKTDKFPICVLVLEIEPNEVDVNLDPNKYSVLLRSEAEIVQSL 335
            LP   + +I +G++V  PA+ +KEL+ENALDAGAT + + L + G+  + + DNG G+A ++LPL    H TSK+    DL  +A  GFRGEAL ++A  SR T+ S+ + D +HG  +E D  G++    P A  PGT+V  R+ F + P RR ++ ++  +R EL  +E   ++ AL  P + L + HN K +   KP        +G  LG   A+   +++      R   +  VA+  + R++ D+ +++VN R V  RS+   +K  +     L   + P  VL LE++P  VDVN+ P K+ V  R EA ++   
Sbjct:    6 LPEMLINQIAAGEVVERPASVVKELVENALDAGATRVDIELEEGGVRLIRIRDNGGGIAPDELPLAVSRHATSKIASLDDLETVATLGFRGEALPSIASVSRFTLTSR-RHDAEHGSALEIDG-GRLGEVVPRAHAPGTTVEVRELFFNVPARR-KFLRA--ERTELGHIEEWLRSLALARPDVELRVSHNGKPSRRYKPGDLYSDARLGETLGEDFARQALRVDHSGAGLRLHGW--VAQPHYSRASTDQQYLYVNGRSVRDRSVAHAVKMAYGDV--LFHGRQPAYVLFLELDPARVDVNVHPAKHEVRFR-EARLIHDF 317

[Close]

BLAST of pms1 protein homolog 1 isoform c vs. nr
Match: gi|189458898|ref|NP_001121616.1| (PMS1 protein homolog 1 isoform c [Homo sapiens] >gi|1034614694|ref|XP_016859837.1| PREDICTED: PMS1 protein homolog 1 isoform X4 [Homo sapiens] >gi|58736981|dbj|BAD89399.1| PMS1 nirs variant 2 [Homo sapiens])

HSP 1 Score: 249.21 bits (635), Expect = 3.666e-67
Identity = 226/893 (25.31%), Postives = 398/893 (44.57%), Query Frame = 0

Query:   12 LSALPAATVARIGSGQIVTGPAAALKELLENALDAGATALQVGLLDHGLASLSVTDNGHGLAAEDLPLVARPHFTSKLRDFADLSALAFFGFRGEALHALAQTSRLTVASQIQADQDHGWQVEFDSDGQVQSRKPMAMNPGTSVICRDFFHHWPVRRNRYAQSGRKREELKKMEVLCQAFALVYPGLRLTLHHNKKALLEKPSAPDLAGAIGLVLGFPTAQSMEKIEFEAE--SFRWEAFVPVAKA---AWGRSTADKSFVFVNRRPVEHRSILRVLKQTFS-RAADLKTDKFPICVLVLEIEPNEVDVNLDPNKYSVLLRSEAEIVQSLSTSLTVHYGPTDTVGGSPAVDSTNLNDSN------VMNRS-----LFEKFEANPLNLDLNDQAHDSQESAAFEVEEDLTPEKSTKPPPPKRTKDGLCSWGGGPRVPSLANPAFQAQSSEQGENDQTATLQALDDDPSLLLAEVGRERDRWEPSAPLVEVKQSRPRESEEYRPGGADQTSFLTAPIEEEGDRLEPSSEQMLHQGDRTSPLVKHPPEADQHNSSLDLVQSNRLKQQTLSTWSLGRAVMDSNGDVVSPVTLGFGKPS--------SHPLAKRPKLERNGNESKPSKVSSRIGDATLGRLAAPLGTPTLDAKKRLKCVRKFKTIPISVTCLKASSQRPA--PDHPKESFRLVGKLAHGGLWIALRDEQELTLMNHHRIEEQEIHLRLLSTYALRPTESLPHPINILIHKHWDPSLEAVLAGLVCNPKTSEVEDERVLLNGLAVKVIQNQDKPVEGWL--VGVSRSVNFLGIDDLLALLKVIQDNPKADLATCRPRKVQAFLVAEAVRMIRQQPPGRDQAEAERLLELATSPKFPS---RCLHDKGHFERFFTLPTTT 872
            +  LPAATV  + S QI+T   + +KEL+EN+LDAGAT++ V L ++G   + V DNG G+ A D P++A  ++TSK+    DL  L  +GFRGEAL ++   + + + ++  AD +   Q   D  G + S+KP  +  GT+V     F + PVR+  Y+ + + ++E+KK++ L  +F ++ P LR+   HNK  + +K    D   A+  VLG     +ME  ++ +E        F+P   A       ST ++SF+F+N RPV  + IL++++  ++ +     T  +P+  L +++   +VDVNL P+K  VLL+++  ++ +L   +T  YGP       P+ +S   N ++      V++++     LF K E++  N       + + +++    + D+  ++S      K T D L          S+ +  +   SSE    D+  T  A  D   + ++ V  E  + E S     +   +  +SE    G  D        I+E G+  E                     EA   NSS          + +   WS G  + +S G+ + PV +   + S        ++P+ ++  L  +    K + + ++ G  T   L +             + ++K    P+S + L     RP    ++PK S      L    LW  L +E++L L N                          H +++L     D   +   +G      ++ + D R+  NG  +K+I       E +L   G++  + F G+ DL  +L  I +    ++  CRPRKV ++L  EAVR+ RQ P    + + + ++      +F +    C+H +  F     LP TT
Sbjct:    1 MKQLPAATVRLLSSSQIITSVVSVVKELIENSLDAGATSVDVKLENYGFDKIEVRDNGEGIKAVDAPVMAMKYYTSKINSHEDLENLTTYGFRGEALGSICCIAEVLITTRTAAD-NFSTQYVLDGSGHILSQKPSHLGQGTTVTALRLFKNLPVRKQFYSTAKKCKDEIKKIQDLLMSFGILKPDLRIVFVHNKAVIWQKSRVSDHKMALMSVLGTAVMNNMESFQYHSEESQIYLSGFLPKCDADHSFTSLSTPERSFIFINSRPVHQKDILKLIRHHYNLKCLKESTRLYPVFFLKIDVPTADVDVNLTPDKSQVLLQNKESVLIALENLMTTCYGPL------PSTNSYENNKTDVSAADIVLSKTAETDVLFNKVESSGKN-------YSNVDTSVIPFQNDMHNDES-----GKNTDDCL------NHQISIGDFGYGHCSSEISNIDKN-TKNAFQD---ISMSNVSWENSQTEYSKTCF-ISSVKHTQSEN---GNKDH-------IDESGENEE---------------------EAGLENSS----------EISADEWSRGNILKNSVGENIEPVKILVPEKSLPCKVSNNNYPIPEQMNLNEDSCNKKSNVIDNKSGKVTAYDLLSN------------RVIKK----PMSASALFVQDHRPQFLIENPKTSLE-DATLQIEELWKTLSEEEKLNLFNG------------------------SHYLDVLYKMTAD---DQRYSG------STYLSDPRLTANGFKIKLIPGV-SITENYLEIEGMANCLPFYGVADLKEILNAILNRNAKEVYECRPRKVISYLEGEAVRLSRQLPMYLSKEDIQDII-YRMKHQFGNEIKECVHGRPFFHHLTYLPETT 770

