nuclear receptor, snap_masked-scaffold148_size310697-processed-gene-0.3 (gene) Tigriopus kingsejongensis

Overview


Name	nuclear receptor
Unique Name	snap_masked-scaffold148_size310697-processed-gene-0.3
Type	gene
Organism	Tigriopus kingsejongensis (Tigriopus kingsejongensis)

Associated RNAi Experiments

Nothing found

Homology

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BLAST of nuclear receptor vs. L. salmonis genes
Match: EMLSAG00000010267 (supercontig:LSalAtl2s:LSalAtl2s680:110406:112508:1 gene:EMLSAG00000010267 transcript:EMLSAT00000010267 description:"maker-LSalAtl2s680-augustus-gene-1.19")

HSP 1 Score: 124.02 bits (310), Expect = 1.659e-30
Identity = 108/408 (26.47%), Postives = 175/408 (42.89%), Query Frame = 0

Query:  247 CPICGNPAGKHSYYGAQVCSSCRAFFRRSIQKSAHEEFICRS-GQSCRIDSKSWKSCKFCRFQSCLAVGMNPQWVMNQEERGNRNAKRNYLQNLRQKQPMMGAQSRTVLSKPRIDIVV--------RWTSDEECQIRGLKDLFSDYATKVIANFHSENPRMLQ-------QFVDNLNKGTSINLKEYVFADHFIRSQV----VNFYDNLSDFQEIPVSDRRQLFAFNFPLNAHLMEALVYHHPKESRRNIQDFMTRLQTFTDQDESLEEVNQMMSTVILDDNVQDKIDRLHDTHIYSEDSKQKRVELSNAIQQWPKTSPNGLADEVLTTLLGLIII-------LSPDFLNLKDATRVSQAQTKYSVMLHRYLKAKLPTKAHAKFGQGI---ELISKLRELTTIL--CT 622
            C ICG  AGKH YYG Q C+SCRAFFRRS+Q +++++FIC S  + C I+ K+ K+C+ CRFQ C++ GM   WV    ER ++ +      N   K P+        L+   + IV          +  +    ++   D   D+   +     SE P +         Q +  ++ GTS +   +   D ++  Q+    +N +  LS  +  P          NFP    L+ ++   H   +   IQ+  +R++ FT Q   L                       HD      D+    + L + I  W     N +  +  + ++ L I+       +    +  KD   + +AQ  Y  ML RY + K P K+  KF +GI    LI+++R+L+  L  CT
Sbjct:  107 CQICGEVAGKHVYYGGQCCTSCRAFFRRSVQNNSYKQFICCSQTKDCIINLKTRKACQLCRFQKCVSAGMRVSWVFPDRERRSKKSAMTLNNN---KPPLPSFNDPEGLTSIEVSIVFTINNNLHKNFLDNLNTMVKRDSDFLIDFVDYLAFPTRSEYPYLKMAMSLEKIQLLSLISMGTSNSSLHFSQEDLYVLYQINSPKINIFRELSSIKN-P----------NFPDIDELINSVRLLHLNNNE-TIQNLPSRVE-FTLQHYLLN----------------------HDLCPNENDNYSTFLHLVSQINSWVMDDENVIKQDKFSYIIMLFILFFDRTDSVKISGVKFKDPEMIDRAQLAYVQMLKRYFQRKYPRKSSKKFLKGIMLPSLIAEVRQLSNQLHFCT 476

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BLAST of nuclear receptor vs. L. salmonis genes
Match: EMLSAG00000011907 (supercontig:LSalAtl2s:LSalAtl2s83:639505:641027:-1 gene:EMLSAG00000011907 transcript:EMLSAT00000011907 description:"maker-LSalAtl2s83-augustus-gene-6.22")

HSP 1 Score: 103.99 bits (258), Expect = 7.827e-24
Identity = 42/86 (48.84%), Postives = 60/86 (69.77%), Query Frame = 0

Query:  247 CPICGNPAGKHSYYGAQVCSSCRAFFRRSIQKSAHEEFICRSG-QSCRIDSKSWKSCKFCRFQSCLAVGMNPQWVMNQEERGNRNA 331
            C ICG  AGKH YYG Q C+SCRAFFRRS+Q +++++F C S  + C I+ ++ KSC+ CRFQ C++ GM   WV+   ER ++ +
Sbjct:  106 CQICGEVAGKHVYYGGQCCTSCRAFFRRSVQNNSYKQFSCCSKTEDCIINLQTRKSCQLCRFQKCISAGMRASWVLPDGERRSKKS 191

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BLAST of nuclear receptor vs. L. salmonis genes
Match: EMLSAG00000012651 (supercontig:LSalAtl2s:LSalAtl2s959:3535:5114:-1 gene:EMLSAG00000012651 transcript:EMLSAT00000012651 description:"maker-LSalAtl2s959-snap-gene-0.24")

HSP 1 Score: 99.7525 bits (247), Expect = 1.969e-22
Identity = 39/85 (45.88%), Postives = 56/85 (65.88%), Query Frame = 0

Query:  246 TCPICGNPAGKHSYYGAQVCSSCRAFFRRSIQKSAHEEFICRSGQSCRIDSKSWKSCKFCRFQSCLAVGMNPQWVMNQEERGNRN 330
             C +CG+ A  H +YG   C SCRAFFRRS+ K  H  + C + Q+C I   + K+C+FCR++ CL  GM P WV+++EE+ +RN
Sbjct:   90 VCNVCGDKAPDHIHYGGIACFSCRAFFRRSVPK--HTTYFCSTDQACMITITTRKNCQFCRYKKCLESGMKPSWVLSEEEKSSRN 172

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BLAST of nuclear receptor vs. L. salmonis genes
Match: EMLSAG00000008902 (supercontig:LSalAtl2s:LSalAtl2s554:572309:581835:1 gene:EMLSAG00000008902 transcript:EMLSAT00000008902 description:"maker-LSalAtl2s554-snap-gene-5.6")

HSP 1 Score: 86.2705 bits (212), Expect = 5.517e-18
Identity = 54/155 (34.84%), Postives = 75/155 (48.39%), Query Frame = 0

Query:  210 PKLGTPETSSRSRSPSESISNSYSETSASPSSDPSYT------CPICGNPAGKHSYYGAQVCSSCRAFFRRSIQKSAHEEFICRSGQSCRIDSKSWKSCKFCRFQSCLAVGMNPQWVMNQEERGNRNA-----KRN---YLQNLRQKQPMMGAQS 350
            P  G P  SS + S + S S  +       S  P         CP+CG+    + +YG   C SC+ FF+R++Q    + + C + +SC ID    K C +CRFQ CL VGM  + V +   RG RN      KR+    LQ LRQ+Q + G  S
Sbjct:  144 PSAGLPTASSNNNS-AGSTSGDFGPGVVGQSDQPDSKDGMEELCPVCGDKVSGY-HYGLLTCESCKGFFKRTVQNK--KVYTCVADRSCVIDKTQRKRCPYCRFQKCLDVGMKLEAVRHDRMRGGRNKFGPMYKRDRARKLQVLRQRQVIHGGVS 294