[Close]

BLAST of pms1 protein homolog 1 isoform c vs. nr
Match: gi|1034150813|ref|XP_016805675.1| (PMS1 protein homolog 1 isoform X4 [Pan troglodytes] >gi|1331753413|gb|PNI13343.1| PMS1 isoform 15 [Pan troglodytes])

HSP 1 Score: 248.44 bits (633), Expect = 7.548e-67
Identity = 225/893 (25.20%), Postives = 399/893 (44.68%), Query Frame = 0

Query:   12 LSALPAATVARIGSGQIVTGPAAALKELLENALDAGATALQVGLLDHGLASLSVTDNGHGLAAEDLPLVARPHFTSKLRDFADLSALAFFGFRGEALHALAQTSRLTVASQIQADQDHGWQVEFDSDGQVQSRKPMAMNPGTSVICRDFFHHWPVRRNRYAQSGRKREELKKMEVLCQAFALVYPGLRLTLHHNKKALLEKPSAPDLAGAIGLVLGFPTAQSMEKIEFEAE--SFRWEAFVPVAKA---AWGRSTADKSFVFVNRRPVEHRSILRVLKQTFS-RAADLKTDKFPICVLVLEIEPNEVDVNLDPNKYSVLLRSEAEIVQSLSTSLTVHYGPTDTVGGSPAVDSTNLNDSN------VMNRS-----LFEKFEANPLNLDLNDQAHDSQESAAFEVEEDLTPEKSTKPPPPKRTKDGLCSWGGGPRVPSLANPAFQAQSSEQGENDQTATLQALDDDPSLLLAEVGRERDRWEPSAPLVEVKQSRPRESEEYRPGGADQTSFLTAPIEEEGDRLEPSSEQMLHQGDRTSPLVKHPPEADQHNSSLDLVQSNRLKQQTLSTWSLGRAVMDSNGDVVSPVTLGFGKPS--------SHPLAKRPKLERNGNESKPSKVSSRIGDATLGRLAAPLGTPTLDAKKRLKCVRKFKTIPISVTCLKASSQRPA--PDHPKESFRLVGKLAHGGLWIALRDEQELTLMNHHRIEEQEIHLRLLSTYALRPTESLPHPINILIHKHWDPSLEAVLAGLVCNPKTSEVEDERVLLNGLAVKVIQNQDKPVEGWL--VGVSRSVNFLGIDDLLALLKVIQDNPKADLATCRPRKVQAFLVAEAVRMIRQQPPGRDQAEAERLLELATSPKFPS---RCLHDKGHFERFFTLPTTT 872
            +  LPAATV  + S QI+T   + +KEL+EN+LDAGAT++ V L ++G   + V DNG G+ A D P++A  ++TSK+    DL  L  +GFRGEAL ++   + + + ++  AD +   Q   D  G++ S+KP  +  GT+V     F + PVR+  Y+ + + ++E+KK++ L  ++ ++ P LR+   HNK  + +K    D   A+  VLG     +ME  ++ +E        F+P   A       ST ++SF+F+N RPV  + IL++++  ++ +     T  +P+  L +++   +VDVNL P+K  VLL+++  ++ +L   +T  YGP       P+ +S   N ++      V++++     LF K E++  N       + + +++    + D+  ++S      K T D L          S+ +  +   SSE    D+  T  A  D   + ++ V  E  + E S     +   +  +SE    G  D        I+E G+  E                     EA   NSS          + +   WS G  + +S G+ + PV +   + S        ++P+ ++  L  +    K + + ++ G  T   L +             + ++K    P+S + L     RP    ++PK S      L    LW  L +E++L L N                          H +++L     D   +   +G      ++ + D R+  NG  +K+I       E +L   G++  + F G+ DL  +L  I +    ++  CRPRKV ++L  EAVR+ RQ P    + + + ++      +F +    C+H +  F     LP TT
Sbjct:    1 MKQLPAATVRLLSSSQIITSVVSVVKELIENSLDAGATSVDVKLENYGFDKIEVRDNGEGIKAVDAPVMAMKYYTSKINSHEDLENLTTYGFRGEALGSICCVAEVLITTRTAAD-NFSTQYVLDGSGRILSQKPSHLGQGTTVTALRLFKNLPVRKQFYSTAKKCKDEIKKIQDLLMSYGILKPDLRIVFVHNKAVIWQKSRVSDHKMALMSVLGTAVMNNMESFQYHSEESQIYLSGFLPKCDADHSFTSLSTPERSFIFINSRPVHQKDILKLIRHHYNLKCLKESTRLYPVFFLKIDVPTADVDVNLTPDKSQVLLQNKESVLIALENLMTTCYGPL------PSTNSYENNKTDVSAADIVLSKTAETDVLFNKVESSGKN-------YSNVDTSIIPFQNDMHNDES-----GKNTDDCL------NHQISIGDFGYGHCSSEISNIDKN-TKNAFQD---ISMSNVSWENSQTEYSKTCF-ISSVKHTQSEN---GNKDH-------IDESGENEE---------------------EAGLENSS----------EISADEWSRGNILKNSVGENIEPVKILVPEKSLPCKVSNNNYPIPEQMNLNEDSCNKKSNVIDNKSGKVTAYDLLSN------------RVIKK----PMSASALFVQDHRPQFLIENPKTSLE-DATLQIEELWKTLSEEEKLNLFNG------------------------SHYLDVLYKMTAD---DQRYSG------STYLSDPRLTANGFKIKLIPGV-SITENYLEIEGMANCLPFYGVADLKEILNAILNRNAKEVYECRPRKVISYLEGEAVRLSRQLPMYLSKEDIQDII-YRMKHQFGNEIKECVHGRPFFHHLTYLPETT 770

[Close]

BLAST of pms1 protein homolog 1 isoform c vs. nr
Match: gi|156406466|ref|XP_001641066.1| (predicted protein [Nematostella vectensis] >gi|156228203|gb|EDO49003.1| predicted protein, partial [Nematostella vectensis])

HSP 1 Score: 235.343 bits (599), Expect = 2.515e-66
Identity = 128/337 (37.98%), Postives = 201/337 (59.64%), Query Frame = 0

Query:   12 LSALPAATVARIGSGQIVTGPAAALKELLENALDAGATALQVGLLDHGLASLSVTDNGHGLAAEDLPLVARPHFTSKLRDFADLSALAFFGFRGEALHALAQTSRLTVASQIQADQDHGWQVEFDSDGQVQSRKPMAMNPGTSVICRDFFHHWPVRRNRYAQSGRKREELKKMEVLCQAFALVYPGLRLTLHHNKKALLEKPSAPDLAGAIGLVLGFPTAQSMEKIEFEAE--SFRWEAFVPVAKA---AWGRSTADKSFVFVNRRPVEHRSILRVLKQTFSRAADLKTDKFPICVLVLEIEPNEVDVNLDPNKYSVLLRSEAEIVQSLSTSLTVHY 343
            L+ LP  TV RI S Q++T  ++A+KELLENALDAGA +++V L ++GL  + V DNG G+  +D   +A+ H+TSK+  F +L +LA +GFRGEAL +L   S ++V ++   +++ G     D  G++ + KP+ +  GT V   + F + PVR+     + + ++ELKK+E L  AF L++P +RLTL HNK  + +K    DL  A+  ++G     SME+I  + +    R E FVP   +      RS  D+SFV+VN+RPV  + I +V+++ + +     +++ P+  L +E+ P  VDVNL+PNK  VLL  +  I+  L  SL   Y
Sbjct:    4 LNLLPQDTVHRIASSQVITSVSSAVKELLENALDAGANSIEVKLEEYGLEKIEVRDNGTGIPQDDAQFMAQRHYTSKITTFHNLDSLASYGFRGEALCSLCAVSNVSVMTKTN-NEEVGMCYTLDQHGRISATKPLPLTTGTVVTACNLFKNLPVRKQFSRGNKKCKDELKKVEELIMAFGLIHPSVRLTLRHNKSIIWQKNKCEDLKKALTGIIGANAMSSMEEIIVKDDQTGLRIEGFVPKPGSDPNVTSRSMGDRSFVYVNKRPVVLKEIAQVVREFYLKIHPTISNRHPVAFLSIEVPPCAVDVNLEPNKSRVLLTEKDIIIDLLRNSLEELY 339

[Close]

BLAST of pms1 protein homolog 1 isoform c vs. nr
Match: gi|1325305800|ref|XP_023334515.1| (PMS1 protein homolog 1-like isoform X3 [Eurytemora affinis])

HSP 1 Score: 237.269 bits (604), Expect = 2.531e-63
Identity = 129/356 (36.24%), Postives = 203/356 (57.02%), Query Frame = 0

Query:   12 LSALPAATVARIGSGQIVTGPAAALKELLENALDAGATALQVGLLDHGLASLSVTDNGHGLAAEDLPLVARPHFTSKLRDFADLSALAFFGFRGEALHALAQTSRLTVASQIQADQDHGWQVEFDSDGQVQSRKPMAMNPGTSVICRDFFHHWPVRRNRYAQSGRKREELKKMEVLCQAFALVYPGLRLTLHHNKKALLEKPSAPDLAGAIGLVLGFPTAQSMEKIEFEAES--------------FRWEAFVPVAK------AAWGRSTADKSFVFVNRRPVEHRSILRVLKQTFSRAADLKTDKFPICVLVLEI---EPNEVDVNLDPNKYSVLLRSEAEIVQSLSTSLTVHYG 344
            ++ LP  TV  + SGQ+++    A+KEL+EN+LDAG+T ++V L D+GLA L V DNG G+   D+P + +PH TSK+  FA++  +  +GFRGEAL AL   S L + ++ + D        F++D  +Q     A  PGT+V   + F + PVRR+ Y    RK+EELKK+E +  AF+++ PG+R ++HHNK  +  K S   L+ + G VLG  +   M +   E +                +  +F+ + K         GR+  +K+F+F+N+RPVEH+ + +VLK+ FS AA L+T+K+P+ +L + +   E   +D NL+PNK  V L   +++   L   L   YG
Sbjct:    3 ITILPQDTVHLLKSGQVISSVYGAVKELVENSLDAGSTNVEVRLEDYGLAKLEVRDNGGGVEKADVPAMVQPHSTSKIASFAEVENVLTYGFRGEALSALCAVSTLQITTKTKTDL-VASTFSFNNDFTIQKIVSQAGKPGTTVTASNLFSNLPVRRHYYKDVHRKKEELKKVERVIAAFSIINPGVRFSIHHNKSNIFGKISCSTLSQSFGAVLGQTSRTKMNEFSLEIDPVTGQVTEQLDPDALVKLHSFIILPKKFAGMGVELGRTGPEKTFIFINKRPVEHKELEKVLKRVFSSAAGLETEKYPVSLLSITVGAEERKHMDANLEPNKQKVGLGFLSQLCSGLQEYLERMYG 357

[Close]

BLAST of pms1 protein homolog 1 isoform c vs. nr
Match: gi|1325305798|ref|XP_023334514.1| (PMS1 protein homolog 1-like isoform X2 [Eurytemora affinis])

HSP 1 Score: 236.884 bits (603), Expect = 4.638e-63
Identity = 129/356 (36.24%), Postives = 203/356 (57.02%), Query Frame = 0