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BLAST of nuclear receptor vs. L. salmonis genes
Match: EMLSAG00000004174 (supercontig:LSalAtl2s:LSalAtl2s220:369739:371271:-1 gene:EMLSAG00000004174 transcript:EMLSAT00000004174 description:"augustus_masked-LSalAtl2s220-processed-gene-3.5")

HSP 1 Score: 85.8853 bits (211), Expect = 7.518e-18
Identity = 37/86 (43.02%), Postives = 48/86 (55.81%), Query Frame = 0

Query:  246 TCPICGNPAGKHSYYGAQVCSSCRAFFRRSIQKSAHEEFICRSGQ-----SCRIDSKSWKSCKFCRFQSCLAVGMNPQWVMNQEER 326
             C ICG+ A  H++YGA  C SCRAFF R++ K   E F C  G       C I   +   C+FCR++ CL+ GM P +V   EER
Sbjct:  136 VCRICGDIAPPHNHYGAIACFSCRAFFGRTVHKGTQERFRCVRGNPDESGQCMITKATRTHCQFCRYRGCLSAGMXPSYVTTAEER 221

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BLAST of nuclear receptor vs. L. salmonis genes
Match: EMLSAG00000008261 (supercontig:LSalAtl2s:LSalAtl2s49:858199:860758:1 gene:EMLSAG00000008261 transcript:EMLSAT00000008261 description:"maker-LSalAtl2s49-augustus-gene-8.3")

HSP 1 Score: 84.7297 bits (208), Expect = 1.565e-17
Identity = 36/76 (47.37%), Postives = 47/76 (61.84%), Query Frame = 0

Query:  246 TCPICGNPAGKHSYYGAQVCSSCRAFFRRSIQKSAHEEFICRSGQSCRIDSKSWKSCKFCRFQSCLAVGMNPQWVM 321
            TC IC + A  H +YGA  C SCRAFFRR++  +A  E+ C   ++C I  ++ K C+FCRF  CL  GM   WVM
Sbjct:   62 TCHICSDTANDHIHYGAIACXSCRAFFRRAVICNA--EYHCSRDKTCFITKETRKHCQFCRFNKCLEAGMKNTWVM 135

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BLAST of nuclear receptor vs. L. salmonis genes
Match: EMLSAG00000013004 (supercontig:LSalAtl2s:LSalAtl2s98:942409:953748:1 gene:EMLSAG00000013004 transcript:EMLSAT00000013004 description:"augustus_masked-LSalAtl2s98-processed-gene-9.1")

HSP 1 Score: 81.2629 bits (199), Expect = 3.052e-16
Identity = 35/88 (39.77%), Postives = 54/88 (61.36%), Query Frame = 0

Query:  244 SYTCPICG-NPAGKHSYYGAQVCSSCRAFFRRSIQKSAHEEFICRSGQSCRIDSKSWKSCKFCRFQSCLAVGMNPQWVMNQEERGNRN 330
            S  C +CG N A +H  YG + C  C+ FF+R++QK+A  +++C + ++C +D +    C+FCRFQ CLAVGM  + V     +G R 
Sbjct:  406 SLLCAVCGDNAACQH--YGVRTCEGCKGFFKRTVQKNA--KYVCLADKNCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRG 489

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BLAST of nuclear receptor vs. L. salmonis genes
Match: EMLSAG00000001919 (supercontig:LSalAtl2s:LSalAtl2s132:616435:622808:1 gene:EMLSAG00000001919 transcript:EMLSAT00000001919 description:"augustus_masked-LSalAtl2s132-processed-gene-6.5")

HSP 1 Score: 76.2554 bits (186), Expect = 6.370e-15
Identity = 38/114 (33.33%), Postives = 56/114 (49.12%), Query Frame = 0

Query:  215 PETSSRSRSPSESISNSYSETSASPSSDPSYTCPICGNPA-GKHSYYGAQVCSSCRAFFRRSIQKSAHEEFICRSGQSCRIDSKSWKSCKFCRFQSCLAVGMNPQWVMNQEERG 327
            P     +RS     +N+Y      P S   + C ICG+ A GKH  YG   C  C+ FF+R+++K     + CR  + C ID +    C++CR+  CL  GM  + V  +  RG
Sbjct:   61 PGVHGHARSTQSPPNNTYPPNH--PLSGSKHFCSICGDRASGKH--YGVYSCEGCKGFFKRTVRKEL--TYACRENRDCVIDKRQRNRCQYCRYMKCLDTGMKREAVQEERHRG 168

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BLAST of nuclear receptor vs. L. salmonis genes
Match: EMLSAG00000007361 (supercontig:LSalAtl2s:LSalAtl2s418:374353:376789:1 gene:EMLSAG00000007361 transcript:EMLSAT00000007361 description:"maker-LSalAtl2s418-augustus-gene-3.13")

HSP 1 Score: 73.559 bits (179), Expect = 6.315e-14
Identity = 30/81 (37.04%), Postives = 47/81 (58.02%), Query Frame = 0

Query:  247 CPICGNPA-GKHSYYGAQVCSSCRAFFRRSIQKSAHEEFICRSGQSCRIDSKSWKSCKFCRFQSCLAVGMNPQWVMNQEER 326
            C +CG+ A GKH  YGA  C  C+ FFRRS++K     + CR  ++C ++     +C++CR + C+  GM    V N+ +R
Sbjct:  151 CAVCGDRATGKH--YGAASCDGCKGFFRRSVRKE--RVYGCRQNRACIVNKDKRNNCRYCRLKMCIKAGMKKSAVQNERDR 227

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BLAST of nuclear receptor vs. L. salmonis genes
Match: EMLSAG00000008071 (supercontig:LSalAtl2s:LSalAtl2s47:304551:317770:1 gene:EMLSAG00000008071 transcript:EMLSAT00000008071 description:"snap_masked-LSalAtl2s47-processed-gene-3.10")

HSP 1 Score: 72.0182 bits (175), Expect = 1.938e-13
Identity = 35/99 (35.35%), Postives = 54/99 (54.55%), Query Frame = 0

Query:  246 TCPICGNPAGKHSYYGAQVCSSCRAFFRRSIQKSAHEEFICRSGQSCRIDSKSWKSCKFCRFQSCLAVGMNPQWVMNQEERGNRNAKRNYLQNLRQKQP 344
            TC +CG+ A    +YG   C +C+AFF+R+IQ   + E+   +   C I+ +  K+C+ CRFQ CL +GM  + V     RG R   R  +++    QP
Sbjct:  270 TCLVCGDIASGF-HYGVSSCEACKAFFKRTIQ--GNIEYTXPASNECEINKRRRKACQACRFQKCLRMGMLKEGVRLDRVRGGRQKYRRMIESSPYIQP 365

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BLAST of nuclear receptor vs. SwissProt
Match: gi|122142352|sp|Q0V8F0.1|NR4A1_BOVIN (RecName: Full=Nuclear receptor subfamily 4 group A member 1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.748e-17
Identity = 76/316 (24.05%), Postives = 134/316 (42.41%), Query Frame = 0