Query:   12 LSALPAATVARIGSGQIVTGPAAALKELLENALDAGATALQVGLLDHGLASLSVTDNGHGLAAEDLPLVARPHFTSKLRDFADLSALAFFGFRGEALHALAQTSRLTVASQIQADQDHGWQVEFDSDGQVQSRKPMAMNPGTSVICRDFFHHWPVRRNRYAQSGRKREELKKMEVLCQAFALVYPGLRLTLHHNKKALLEKPSAPDLAGAIGLVLGFPTAQSMEKIEFEAES--------------FRWEAFVPVAK------AAWGRSTADKSFVFVNRRPVEHRSILRVLKQTFSRAADLKTDKFPICVLVLEI---EPNEVDVNLDPNKYSVLLRSEAEIVQSLSTSLTVHYG 344
            ++ LP  TV  + SGQ+++    A+KEL+EN+LDAG+T ++V L D+GLA L V DNG G+   D+P + +PH TSK+  FA++  +  +GFRGEAL AL   S L + ++ + D        F++D  +Q     A  PGT+V   + F + PVRR+ Y    RK+EELKK+E +  AF+++ PG+R ++HHNK  +  K S   L+ + G VLG  +   M +   E +                +  +F+ + K         GR+  +K+F+F+N+RPVEH+ + +VLK+ FS AA L+T+K+P+ +L + +   E   +D NL+PNK  V L   +++   L   L   YG
Sbjct:    3 ITILPQDTVHLLKSGQVISSVYGAVKELVENSLDAGSTNVEVRLEDYGLAKLEVRDNGGGVEKADVPAMVQPHSTSKIASFAEVENVLTYGFRGEALSALCAVSTLQITTKTKTDL-VASTFSFNNDFTIQKIVSQAGKPGTTVTASNLFSNLPVRRHYYKDVHRKKEELKKVERVIAAFSIINPGVRFSIHHNKSNIFGKISCSTLSQSFGAVLGQTSRTKMNEFSLEIDPVTGQVTEQLDPDALVKLHSFIILPKKFAGMGVELGRTGPEKTFIFINKRPVEHKELEKVLKRVFSSAAGLETEKYPVSLLSITVGAEERKHMDANLEPNKQKVGLGFLSQLCSGLQEYLERMYG 357

[Close]

BLAST of pms1 protein homolog 1 isoform c vs. nr
Match: gi|1236528113|gb|PAA52816.1| (hypothetical protein BOX15_Mlig006382g1, partial [Macrostomum lignano])

HSP 1 Score: 228.794 bits (582), Expect = 6.148e-63
Identity = 137/341 (40.18%), Postives = 199/341 (58.36%), Query Frame = 0

Query:   10 GRLSA-----LPAATVARIGSGQIVTGPAAALKELLENALDAGATALQVGLLDHGLASLSVTDNGHGLAAEDLPLVARPHFTSKLRDFADLSALAFFGFRGEALHALAQTSRLTVASQIQADQDHGWQVEFDSDGQVQSRKPMAMNPGTSVICRDFFHHWPVRRNRYAQSGRKREELKKMEVLCQAFALVYPGLRLTLHHNKKALLEKPSAPDLAGAIGLVLGFPTAQSMEKIEFE---AESFRWEAFVPVA---KAAWGRSTADKSFVFVNRRPVEHRSILRVLKQTFSRAADLKTDKFPICVLVLEIEPNEVDVNLDPNKYSVLLRSEAEIVQSLSTSL 339
            G++SA     LPAAT   + SGQ++ GP + +KEL+ENALDAGAT + V L   GL  L V DNG G +A D  LVA  H TSKL D + L+ L  +GFRGEAL++L    +L++A++ Q  ++ G +  FD  GQV SR+ +AM  GT V  R  FH  PVRR +   + R RE L  +E   ++ AL  PG+R  L  + +ALL  P    L   +  VL +   Q M++++ +   A   R  AFVP +   KA   R+    SF  VNRRPV+   ++++++ T S A  + T K P+CVL +E+  + +DVNL+  K  + L +EA +++S+ T L
Sbjct:    3 GQMSASQMRQLPAATARMLSSGQVILGPESVVKELIENALDAGATRVDVRLDSCGLDRLEVLDNGRGFSASDADLVAMRHCTSKLADDSGLADLVTYGFRGEALNSLCTVGQLSMATRCQG-EELGREYAFDKSGQVVSRRDVAMPTGTRVTVRQLFHCLPVRRQQLRSAKRLREALASVEAAIRSAALANPGVRFALLSDGEALLSLPECASLNDRVRQVLSYAVWQQMQRLDCQINNAVGGRVVAFVPASGADKAMLFRNGDLHSFFIVNRRPVQSAKLVKMIRSTISSAFGVPT-KLPVCVLSIELPADALDVNLNAAKTQIGLANEAAVLESIRTML 341

[Close]

BLAST of pms1 protein homolog 1 isoform c vs. nr
Match: gi|33416431|gb|AAH55651.1| (Pms1 protein [Danio rerio])

HSP 1 Score: 226.483 bits (576), Expect = 8.902e-63
Identity = 124/344 (36.05%), Postives = 204/344 (59.30%), Query Frame = 0

Query:   12 LSALPAATVARIGSGQIVTGPAAALKELLENALDAGATALQVGLLDHGLASLSVTDNGHGLAAEDLPLVARPHFTSKLRDFADLSALAFFGFRGEALHALAQTSRLTVASQIQADQDHGWQVEFDSDGQVQSRKPMAMNPGTSVICRDFFHHWPVRRNRYAQSGRKREELKKMEVLCQAFALVYPGLRLTLHHNKKALLEKPSAPDLAGAIGLVLGFPTAQSMEKIEFEAES--FRWEAFVPVAKAAWG---RSTADKSFVFVNRRPVEHRSILRVLKQTFSRA---ADLKTDKFPICVLVLEIEPNEVDVNLDPNKYSVLLRSEAEIVQSLSTSLTVHYGPTD 347
            + ALP  TV  + S Q++T     +KEL+EN+LDAG+++L+V L ++GL  + V DNG G+ A D+ ++A  H+TSK+    DL  L  +GFRGEAL ++   S + + ++  AD D   Q   D +GQ+ S+KP  +  GT+V   + F + PVRR  Y+ + + ++ELK+++ L  A+A++ P LR+TL HNK  + +K    D   A+  VLG  +  +M  I+   E      + F P   +       ST DKSF+FVN RPV H+ IL+++KQ ++ A   ++  + ++P  ++ + I  + VDVNL P+K  V+L+++ E++ S+ T L   YG ++
Sbjct:    1 MKALPPETVRLLCSSQVITSVLNVVKELIENSLDAGSSSLEVKLENYGLDRIEVRDNGSGIKATDVSVMAVKHYTSKISCHEDLEQLETYGFRGEALASICAISEVIITTK-TADDDFSIQYSVDHNGQIVSQKPSHLGQGTTVCAANLFKNLPVRRQYYSNTKKCKDELKRVQNLLMAYAVIKPELRVTLSHNKAVVWQKSRVSDHRTALMAVLGAASVANMLPIQHHQEQPEITIDGFFPKPGSDLNSTSSSTTDKSFIFVNSRPVHHKEILKLIKQYYTSAQSNSESVSRRYPTFMMNITIPASTVDVNLTPDKTEVMLQNKDEVLLSVETMLISLYGYSN 343

[Close]

BLAST of pms1 protein homolog 1 isoform c vs. nr
Match: gi|1325305796|ref|XP_023334513.1| (PMS1 protein homolog 1-like isoform X1 [Eurytemora affinis])

HSP 1 Score: 237.654 bits (605), Expect = 1.018e-62
Identity = 129/356 (36.24%), Postives = 203/356 (57.02%), Query Frame = 0

Query:   12 LSALPAATVARIGSGQIVTGPAAALKELLENALDAGATALQVGLLDHGLASLSVTDNGHGLAAEDLPLVARPHFTSKLRDFADLSALAFFGFRGEALHALAQTSRLTVASQIQADQDHGWQVEFDSDGQVQSRKPMAMNPGTSVICRDFFHHWPVRRNRYAQSGRKREELKKMEVLCQAFALVYPGLRLTLHHNKKALLEKPSAPDLAGAIGLVLGFPTAQSMEKIEFEAES--------------FRWEAFVPVAK------AAWGRSTADKSFVFVNRRPVEHRSILRVLKQTFSRAADLKTDKFPICVLVLEI---EPNEVDVNLDPNKYSVLLRSEAEIVQSLSTSLTVHYG 344
            ++ LP  TV  + SGQ+++    A+KEL+EN+LDAG+T ++V L D+GLA L V DNG G+   D+P + +PH TSK+  FA++  +  +GFRGEAL AL   S L + ++ + D        F++D  +Q     A  PGT+V   + F + PVRR+ Y    RK+EELKK+E +  AF+++ PG+R ++HHNK  +  K S   L+ + G VLG  +   M +   E +                +  +F+ + K         GR+  +K+F+F+N+RPVEH+ + +VLK+ FS AA L+T+K+P+ +L + +   E   +D NL+PNK  V L   +++   L   L   YG
Sbjct:    3 ITILPQDTVHLLKSGQVISSVYGAVKELVENSLDAGSTNVEVRLEDYGLAKLEVRDNGGGVEKADVPAMVQPHSTSKIASFAEVENVLTYGFRGEALSALCAVSTLQITTKTKTDL-VASTFSFNNDFTIQKIVSQAGKPGTTVTASNLFSNLPVRRHYYKDVHRKKEELKKVERVIAAFSIINPGVRFSIHHNKSNIFGKISCSTLSQSFGAVLGQTSRTKMNEFSLEIDPVTGQVTEQLDPDALVKLHSFIILPKKFAGMGVELGRTGPEKTFIFINKRPVEHKELEKVLKRVFSSAAGLETEKYPVSLLSITVGAEERKHMDANLEPNKQKVGLGFLSQLCSGLQEYLERMYG 357

[Close]

BLAST of pms1 protein homolog 1 isoform c vs. nr
Match: gi|961117035|ref|XP_014781131.1| (PREDICTED: PMS1 protein homolog 1-like [Octopus bimaculoides] >gi|918303444|gb|KOF76255.1| hypothetical protein OCBIM_22033559mg [Octopus bimaculoides])

HSP 1 Score: 236.113 bits (601), Expect = 1.791e-61
Identity = 129/338 (38.17%), Postives = 192/338 (56.80%), Query Frame = 0

Query:   12 LSALPAATVARIGSGQIVTGPAAALKELLENALDAGATALQVGLLDHGLASLSVTDNGHGLAAEDLPLVARPHFTSKLRDFADLSALAFFGFRGEALHALAQTSRLTVASQIQADQDHGWQVEFDSDGQVQSRKPMAMNPGTSVICRDFFHHWPVRRNRYAQSGRKREELKKMEVLCQAFALVYPGLRLTLHHNKKALLEKPSAPDLAGAIGLVLGFPTAQSMEKI--EFEAESFRWEAFVPVAKA---AWGRSTADKSFVFVNRRPVEHRSILRVLKQTFSRAADLKTDKFPICVLVLEIEPNEVDVNLDPNKYSVLLRSEAEIVQSLSTSLTVHYG 344
            L ALP+ T+  IGS Q++T  + A+KEL+EN++DAGAT +QV L ++GL  + + DNG G+ +ED P VA+ H TSK+  FADL  L  +GFRGEAL +L+  S LTV S+  ++        F   G V    P + N G+++I    F + PVR        R +EELKK+E L  AF+++ P  R TL HNK  LLEK +      A+    G+   Q  + I    E      E F+P  K+      R+ +D+  V++NRRPV  ++I +V++Q +  +     +++P+ V +  +   EVDVNL+PNK  VLL +E  I+  L++ L   YG
Sbjct:    4 LKALPSDTIRLIGSTQVITSVSNAIKELVENSIDAGATNIQVKLENYGLDRIEIRDNGCGIKSEDFPYVAKRHCTSKICLFADLEQLVTYGFRGEALASLSSVSDLTVTSRTMSN-SLAQTATFSKSGDVLKITPCSSNEGSTIIASGLFRNLPVRHQFNKNDKRCKEELKKVENLITAFSIINPATRFTLRHNKDILLEKGAVDSYRSALIATWGWSLVQQFQHIVKTDEEHQISLEMFLPQTKSEVNVMSRTGSDQGLVYINRRPVRFKAIQKVVRQYYCNSLVGDKNRYPLFVAIFTVPNREVDVNLEPNKARVLLHNEETILDILTSLLEELYG 340

HSP 2 Score: 78.9518 bits (193), Expect = 3.601e-11
Identity = 70/238 (29.41%), Postives = 107/238 (44.96%), Query Frame = 0

Query:  642 KFKTIPISVTCLKASSQRPAPD-HPKESFRLVGKLAHGGLWIALRDEQELTLMNHHRIEEQEIHLRLLSTYALRPTESLPHPINILIHKHWDPSLEAVLAGLVCN------PKTSEVEDERVLLNGLAVKVIQNQDKPVEG---WLVGVSRSVNFLGIDDLLALLKVIQDNPKAD-LATCRPRKVQAFLVAEAVRMIRQQPPGRDQAEAERLLELATSPKFPSRCLHDKGHFERFFTL 868
            K+  IP S+  LK        +    + +  VG L     WI  +    L L+N HRI E  I+ RLL ++  + TESL  P++I      D  L   L  L         P   ++ D R++ NG  + + + Q    E     L  V+ S+   G+ DL  +L+ I   P++  L   RP K+  +L  EAVRM R+ P    + E   LLE +   K  S CLH +  F++ + +
Sbjct:  709 KYHNIPFSLKTLKRKLLNICNESQSSDDYVPVGILPQSDNWICQQGTHIL-LLNPHRINEVVIYRRLLESFQFQ-TESLETPVDINERLLGDVKLWRTLLALETEQEKEMLPGFRKITDHRIIANGFHIVIFREQGSSPEVKQVQLRAVADSIPTYGVGDLCEVLENIASLPESSSLTQSRPLKILNYLKGEAVRMTRKSPLFSCREEITELLESSKRLK-TSECLHSRPFFQKLYDI 943