Query:  196 FEVVVEANPSLDAYPKLGTPETSSRSRSPSESISNSYSETSASPSSDPSYTCPICGNPAGKHSYYGAQVCSSCRAFFRRSIQKSAHEEFICRSGQSCRIDSKSWKSCKFCRFQSCLAVGMNPQWVMNQEERGNRNAKRNYLQNLRQKQPMMGAQSRTVLSKPRIDIVVRWTSDEECQIRGLKDLFSDYATKVIANFHSENPRMLQQFVDNLNKGTSINLKEYVFADHFIRSQVVNFYDNLSDFQEIPVSDRRQLFAFNFPLNAHLMEALVYHHPKESRRNIQDFMT--RLQT---FTDQDESLEEVNQMMSTVILD 506
            F  +V  +P LD   +L  P TS+++RS +   S                 C +CG+ A    +YG + C  C+ FF+R++QK+A  ++IC + + C +D +    C+FCRFQ CLAVGM  + V     +G R    +     + KQP   + +  + S      +VR   D       L   +S +    + +F  E+   +QQF D L+    +               +  + + +  F E+   D+  L    F L   ++       P E +      +   RLQ    F D  +S+   ++ + ++++D
Sbjct:  230 FPGLVPTSPHLDGSGRLDAPVTSAKARSGAPGGSEG--------------RCAVCGDNASCQ-HYGVRTCEGCKGFFKRTVQKNA--KYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPS-----KPKQPPETSPAHLLTS------LVRAHLDSGPSTSKLD--YSKFQELALPHFGKEDAGDVQQFYDLLSGSLEV---------------IRKWAEKIPGFAELSPGDQDLLLESAF-LELFILRLAYRSKPAEGKLIFCSGLVLHRLQCARGFGDWIDSILAFSRSLHSLVVD 499

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BLAST of nuclear receptor vs. SwissProt
Match: gi|127819|sp|P22736.1|NR4A1_HUMAN (RecName: Full=Nuclear receptor subfamily 4 group A member 1; AltName: Full=Early response protein NAK1; AltName: Full=Nuclear hormone receptor NUR/77; Short=Nur77; AltName: Full=Orphan nuclear receptor HMR; AltName: Full=Orphan nuclear receptor TR3; AltName: Full=ST-59; AltName: Full=Testicular receptor 3)

HSP 1 Score: 87.4261 bits (215), Expect = 9.927e-17
Identity = 76/316 (24.05%), Postives = 135/316 (42.72%), Query Frame = 0

Query:  196 FEVVVEANPSLDAYPKLGTPETSSRSRSPSESISNSYSETSASPSSDPSYTCPICGNPAGKHSYYGAQVCSSCRAFFRRSIQKSAHEEFICRSGQSCRIDSKSWKSCKFCRFQSCLAVGMNPQWVMNQEERGNRNAKRNYLQNLRQKQPMMGAQSRTVLSKPRIDIVVRWTSDEECQIRGLKDLFSDYATKVIANFHSENPRMLQQFVDNLNKGTSINLKEYVFADHFIRSQVVNFYDNLSDFQEIPVSDRRQLFAFNFPLNAHLMEALVYHHPKESRRNIQDFMT--RLQT---FTDQDESLEEVNQMMSTVILD 506
            F  +   +P L+    L TP TS+++RS +   S                 C +CG+ A    +YG + C  C+ FF+R++QK+A  ++IC + + C +D +    C+FCRFQ CLAVGM  + V     +G R    +     + KQP   + +  + S      +VR   D       L   +S +   V+ +F  E+   +QQF D L+    +               +  + + +  F E+  +D+  L    F L   ++       P E +      +   RLQ    F D  +S+   ++ + ++++D
Sbjct:  230 FPGLAPTSPHLEGSGILDTPVTSTKARSGAPGGSEG--------------RCAVCGDNASCQ-HYGVRTCEGCKGFFKRTVQKNA--KYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPS-----KPKQPPDASPANLLTS------LVRAHLDSGPSTAKLD--YSKFQELVLPHFGKEDAGDVQQFYDLLSGSLEV---------------IRKWAEKIPGFAELSPADQDLLLESAF-LELFILRLAYRSKPGEGKLIFCSGLVLHRLQCARGFGDWIDSILAFSRSLHSLLVD 499

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BLAST of nuclear receptor vs. SwissProt
Match: gi|52788288|sp|Q90416.2|RXRGA_DANRE (RecName: Full=Retinoic acid receptor RXR-gamma-A; AltName: Full=Nuclear receptor subfamily 2 group B member 3-A; AltName: Full=Retinoic acid receptor RXR-alpha; AltName: Full=Retinoid X receptor alpha; AltName: Full=Retinoid X receptor gamma-A)

HSP 1 Score: 86.2705 bits (212), Expect = 1.181e-16
Identity = 43/128 (33.59%), Postives = 66/128 (51.56%), Query Frame = 0

Query:  208 AYPKLGTPE-------TSSRSRSPSESISNSYSETSASPSSDPSYTCPICGN-PAGKHSYYGAQVCSSCRAFFRRSIQKSAHEEFICRSGQSCRIDSKSWKSCKFCRFQSCLAVGMNPQWVMNQEERG 327
             Y  L +P+       +SS    P   ++   S    SP S   + C ICG+  +GKH  YG   C  C+ FF+R+I+K     + CR  + C+ID +    C++CR+Q CLA+GM  + V  + +RG
Sbjct:   71 GYGALNSPQMNSLNSVSSSEDIKPPPGLAGLGSYPCGSPGSLSKHICAICGDRSSGKH--YGVYSCEGCKGFFKRTIRKDL--TYTCRDNKDCQIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRG 194

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BLAST of nuclear receptor vs. SwissProt
Match: gi|341942103|sp|P33242.3|STF1_MOUSE (RecName: Full=Steroidogenic factor 1; Short=SF-1; Short=STF-1; AltName: Full=Adrenal 4-binding protein; AltName: Full=Embryonal LTR-binding protein; Short=ELP; AltName: Full=Embryonal long terminal repeat-binding protein; AltName: Full=Fushi tarazu factor homolog 1; AltName: Full=Nuclear receptor subfamily 5 group A member 1; AltName: Full=Steroid hormone receptor Ad4BP; AltName: Full=Steroid hydroxylase positive regulator)

HSP 1 Score: 86.2705 bits (212), Expect = 1.210e-16
Identity = 37/84 (44.05%), Postives = 49/84 (58.33%), Query Frame = 0

Query:  247 CPICGNPAGKHSYYGAQVCSSCRAFFRRSIQKSAHEEFICRSGQSCRIDSKSWKSCKFCRFQSCLAVGMNPQWVMNQEERGNRN 330
            CP+CG+    + +YG   C SC+ FF+R++Q + H  + C   QSC+ID    K C FCRFQ CL VGM  + V     RG RN
Sbjct:   13 CPVCGDKVSGY-HYGLLTCESCKGFFKRTVQNNKH--YTCTESQSCKIDKTQRKRCPFCRFQKCLTVGMRLEAVRADRMRGGRN 93

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BLAST of nuclear receptor vs. SwissProt
Match: gi|1703164|sp|P50569.1|STF1_RAT (RecName: Full=Steroidogenic factor 1; Short=SF-1; Short=STF-1; AltName: Full=Adrenal 4-binding protein; AltName: Full=Fushi tarazu factor homolog 1; AltName: Full=Nuclear receptor subfamily 5 group A member 1; AltName: Full=Steroid hormone receptor Ad4BP)

HSP 1 Score: 86.2705 bits (212), Expect = 1.243e-16
Identity = 37/84 (44.05%), Postives = 49/84 (58.33%), Query Frame = 0

Query:  247 CPICGNPAGKHSYYGAQVCSSCRAFFRRSIQKSAHEEFICRSGQSCRIDSKSWKSCKFCRFQSCLAVGMNPQWVMNQEERGNRN 330
            CP+CG+    + +YG   C SC+ FF+R++Q + H  + C   QSC+ID    K C FCRFQ CL VGM  + V     RG RN
Sbjct:   13 CPVCGDKVSGY-HYGLLTCESCKGFFKRTVQNNKH--YTCTESQSCKIDKTQRKRCPFCRFQKCLTVGMRLEAVRADRMRGGRN 93

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BLAST of nuclear receptor vs. SwissProt
Match: gi|1709262|sp|P51666.1|NR4A1_CANFA (RecName: Full=Nuclear receptor subfamily 4 group A member 1; AltName: Full=Orphan nuclear receptor HMR; AltName: Full=Orphan nuclear receptor NGFI-B)

HSP 1 Score: 87.0409 bits (214), Expect = 1.247e-16
Identity = 93/377 (24.67%), Postives = 154/377 (40.85%), Query Frame = 0

Query:  196 FEVVVEANPSLDAYPKLGTPETSSRSRSPSESISNSYSETSASPSSDPSYTCPICGNPAGKHSYYGAQVCSSCRAFFRRSIQKSAHEEFICRSGQSCRIDSKSWKSCKFCRFQSCLAVGMNPQWVMNQEERGNRNAKRNYLQNLRQKQPMMGAQSRTVLSKPRIDIVVRWTSDEECQIRGLKDLFSDYATKVIANFHSENPRMLQQFVDNLNKGTSINLKEYVFADHFIRSQVVNFYDNLSDFQEIPVSDRRQLFAFNFPLNAHLMEALVYHHPKESRRNIQDFMT--RLQT---FTDQDESLEEVNQMMSTVILDDNVQDKIDRL---HDTHIYSEDSKQKRV-ELSNAIQQWPKTSPNGLADE-----VLTTLLG 558
            F  +   +P LD    L  P  S+++RS + S S                 C +CG+ A    +YG + C  C+ FF+R++QK+A  ++IC + + C +D +    C+FCRFQ CLAVGM  + V     +G R    +     + KQP   + +  + S      +VR   D       L   +S +   V+ +F  E+   +QQF D L+    +               +  + + +  F E+   D+  L    F L   ++       P E +      +   RLQ    F D  +S+   ++ +  +++D      +  L    D H   E    +RV EL N I    K   + +A E      L+ LLG
Sbjct:  230 FPGLAPTSPHLDGPGMLDAPVPSAKARSGAPSGSEG--------------RCAVCGDNASCQ-HYGVRTCEGCKGFFKRTVQKNA--KYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPS-----KPKQPPDASPANLLTS------LVRAHLDSGPSTAKLD--YSKFQELVLPHFGKEDAGDVQQFYDLLSGSLEV---------------IRKWAEKIPGFAELSPGDQDLLLESAF-LELFILRLAYRSKPAEGKLIFCSGLVLHRLQCARGFGDWIDSILAFSRSLHGLVVDVPAFACLSALVLITDRHGLQEP---RRVEELQNRIASCLKEHVSAVAGEPQPASCLSRLLG 557

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BLAST of nuclear receptor vs. SwissProt
Match: gi|160221327|sp|P79387.3|STF1_PIG (RecName: Full=Steroidogenic factor 1; Short=SF-1; Short=STF-1; AltName: Full=Adrenal 4-binding protein; AltName: Full=Fushi tarazu factor homolog 1; AltName: Full=Nuclear receptor subfamily 5 group A member 1; AltName: Full=Steroid hormone receptor Ad4BP)

HSP 1 Score: 86.2705 bits (212), Expect = 1.316e-16
Identity = 37/84 (44.05%), Postives = 49/84 (58.33%), Query Frame = 0

Query:  247 CPICGNPAGKHSYYGAQVCSSCRAFFRRSIQKSAHEEFICRSGQSCRIDSKSWKSCKFCRFQSCLAVGMNPQWVMNQEERGNRN 330
            CP+CG+    + +YG   C SC+ FF+R++Q + H  + C   QSC+ID    K C FCRFQ CL VGM  + V     RG RN
Sbjct:   13 CPVCGDKVSGY-HYGLLTCESCKGFFKRTVQNNKH--YTCTESQSCKIDKTQRKRCPFCRFQKCLTVGMRLEAVRADRMRGGRN 93

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BLAST of nuclear receptor vs. SwissProt
Match: gi|416584|sp|Q04752.1|STF1_BOVIN (RecName: Full=Steroidogenic factor 1; Short=SF-1; Short=STF-1; AltName: Full=Adrenal 4-binding protein; AltName: Full=Fushi tarazu factor homolog 1; AltName: Full=Nuclear receptor subfamily 5 group A member 1; AltName: Full=Steroid hormone receptor Ad4BP)

HSP 1 Score: 85.8853 bits (211), Expect = 1.559e-16
Identity = 37/84 (44.05%), Postives = 49/84 (58.33%), Query Frame = 0

Query:  247 CPICGNPAGKHSYYGAQVCSSCRAFFRRSIQKSAHEEFICRSGQSCRIDSKSWKSCKFCRFQSCLAVGMNPQWVMNQEERGNRN 330
            CP+CG+    + +YG   C SC+ FF+R++Q + H  + C   QSC+ID    K C FCRFQ CL VGM  + V     RG RN
Sbjct:   13 CPVCGDKVSGY-HYGLLTCESCKGFFKRTVQNNKH--YTCTESQSCKIDKTQRKRCPFCRFQKCLTVGMRLEAVRADRMRGGRN 93

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BLAST of nuclear receptor vs. SwissProt
Match: gi|3121738|sp|Q13285.2|STF1_HUMAN (RecName: Full=Steroidogenic factor 1; Short=SF-1; Short=STF-1; Short=hSF-1; AltName: Full=Adrenal 4-binding protein; AltName: Full=Fushi tarazu factor homolog 1; AltName: Full=Nuclear receptor subfamily 5 group A member 1; AltName: Full=Steroid hormone receptor Ad4BP)

HSP 1 Score: 85.5001 bits (210), Expect = 2.020e-16
Identity = 37/84 (44.05%), Postives = 49/84 (58.33%), Query Frame = 0

Query:  247 CPICGNPAGKHSYYGAQVCSSCRAFFRRSIQKSAHEEFICRSGQSCRIDSKSWKSCKFCRFQSCLAVGMNPQWVMNQEERGNRN 330
            CP+CG+    + +YG   C SC+ FF+R++Q + H  + C   QSC+ID    K C FCRFQ CL VGM  + V     RG RN
Sbjct:   13 CPVCGDKVSGY-HYGLLTCESCKGFFKRTVQNNKH--YTCTESQSCKIDKTQRKRCPFCRFQKCLTVGMRLEAVRADRMRGGRN 93