[Close]

BLAST of pms1 protein homolog 1 isoform c vs. nr
Match: gi|1020488680|ref|XP_016150045.1| (PREDICTED: PMS1 protein homolog 1-like isoform X2 [Sinocyclocheilus grahami])

HSP 1 Score: 231.876 bits (590), Expect = 3.777e-61
Identity = 129/366 (35.25%), Postives = 209/366 (57.10%), Query Frame = 0

Query:    9 EGRLSALPAATVARIGSGQIVTGPAAALKELLENALDAGATALQVGLLDHGLASLSVTDNGHGLAAEDLPLVARPHFTSKLRDFADLSALAFFGFRGEALHALAQTSRLTVASQIQADQDHGWQVEFDSDGQVQSRKPMAMNPGTSVICRDFFHHWPVRRNRYAQSGRKREELKKMEVLCQAFALVYPGLRLTLHHNKKALLEKPSAPDLAGAIGLVLGFPTAQSMEKIEFEAES--FRWEAFVPVAKAAWG---RSTADKSFVFVNRRPVEHRSILRVLKQTFSRAADLKTD---KFPICVLVLEIEPNEVDVNLDPNKYSVLLRSEAEIVQSLSTSLTVHYGPT------DTVGGSPAVDSTNL 360
            E  + ALP  TV  + S Q++T     +KEL EN+LDAG+++L+V L ++GL  + V DNG G+ A D+P++A  H+TSK+    DL  L  +GFRGEAL ++   S + + ++  AD D   Q   D +GQ+ S+KP  +  GT+V   + F + PVRR  Y+ + + +EELK+++ L  A+A+V P LR+TL HNK  + +K    D   A+  VLG  +  +M  ++   E      + F P   + +     ST DK+F+FVN RPV H+ IL+++KQ ++ A   K     ++P  ++ + I  + VD+NL P+K  V+L+++  ++ ++ T L   YG +       T G  P V S ++
Sbjct:    2 EHTMKALPPETVRLLCSSQVITSVLNVVKELAENSLDAGSSSLEVKLENYGLDRIEVRDNGSGIKATDVPVMAVKHYTSKISCHEDLQRLETYGFRGEALASICAISEVVITTKT-ADDDFSIQYSVDHNGQIVSQKPSHLGEGTTVCAANLFKNLPVRRQYYSNTKKCKEELKRVQNLLMAYAVVKPELRITLSHNKAVVWQKSRVSDHRTALMAVLGAASVANMLPVQHHQEQPEIGIDGFFPKPGSDFNSTSSSTPDKTFIFVNSRPVHHKEILKLIKQYYTSAQSNKESANRRYPFLMMNITIPASTVDINLTPDKTEVMLQNKEGVLLAVETLLISLYGYSIDNDDLKTGGNCPGVSSVDV 366

The following BLAST results are available for this feature:

BLAST of pms1 protein homolog 1 isoform c vs. L. salmonis genes
BLAST of pms1 protein homolog 1 isoform c vs. SwissProt
BLAST of pms1 protein homolog 1 isoform c vs. nr

BLAST of pms1 protein homolog 1 isoform c vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 3


Match Name	E-value	Identity	Description
EMLSAG00000011848	8.858e-40	31.21	supercontig:LSalAtl2s:LSalAtl2s831:305553:309700:1...	[more]
EMLSAG00000001195	1.013e-25	25.53	supercontig:LSalAtl2s:LSalAtl2s119:448074:452320:1...	[more]
EMLSAG00000011595	7.643e-17	27.42	supercontig:LSalAtl2s:LSalAtl2s800:379462:382291:1...	[more]

BLAST of pms1 protein homolog 1 isoform c vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|1709683\|sp\|P54277.1\|PMS1_HUMAN	3.579e-58	32.78	RecName: Full=PMS1 protein homolog 1; AltName: Ful...	[more]
gi\|1064303045\|sp\|F1NQJ3.3\|PMS2_CHICK	7.196e-47	30.66	RecName: Full=Mismatch repair endonuclease PMS2; A...	[more]
gi\|32129762\|sp\|Q87AC9.1\|MUTL_XYLFT	8.575e-47	35.57	RecName: Full=DNA mismatch repair protein MutL >gi...	[more]
gi\|238687954\|sp\|B0U5C6.1\|MUTL_XYLFM	2.077e-46	35.38	RecName: Full=DNA mismatch repair protein MutL	[more]
gi\|1709684\|sp\|P54280.1\|PMS1_SCHPO	3.135e-46	32.24	RecName: Full=DNA mismatch repair protein pms1	[more]
gi\|75249525\|sp\|Q941I6.1\|PMS1_ARATH	4.480e-45	31.44	RecName: Full=DNA mismatch repair protein PMS1; Al...	[more]
gi\|20455160\|sp\|Q9PFB8.1\|MUTL_XYLFA	2.174e-44	35.09	RecName: Full=DNA mismatch repair protein MutL	[more]
gi\|238058938\|sp\|B5YIZ6.1\|MUTL_THEYD	4.085e-44	30.67	RecName: Full=DNA mismatch repair protein MutL	[more]
gi\|25090745\|sp\|Q8P8E4.1\|MUTL_XANCP	5.843e-44	34.47	RecName: Full=DNA mismatch repair protein MutL >gi...	[more]
gi\|81311818\|sp\|Q5GZ85.1\|MUTL_XANOR	6.618e-44	34.47	RecName: Full=DNA mismatch repair protein MutL >gi...	[more]