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BLAST of nuclear receptor vs. SwissProt
Match: gi|49036495|sp|Q9GKL2.1|STF1_HORSE (RecName: Full=Steroidogenic factor 1; Short=SF-1; Short=STF-1; AltName: Full=Nuclear receptor subfamily 5 group A member 1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.525e-16
Identity = 37/84 (44.05%), Postives = 49/84 (58.33%), Query Frame = 0

Query:  247 CPICGNPAGKHSYYGAQVCSSCRAFFRRSIQKSAHEEFICRSGQSCRIDSKSWKSCKFCRFQSCLAVGMNPQWVMNQEERGNRN 330
            CP+CG+    + +YG   C SC+ FF+R++Q + H  + C   QSC+ID    K C FCRFQ CL VGM  + V     RG RN
Sbjct:   13 CPVCGDKVSGY-HYGLLTCESCKGFFKRTVQNNKH--YTCTESQSCKIDKTLRKRCPFCRFQKCLTVGMRLEAVRADRMRGGRN 93

[Close]

BLAST of nuclear receptor vs. nr
Match: gi|657600346|gb|AID52834.1| (nuclear receptor [Tigriopus japonicus])

HSP 1 Score: 310.457 bits (794), Expect = 3.935e-95
Identity = 156/396 (39.39%), Postives = 248/396 (62.63%), Query Frame = 0

Query:  232 YSETSASPSSD-PSYTCPICGNPAGKHSYYGAQVCSSCRAFFRRSIQKSAHEEFICRSGQSCRIDSKSWKSCKFCRFQSCLAVGMNPQWVMNQEERGNRNAKRNYLQNLRQKQPMMGAQSRTVLSKPRIDIVVRWTSDEECQIRGLKDLFSDYATKVIANFHSENPRMLQQFVDNLNKGTSINLKEYVFADHFIRSQVVNFYDNLSDFQEIPVSDRRQLFAFNFPLNAHLMEALVYHHPKE---SRRNIQDFMTRLQTFTDQDES--LEEVNQMMSTVILDDNVQ--DKIDRLHDTHIYSEDSKQKRVELSNAIQQWPKTSPNGLADEVLTTLLGLIIILSPDFLNLKDATRVSQAQTKYSVMLHRYLKAKLPTKAHAKFGQGIELISKLRELTTI 619
            + ++S S S +  ++ CP+CGNP+GKH YYGAQVCSSCRAFFRRS   SA EEF C++ + C IDSKSWKSCKFCRFQ CL+ GM P WVMN EER  RNAKR   +  R    +    S  VLS        +WT DE+ QIRG+++   +  + +IA F+++NP +L +F+   N  T  +     +   F+ + ++  ++ L   Q I   DR  L + N+ + +   EA+++ + +E   +++N+++ + +++T  D D++  ++ + + M  + L+DNV+  D ID L    I  + ++ +R  L  +IQ WPK + NG++D++LTTL+ +I+I  PD L L   + VSQ Q +Y  +L+RY+ +K P +AH+K G+G+E++SK+RE+T +
Sbjct:   99 FHQSSGSSSCETAAFHCPVCGNPSGKHLYYGAQVCSSCRAFFRRSTINSAAEEFRCKADKKCGIDSKSWKSCKFCRFQKCLSAGMRPNWVMNDEERTQRNAKRKRTRTKRVDNVV----SEAVLSH-------QWTVDEDLQIRGIREEIFEKTSCIIAKFYADNPMILNKFIACANNRTPFDSVLLAYTKRFVSNGMMKMFNELLVLQHINPMDRFLLLSRNYAMWSSFEEAILFKNRQEVIKNQQNVRNSLNKIKTSADGDQAFNVDMIQEAMDKISLEDNVESSDVIDNL----IQDQQTRDRRRSLITSIQAWPKFNANGVSDDILTTLMMMILICCPDALQLNSESAVSQFQNQYCYILYRYINSKYPGQAHSKLGEGMEIVSKVREMTAM 479

[Close]

BLAST of nuclear receptor vs. nr
Match: gi|657600348|gb|AID52835.1| (nuclear receptor [Tigriopus japonicus])

HSP 1 Score: 281.952 bits (720), Expect = 3.205e-84
Identity = 155/396 (39.14%), Postives = 228/396 (57.58%), Query Frame = 0

Query:  229 SNSYSETSASPS-SDPSYTCPICGNPAGKHSYYGAQVCSSCRAFFRRSIQKSAHEEFICRSGQSCRIDSKSWKSCKFCRFQSCLAVGMNPQWVMNQEERGNRNAKRNYLQNLRQKQPMMGAQSRTVLSKPRIDIVVRWTSDEECQIRGLKDLFSDYATKVIANFHSENPRMLQQFVDNLNKGTSINLKEYVFADHFIRSQVVNFYDNLSDFQEIPVSDRRQLFAFNFPLNAHLMEALVYHHPKESRRNIQDFMTRLQTFTDQDE-----SLEEVNQMMSTVILDDNVQ--DKIDRLHDTHIYSEDSKQKRVELSNAIQQWPKTSPNGLADEVLTTLLGLIIILSPDFLNLKDATRVSQAQTKYSVMLHRYLKAKLPTKAHAKFGQGIELISKLREL 616
            S+ +S+T  +P+ S P   CP+C NP+GKHSYYGAQVC SCRAFFRRS   S   EF C+  ++C I+SKSWKSCKFCR+Q CL+ GM   WV+N EER  RNA R  L+ +R+      A S T +         +WT+DEE QIR  ++ F      VIA F S NP +  ++VD LN  T  +     +   FI S+V+    +L   ++I   DR  L + N+PL     EA+ + + +E  +  Q F   ++T     +     +++ + +    + + DN    DK++ L    I  +  +++R +L  +IQ WPK S  GLAD++L TL+ +I+I S D L L+    VS+ Q +Y  ML+RY+  K P KAH K G+G+E++SK+RE+
Sbjct:   89 SSDFSDTPRTPNLSKPHRECPVCDNPSGKHSYYGAQVCFSCRAFFRRSTINSTFTEFQCKDSKTCGINSKSWKSCKFCRYQKCLSAGMKSTWVLNDEERVQRNANRKRLRKIREAGV---AFSETFIGN-------QWTTDEEHQIRQARNDFLLKGFGVIAQFCSSNPNIFDRYVDCLNGNTPFDPMLVGYTRRFIYSEVMKSISDLLIMKDIHPVDRFLLLSHNYPLWVSFEEAVQFRNHQEMEKIQQTFSKCIRTLKSSSDLWPNANIDHLQRTFDKLSVHDNANFLDKLNNL----ITDQSMRRRRTQLITSIQSWPKISSRGLADDILLTLMTMILIFSSDSLKLQSEGVVSKIQNQYCYMLYRYVNFKSPGKAHVKLGEGMEIVSKVREV 470

[Close]

BLAST of nuclear receptor vs. nr
Match: gi|728054565|gb|AIY67762.1| (HR97a-like receptor 6 [Tigriopus japonicus])

HSP 1 Score: 223.787 bits (569), Expect = 4.619e-62
Identity = 137/423 (32.39%), Postives = 210/423 (49.65%), Query Frame = 0

Query:  214 TPETSSRSRSPSESISNSYSETSASPSS-DPSYTCPICGNPAGKHSYYGAQVCSSCRAFFRRSIQKSAHEEFICRSGQSCRIDSKSWKSCKFCRFQSCLAVGMNPQWVMNQEE-----RGNRNAKRNYLQNLRQKQPMMGAQSRTVLSKPRIDIVVRWTSDEECQIRGLKDLFSDYATKVIANFHSENPRMLQQFVDNLNKGTSINLKEYVFADHFIRSQVVN-------FYDNLSDFQEIPVSDRRQLFAFNFPLNAHLMEALVYHHPKESRRNIQDFMTRLQTFTDQDESLEEVNQMMSTVILDDNVQDKI--DRLHDTHIYSEDSKQKRVE--LSNAIQQWPKTSPNGLADEVLTTLLGLIIILSPDFLNLKDATRVSQAQTKYSVMLHRYLKAKLPTKAHAKFGQGIELISKLRELTTI 619
            +P+ S  S      +S     +S  P +      C +CGN AGKH YYG QVC SCRAFFRR++   ++ EF C   + C I+SKSWKSC+FCRFQ CL  GM   WV  +++     +G++   +  L       P    Q           I ++WT +EEC +RG  +   +    VI +F++ +P      +       S+    ++    F   Q+VN       F+    D  ++  +D+ QL   N  L   L   + Y + ++  +  + +  RL+    QDES + V  M+S   L D+ +D I  +      + S D + K +E  L   IQ+W +  P+G  D ++ TL+G +II  P+  NL+D  +V   QTK+  ML RYLKAK+P +A  K GQ +E I+KLR L+ +
Sbjct:   72 SPQISDDSEMCKSDVSFKQVSSSVEPEAIKTQLICLVCGNAAGKHCYYGGQVCVSCRAFFRRAVLGKSYSEFKCSKEEQCVINSKSWKSCRFCRFQKCLQSGMRIAWVTTEDKPSGPSKGSKAKPKGKL-----IVPTSAIQR---------SIQLKWTLEEECYVRGFYNHAWENWCHVITDFYARHPVYFASIISVFLLDFSVENNPFMTKSEFY-GQMVNMELSFKRFWFTHPDMNDLCQADQEQLVNENNDLIFTLCRCVQYLNAQDVAKYSRLYRDRLKERASQDESCQNVVAMLSNFTLSDHPEDNITPNTTTSLCLLSADDESKSLESSLMTEIQEWNRLFPHGPCDPIMQTLMGYLIIFDPNMKNLQDYKKVCDIQTKFLHMLQRYLKAKVPKQATKKIGQAVEFITKLRTLSNL 479

[Close]

BLAST of nuclear receptor vs. nr
Match: gi|657600344|gb|AID52833.1| (nuclear receptor [Tigriopus japonicus])

HSP 1 Score: 169.474 bits (428), Expect = 1.103e-41
Identity = 129/474 (27.22%), Postives = 217/474 (45.78%), Query Frame = 0

Query:  156 GLGLNGHMANESSSLSRPPPIPSSSPNEPKLTLNLAAGSYFEVVVEANPSLDAYPKLGTPETSSRSRSPSESISNSYSETSASPSSDPSYTCPICGNPAGKHSYYGAQVCSSCRAFFRRSIQKSAHEEFICRSGQSCRIDSKSWKSCKFCRFQSCLAVGMNPQWVMNQEERGNRNAKRNYLQNLRQKQPMMGAQSRTVLSKPRIDIVVRWTSDEEC-QIRGLKDLFSDYATKVIANFHSENPRMLQQFVDNLNKGTSINLKEYVFADHFIRSQVVNFYDNLS-DFQEIPVSDRRQLFAFNFPLNAHLMEALVYHHPKESRRNIQDFMTRLQTFTDQDESLEEVNQMMSTVILDDNVQDKIDRLHDTHIY------SEDSKQKRVELSNAIQQWPKTSPNGLADEVLTTLLGLIIILSPDFLNLKDATRVSQAQTKYSVMLHRYLKAKLPTKAHAK-FGQGIELISKLRELTTIL 620
            G+ L+    N SSSL         SP++P+   N  +    E++++ NP          P+ S  +    E++  S    +  PS+  +  C IC   AGKH+YYG + C SCRAFFRR++Q   +E F C  G+ C I+ K+ +SC+FCRF+ CLA GM   WV+   ER  R  K +  ++ ++    +    + V  KP+  + ++     E   IRG+         K +  F    P  +++  +    G   ++ +++     +  +  +F    S +F+ +   DRRQL   N PL      ++          N  +  T+   F   ++ +E++ Q+        N+ D+   L     Y      S++++ +   L   ++ WP+ +     DE+  TL  +II  SPDFLNL+  + V   Q KY  MLHRYL  +   KA  K    G+ + +  RE  +I+
Sbjct:  129 GISLSPETTNFSSSLG--------SPDDPE---NFPS----ELILQVNPE---------PQKSPGALDSEENLPKS----TMPPSNWDNTKCYICQEKAGKHNYYGGKACPSCRAFFRRAVQSKYYEIFFCNKGEKCEINLKTRRSCQFCRFKKCLASGMRVAWVLPDGERNRRFNKLH--KSAKKNNSQIEGDLKVVAKKPKGPLEIQGVLPGEIDMIRGVHMKVDSLGAKSLREFILAQPEFMKKLANFSYFGGQPDM-DFIQKFQLMCDRFAHFVLTTSEEFKMLSFGDRRQLIEVNGPLLNRFKCSVTIQETNSCLVNGIEQATKSGEFPYLNDIVEKLAQL--------NMTDRKPILAYNQFYASPWASSKEAEGRYFNLMIKMKAWPRDNIASPVDEIQMTLAKMIIAFSPDFLNLEQRSVVEAIQMKYVSMLHRYLVFRYGAKAATKRLAAGLMMSTYAREAQSIV 563

[Close]

BLAST of nuclear receptor vs. nr
Match: gi|728054567|gb|AIY67763.1| (HR97a-like receptor 4 [Tigriopus japonicus])

HSP 1 Score: 146.747 bits (369), Expect = 1.784e-34
Identity = 112/382 (29.32%), Postives = 185/382 (48.43%), Query Frame = 0