Pages

BLAST of pms1 protein homolog 1 isoform c vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|189458898\|ref\|NP_001121616.1\|	3.666e-67	25.31	PMS1 protein homolog 1 isoform c [Homo sapiens] >g...	[more]
gi\|1034150813\|ref\|XP_016805675.1\|	7.548e-67	25.20	PMS1 protein homolog 1 isoform X4 [Pan troglodytes...	[more]
gi\|156406466\|ref\|XP_001641066.1\|	2.515e-66	37.98	predicted protein [Nematostella vectensis] >gi\|156...	[more]
gi\|1325305800\|ref\|XP_023334515.1\|	2.531e-63	36.24	PMS1 protein homolog 1-like isoform X3 [Eurytemora...	[more]
gi\|1325305798\|ref\|XP_023334514.1\|	4.638e-63	36.24	PMS1 protein homolog 1-like isoform X2 [Eurytemora...	[more]
gi\|1236528113\|gb\|PAA52816.1\|	6.148e-63	40.18	hypothetical protein BOX15_Mlig006382g1, partial [...	[more]
gi\|33416431\|gb\|AAH55651.1\|	8.902e-63	36.05	Pms1 protein [Danio rerio]	[more]
gi\|1325305796\|ref\|XP_023334513.1\|	1.018e-62	36.24	PMS1 protein homolog 1-like isoform X1 [Eurytemora...	[more]
gi\|961117035\|ref\|XP_014781131.1\|	1.791e-61	38.17	PREDICTED: PMS1 protein homolog 1-like [Octopus bi...	[more]
gi\|1020488680\|ref\|XP_016150045.1\|	3.777e-61	35.25	PREDICTED: PMS1 protein homolog 1-like isoform X2 ...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold470_size172058	supercontig	scaffold470_size172058:140475..145047 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
maker	2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides	2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt	2018-04-19
T. kingsejongensis proteins Blastp vs. NR	2018-05-15

Properties


Property Name	Value
Note	F:binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
maker-scaffold470_size172058-snap-gene-0.39-mRNA-1	maker-scaffold470_size172058-snap-gene-0.39-mRNA-1	Tigriopus kingsejongensis	mRNA

Sequences

The following sequences are available for this feature:

gene from alignment at scaffold470_size172058:140475..145047-

gene from alignment at scaffold470_size172058:140475..145047-

Legend: mRNA

Hold the cursor over a type above to highlight its positions in the sequence below.