Query:  247 CPICGNPAGKHSYYGAQVCSSCRAFFRRSIQKSAHEEFICRSGQSCRIDSKSWKSCKFCRFQSCLAVGMNPQWVMNQEERGNR-NAKRNYLQNLRQKQPMMGAQSRTVLSKPRIDIVVRWTSDEECQIRGLKDLFSDYATKVIANFHSENPRMLQQFVDNLNKGTSINLKE-YVFADHFIRSQVVNFYD----NLSDFQEIPVSDRRQLFAFNFPLNAHLMEALVYHHPKESRRNIQDFMTRLQTFTDQDESLEEVNQMMSTVILDDNVQDKIDRLHDTHIYS------EDSKQKRVELSNAIQQWPKTSPNGLADEVLTTLLGL-IIILSPDFLNLKDATRVSQAQTKYSVMLHRYLKAKLPTKAHAKFGQGIELISKLRE 615
            C +C  PAGKH+YYG QVC SCRAFFRRSIQ   H  + C++ + C IDSKS KSC +CRFQ CL  GMNP+W++  +ER  +  AK++ +   + KQ ++  Q      +P   + +++T +E+ ++  L      +   V+AN  +++   L+          ++NL+   V   HF+  +    +      L +  ++   DR  L   N      L+ + +Y +P +  R+++D    L      ++   ++   + T  L+         L     YS      E+    +  + N IQ   +  PN   D ++  ++ L +I LS     LKD  +V + Q     MLHRYL++K   KA  K G+ + L+S  +E
Sbjct:   71 CHVCNLPAGKHNYYGGQVCESCRAFFRRSIQNQTHPIYHCKAKKCCIIDSKSRKSCAWCRFQKCLLAGMNPKWIITDQERKFKLEAKQSKIMKAKMKQEIVPIQ------RP---VELKFTVEEKLKVERLSKYARKFKVSVLANHLAQDIAPLKTLW-----KLALNLETPSVDFIHFLEEKETTIFRTIALGLEEMTDLDSEDRETLVQRNSTAFFALIMS-IYFNPGDFARHLEDVTEALDIALQANDPNPDLKNAVET--LEVIKMSNFPGLSFETFYSNCPNKDENLSNAQRNIMNKIQSALREMPNKPIDAIIICIVILNLIFLSDGSSPLKDGKKVERIQNDQIFMLHRYLRSKYGDKASGKMGKLVMLMSYTQE 435

[Close]

BLAST of nuclear receptor vs. nr
Match: gi|657600350|gb|AID52836.1| (nuclear receptor [Tigriopus japonicus])

HSP 1 Score: 146.747 bits (369), Expect = 2.103e-34
Identity = 103/375 (27.47%), Postives = 182/375 (48.53%), Query Frame = 0

Query:  247 CPICGNPAGKHSYYGAQVCSSCRAFFRRSIQKSAHEEFICRSG-QSCRIDSKSWKSCKFCRFQSCLAVGMNPQWVMNQEERGNRNAKRNYLQNLRQKQPMMGAQSRTVLSKPRIDIVVRWTSDEECQIRGLKDLFSDYATKVIANFHSENPRMLQQFVDNLN-KGTSINLKEYVFADHFIRSQVVNFYDNLSDFQEIPVSDRRQLFAFNFPLNAHLMEALVYHHPKESRRNIQDFMTRLQTFTDQDESLEEVNQMM-STVILDDNVQD-KIDRLHDTHIYSEDSKQKRVELSNAIQQWPKTSPNGLADEVLTTLLGLIIILSPDF-LNLKDATRVSQAQTKYSVMLHRYLKAKLPTKAHAKFGQGIELISKLREL 616
            CPIC + AGKH YYG Q C SCR FF+RS++   H +FIC  G Q+CRI ++S K+CK+CRFQ CL  GM   +VM  ++ G           L  K  ++      V +     I      D+   I   K+L S +  +      S+N +    F+  LN +G   ++    F +   +   +N++ ++ D   +   DR  L + NFP    L+ + VY +  +     ++F+     F D++  ++++  +  +  +L    ++  ID    ++  ++D  Q+   L + +    + S    AD ++  LL  II+ + +F ++L+D  ++   Q KY V+LHRYL+     +A AK  + + +    R++
Sbjct:   91 CPICNDVAGKHFYYGVQACISCRGFFQRSVRNRFHLKFICCKGTQNCRITARSRKNCKWCRFQKCLQSGMKTCYVMTHDKSG-----------LPPKSKLILPIKAMVKTANLSQIFTEHEVDKALSI--YKNLLS-FGYRSYYQLFSQNEQEFMTFLRALNDQGGGPSMISEAFTET-NKQATINYFFSIDDMASLTPFDRMTLISHNFPSIFGLLWS-VYSYTPDLCTFYEEFLKHGYEFRDREPEIDKILMVFEANQLLGKKPKNLTIDVTFRSNSATQDLIQRHDNLVHEVNSGLRESSQSSADYIIVMLLSHIIMFATEFAVSLQDKAKIQATQEKYLVLLHRYLRTHYQGRARAKLSETMMIFEPCRQV 449

[Close]

BLAST of nuclear receptor vs. nr
Match: gi|657600342|gb|AID52832.1| (nuclear receptor [Tigriopus japonicus])

HSP 1 Score: 140.584 bits (353), Expect = 1.318e-32
Identity = 102/388 (26.29%), Postives = 181/388 (46.65%), Query Frame = 0

Query:  242 DPSYTCPICGNPAGKHSYYGAQVCSSCRAFFRRSIQKSAHEEFIC-RSGQSCRIDSKSWKSCKFCRFQSCLAVGMNPQWVMNQEERGNRNAKRNYLQNLRQKQPMMGAQSRTVLSKPRIDIVVRWTSDEECQIRGLKDLFSDYATKVIANFHSENPRMLQQFVDNLNKGTS-INLKE--YVFADHFIRSQVVNFYDNLSDFQEIPVSDRRQLFAFNFPLNAHLMEALVYHHPKESRRNIQDFMTRLQTFTDQDESLEEVNQMMSTVILDDNVQDKIDRLHDTHIYSE------DSKQKRVELSNAIQQWPKTSPNGLADEVLTTLLGLIIILSPDFLNLKDATRVSQAQTKYSVMLHRYLKAKLPTKAHAKFGQGIELISKLRELTTI 619
            D    C +CG+ AG+H+YYG Q CS CRAFFRR +Q+      IC  +   C ++  + + C+FCRF  CLA+GM P WV++  ER     +R Y +       +  A  ++ +S  RI ++V  T+D       +K + + +   +      +   + +  V +   G S     E  Y   D+F+  QV++   ++ +F+ +PV D+++L   N      L  A+  H          +   +   F   ++  +E++           + +   RL  + ++S         +++ + L N +Q WP+       D+V   LL LII+ S +F+NL+    V Q Q K+  +L +Y+K +   +A  + G G+ L+S  +E   I
Sbjct:   42 DLRRICQVCGDEAGQHNYYGGQSCSGCRAFFRRIVQRDLQANLICVDNSNECVVNKSTRRRCQFCRFHRCLAIGMRPGWVLSDHER-----ERRYRKTANGSHAVSIATQKSPVSN-RISLLVLTTNDNTHITAHMKMMDAHFVRNMDVVCAQKQDFIRKMAVMSYFGGQSDFEFYEEFYSLCDNFV-FQVMS---SVLEFRSLPVQDQQELVRVNGQYMVALKYAVSLHETDWCFVYFLERALKSGKFPYLNDFAQELDAF--------GMSEHKPRLMYSQVFSSPWAASAADEERHLFLVNKMQSWPRKDAQDRVDDVQMNLLKLIILFSSEFVNLQRPDIVEQTQMKFIGLLQKYMKFRYGPEAGVRLGNGLMLLSYAKEAIDI 411

[Close]