>maker-scaffold470_size172058-snap-gene-0.39 ID=maker-scaffold470_size172058-snap-gene-0.39|Name=pms1 protein homolog 1 isoform c|organism=Tigriopus kingsejongensis|type=gene|length=4573bp|location=Sequence derived from alignment at scaffold470_size172058:140475..145047- (Tigriopus kingsejongensis)
GGACACAGGCGGGATTTGCCTCACTGGATGGTTGGTCATTGTAGTCAGTA
CCCAAATAAGACCCGCGAGTGCCGAATCCTGATGGCTCAGCGGACTTGAA
TCACACCATGCCCGGGGCAGAAGGCCGACTGTCAGCCTTGCCAGCCGCCA
CCGTGGCCCGCATTGGCTCGGGTCAGATCGTGACGGGTCCGGCGGCCGCT
CTGAAGGAGCTGCTGGAGAACGCCTTGGACGCGGGCGCCACTGCGCTCCA
AGTGGGCTTGCTCGACCACGGGCTGGCCTCCTTGTCCGTGACCGACAACG
GGCACGGGCTGGCGGCCGAGGACCTGCCGCTCGTGGCTCGCCCGCACTTC
ACCTCCAAGCTTCGGGACTTTGCCGATCTGAGCGCACTCGCCTTCTTCGG
GTTCCGCGGTGAAGCTCTGCACGCCTTGGCTCAGACTTCCCGCTTGACGG
TGGCCTCGCAAATCCAGGCGGGTGAGTGCCTGAAAAGGGATTGTTCCCTT
TTTTAAAGTAGCTATATGATCCAGTATATAATGGCGGAATAAAGATATGA
GATCCAACACGGAATGATTTACACATGGACAAGGATCAAAGTGTATCAGC
CAGGGGTATAGCTCCAACCTTAAGTACGCCAAGGAGCTCTACATAAGAAC
TAGATGGAGCGGAAGCTTCAGGAATATGCGTTCTAAGGCAGAGATGCGCG
GCCAATTCTGCTCAATCAGCCGAAGTAGGTCTAGCCGCCAATGCGTTCCA
GGGGCTCTCAAACTTGGATCGAGCCAGGCATATTTGGCCATGCCTCGGAA
CGCATATTCTTGAAGTCACGTGACCTTTTCAGGAAGCTTCCGTTCCATCT
ACACTATCTGTAGTGCTTATGTAGAGCTCCTTTGTGAGAGAATTGGCCTT
TGGCTCTGCCTCAGAACGCATATTCGGGGGGCGAATGGGTGTAGTGGTCA
AGACACTTTCCTGGAGTGAGGATTGGCCTCGGTTCAAGCCGCCCCCCTCC
TCCACCTTCCAACACCATCACGTCAACATGGGAATGCGTCAGATCTTGAC
CAGCCACCTCTTTAATGTATTACGTCTATTGTGAAAACATACATAATTGT
ATATCGCTAGTCGTGGGGGTCAAAATCCGAAATACAATACATATTCTTGA
AGTCACGTGACATTTGCAGGAAGCTTCCGCTCCATCTAGTTCTTAAGTAG
AGCTCCTTGGATAAGCCATGCAGCTTGCTTTCACAGATGGCCAGATCAGA
AGAATGCAAAATTGGAGATCGAACTCAATATTGCACGAAAATTACTGCCA
AACCTAACTCGAGAACGAGGCACAGTCAAGAAATACACCGAGTTTAACAT
TCGATTAAGGCAATATCTCATGACAGAAAGGACTTGTATCCTAAAAAGAG
ATATCATTCAGCGAAATCAATTGTTTTTGGGCAATCCCAACACAATCAGG
GCTCTGCGACGACATGGCAGGACAACAGAGAGGTAGTTGACTTAATGATT
CTCAGACGTAGTTTGAGTTATTTCATTCGTAGGCTACATACAGTACTGTA
TACGTATTCTAATCGAGACGGATTATTCGGCAAAAGTTTCTGGCACGCGC
GCCACCATTCAAGCTTTTGAGGTCGTGGGGATGTAAGCAATTCGGGTCTA
TGTACTGCTATGGAGTAGCCTTTCAGGGGGTGGCCAGCGACCCCCTGACC
AGGCATTGGGACGTAACAACCCGAAGATTCAGCAACTTTGTATACAGAGC
TGTGTATTTCGGGCCTCACCCAGGACTTGGAAGTTGCTCCGTGAGCATTC
CGCTCAGCTCTAACTTTCTGCCTTGAACAATCCCTTGGGTGTGGTTGAAT
TATTTCAATTTGACGAGGTTTTCGTGGTCAGAGGTGGATCGAATGTTGGA
TTGCGTTGGAGTTGGTTAAGACATAGTATACTAGAATGATCGACGGACTA
CTACGTTTAAGAGATCCAGAGCCCACGCTCATGTGCTCCTTTTTCTATTT
CTAGACCAAGATCACGGGTGGCAGGTCGAGTTCGATTCGGACGGCCAAGT
TCAGAGCCGGAAACCCATGGCCATGAATCCCGGTACAAGTGTGATTTGTC
GGGATTTCTTCCACCATTGGCCCGTGCGCCGGAATCGCTACGCTCAGAGT
GGAAGAAAGCGAGAGGAGCTCAAGAAAATGGAGGTCTTGTGTCAAGCCTT
CGCTCTGGTCTACCCTGGTCTCCGCCTCACTCTGCATCACAACAAGAAGG
CACTGCTGGAAAAGCCCTCGGCGCCTGATCTGGCGGGTGCCATCGGATTG
GTCCTGGGCTTCCCCACGGCCCAGTCGATGGAGAAAATCGAGTTCGAGGC
CGAATCCTTCCGTTGGGAAGCCTTTGTGCCCGTAGCGAAGGCGGCTTGGG
GCCGCTCCACGGCAGATAAGAGTTTCGTTTTCGTCAACCGCCGACCCGTG
GAGCACCGATCCATTCTCCGCGTCCTCAAGCAAACCTTCAGCCGGGCCGC
GGACTTGAAGACGGACAAATTTCCCATTTGTGTCCTGGTCCTCGAGATCG
AGCCCAACGAGGTGGACGTCAACCTTGATCCCAACAAATACTCGGTGCTG
CTCAGATCCGAGGCCGAAATTGTCCAGTCCTTGAGCACCAGTTTGACCGT
GCATTATGGACCCACAGACACAGTTGGGGGCTCTCCGGCTGTGGACTCGA
CCAATCTCAACGACTCGAATGTGATGAACCGGAGCCTTTTCGAGAAATTC
GAGGCCAATCCGCTGAATTTGGACCTCAACGATCAGGCTCACGATTCTCA
GGAGTCTGCAGCCTTTGAAGTCGAAGAAGATCTCACCCCCGAAAAGAGCA
CCAAACCGCCTCCTCCCAAGCGCACCAAGGATGGCCTGTGCTCCTGGGGG
GGAGGTCCCCGCGTTCCAAGTTTGGCAAACCCGGCCTTTCAGGCTCAAAG
CTCGGAACAAGGGGAGAATGACCAGACTGCGACTCTTCAGGCCTTGGATG
ATGATCCCTCTTTGCTCCTCGCTGAAGTGGGGAGGGAAAGGGATCGGTGG
GAACCCAGTGCTCCACTTGTGGAAGTTAAACAGTCTCGTCCCCGCGAATC
AGAAGAGTATAGGCCAGGTGGGGCTGACCAAACCTCATTTCTCACCGCCC
CAATAGAGGAGGAAGGGGATCGATTGGAGCCCAGTTCTGAGCAAATGCTG
CATCAGGGCGACAGAACATCTCCTTTGGTCAAGCACCCTCCTGAGGCAGA
TCAGCACAACTCATCCTTGGATCTCGTGCAGAGCAATCGTCTCAAGCAAC
AGACTCTGAGCACCTGGAGCCTGGGCCGGGCTGTGATGGACAGCAATGGC
GATGTGGTCAGTCCGGTCACTCTTGGGTTTGGAAAACCTAGTTCACATCC
GTTGGCGAAACGCCCAAAGCTGGAGAGGAATGGAAACGAGAGCAAGCCGT
CCAAAGTGTCTTCGAGAATAGGGGACGCCACATTGGGTCGTTTGGCCGCG
CCCTTGGGCACTCCCACCTTGGATGCCAAGAAACGGCTGAAATGCGTTCG
AAAGTTCAAAACTATTCCAATCTCAGTGACTTGTTTGAAGGCCTCATCGC
AGAGACCTGCTCCAGATCACCCCAAAGAGTCGTTTCGGTTAGTGGGCAAG
TTGGCCCATGGCGGCCTCTGGATTGCTCTCAGGGATGAACAAGAGCTTAC
GCTCATGAATCACCATCGGATTGAGGAGCAAGAAATCCACCTGCGACTTC
TCTCCACCTATGCCCTAAGGCCGACTGAAAGTCTGCCTCATCCCATCAAC
ATTTTGATCCACAAACATTGGGATCCCTCGCTCGAGGCCGTCCTGGCTGG
ATTGGTATGTAACCCAAAGACCTCGGAGGTTGAAGACGAGCGAGTGCTGC
TCAACGGTCTCGCCGTGAAAGTCATCCAAAACCAGGACAAGCCAGTGGAG
GGATGGCTGGTTGGTGTCTCCCGGTCCGTCAATTTCCTGGGTATCGACGA
TCTTTTGGCCTTGCTGAAGGTCATTCAGGACAATCCAAAGGCCGACCTGG
CCACCTGCCGTCCTCGAAAAGTTCAGGCCTTCTTGGTGGCCGAGGCTGTC
CGGATGATTCGGCAGCAGCCTCCAGGCCGGGATCAGGCCGAGGCTGAACG
ACTCCTGGAGCTTGCCACGAGTCCCAAGTTTCCGAGTCGATGTCTCCATG
ACAAAGGCCATTTTGAGCGCTTCTTCACCCTGCCAACCACTACATCACGA
ATAGCAATGAATTGAAATTGGAAGAAAATGATTCTCGGAAGAACACTATT
TTATACCACTCTCCATCATCATTCACAATTCAACGTGAAATAAGAGTTCC
GGAGGAGGAGGGCACGAATTGTCGGTCCTTGAGCACTTTTCTGAGGGATG
ACATTCGATTTGTCAGGATGGGACGACGGCGAATTGGATGCCAATTGGGT
TTTTGTATTTCATCTCTGCACTATTCTGGTGTTGGGGTTTTGCATGCTCT
CCAGGACTACTAGCCAACCAAATTGCGAATCAACATTCCACCTTTTTGGA
ATAACAGAGAGACAACAGACGGG

Synonyms

The feature 'pms1 protein homolog 1 isoform c' has the following synonyms


Synonym
Tk09902

Add to Basket

Pages

Pages

Search form