BLAST of nuclear receptor vs. nr
Match: gi|1325258266|ref|XP_023325470.1| (uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258271|ref|XP_023325479.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258277|ref|XP_023325484.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258282|ref|XP_023325492.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258289|ref|XP_023325500.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258292|ref|XP_023325508.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258296|ref|XP_023325515.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258300|ref|XP_023325523.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258306|ref|XP_023325531.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258311|ref|XP_023325539.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258315|ref|XP_023325547.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258319|ref|XP_023325554.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258329|ref|XP_023325561.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258334|ref|XP_023325570.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258338|ref|XP_023325578.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258342|ref|XP_023325585.1| uncharacterized protein LOC111699122 [Eurytemora affinis])

HSP 1 Score: 115.161 bits (287), Expect = 5.361e-23
Identity = 45/87 (51.72%), Postives = 59/87 (67.82%), Query Frame = 0

Query:  243 PSYTCPICGNPAGKHSYYGAQVCSSCRAFFRRSIQKSAHEEFICRSGQSCRIDSKSWKSCKFCRFQSCLAVGMNPQWVMNQEERGNR 329
            P+  C IC  PA KH +YGA  C SCRAFFRRSIQ      + CR  Q+C I+ ++ K+C+FCR+Q CL+VGM   WV+++EER  R
Sbjct:   37 PTEKCKICNEPAAKHIHYGAMTCFSCRAFFRRSIQNKTANSYTCRRSQNCEINLRTRKNCQFCRYQKCLSVGMKTNWVLSEEERQRR 123

[Close]

BLAST of nuclear receptor vs. nr
Match: gi|1216632197|gb|ASL70610.1| (nuclear receptor [Brachionus sp. 'koreanus'])

HSP 1 Score: 112.079 bits (279), Expect = 3.627e-22
Identity = 103/419 (24.58%), Postives = 188/419 (44.87%), Query Frame = 0

Query:  247 CPICGNPAGKHSYYGAQVCSSCRAFFRRSIQKSAHEEFICRSGQSCRIDSKSWKSCKFCRFQSCLAVGMNPQWVMNQEERGNRNAKRNYLQNLRQKQPMMGAQSRTVLSKPRIDIVVRWTSDEE--------CQIRGLKDL-------------FSDYATKV-----IANFHSE-----NPRMLQQFVDNLNKGTSINLKEY---VFADHFIR--SQVVNFYDNLSDFQEIPVSDRRQLFAFNFPLNAHLMEALV-----YHHPKESRRNIQDFMTRLQTFTDQDESLEEVNQMMSTVILDDNVQDKIDRLHDTHIYSEDSKQKRVELSNAIQQWPKTSPNGLADEVLTTLLGLIIILSPDFLNLKDATRVSQAQTKYSVMLHRYLKAKL-----PTKAHAKFGQGIELISKLRELTTI 619
            C +CG+ +   S++G   C SC+AFFRRS+QK+  E++ C     C++++ + K C+FCR+++CL++GM P+WV++ +ER  +   R   +  +QKQ +  A S    +K   +   + T+ +E        C    L  L              S Y   +     IA +HS      +  + ++F       +  +LK+    + A+  ++   +VV F   + DF+++ ++D+  L      L    ME  +      + P E+         + +    +D  ++  N        + N+Q    +L    I+SED  +K +    ++ Q          DE    L   +I+ SPD  +LKD  ++   Q+KYS++L +Y+  K       T+ + K      L+ KL EL T+
Sbjct:  112 CHVCGDKS-TGSHFGGISCESCKAFFRRSVQKNRFEDYKCSYSGECKMNTNTRKICQFCRYKTCLSIGMRPKWVLSDDERHQKYGNR---RKNKQKQEIAEADS----NKDENETKTQGTNSDEDSASPGADCNKNDLNKLGVDGINVRANGLNLSSYEKDLIDRLSIAYYHSRKFNAVDMNVQKKFATLFQTQSENSLKKMAKVILANFIVQPVKRVVTFAKLMPDFRKLDLNDQMCL------LQGGTMEVTICSSSSLYDPNEN---------KFENVISKDRDIKSSN--------NSNIQLDFLKL----IWSEDVLEKTIAFLKSMNQLN-------IDEATLILYLPLILFSPDRRDLKDRQKILHIQSKYSLLLKKYMIWKFGLNENTTRVYNK------LLLKLIELRTL 482

[Close]

BLAST of nuclear receptor vs. nr
Match: gi|1238896772|ref|XP_022235203.1| (vitamin D3 receptor-like [Limulus polyphemus])

HSP 1 Score: 108.612 bits (270), Expect = 1.836e-21
Identity = 108/413 (26.15%), Postives = 172/413 (41.65%), Query Frame = 0

Query:  217 TSSRSRSPSESISNSYSETSASPSSDPSYTCPICGNPAGKHSYYGAQVCSSCRAFFRRSIQKSAHEEFICRSGQSCRIDSKSWKSCKFCRFQSCLAVGMNPQWVMNQEERGNRNAKRNYLQNLRQKQPMMGAQSRTVLSKPRIDIVVRWTSDEECQIRGLKDLFSDYATKVIANFHSENPRMLQQ--FVDNLNKGTSINLKEYVFADHF-IRSQVVNFYDNLSDFQEIPVSDRRQLFAFNFPLNAHLMEALVYHHPKESRRNIQDFMTRLQTFTDQDESL---------EEVNQMMSTVILDDNVQDKIDRLHDTHIYSEDSKQKRVELSNAIQQWPKTSPNGLADEVLTTLLGLIIILSPDFLNLKDATRVSQAQTKYSVMLHRYLKAKL-PTKAHAKFGQGIELISKLREL 616
            +SS +  P+E  S S+S+            C +CG+ A K  ++G   C SC+AFFRRS+Q   ++ F C     C I   S K C++CRFQ CLA+GM   WVM +EER         L  LR +      Q  T   KPR    V   SD +  I  +    ++   + I +  +      Q   F + L   +S   +  +    F +  Q  +F  NL  F  IP SD++ L      L + +ME           R    F  R   + D+ ++L         E++ +++S  +                       +K ++    I++          DE    LL + I+LSPD  NL++   V++ Q KY ++L +Y+  +  P    A + +    +  LREL
Sbjct:    9 SSSSTGLPAEEASRSFSKHQK--------VCGVCGDRA-KSYHFGGISCDSCKAFFRRSVQNEGYKNFHCPYEGKCDITISSRKCCQYCRFQKCLAIGMEKGWVMTEEER---------LHLLRSRMEKRQRQGTTESDKPRRKTSV---SDYDPDINEMGKFLTENDVQDIESLITMYEVSYQAVGFSEKLTIQSSERSRTEIIDMFFTVIKQFAHFAQNLEGFSVIPHSDQQVL------LRSGVMEMCFL-------RGAYVFDERNGCWPDRRKTLYRDSPPLRAEDIKKLVSPTLF----------------------EKHMKFVIGIKELD-------PDEPTIMLLLVTILLSPDRSNLENVDLVTKQQEKYYILLKKYMLWRYGPNHTAALYPKLFLKLPDLREL 358

The following BLAST results are available for this feature:

BLAST of nuclear receptor vs. L. salmonis genes
BLAST of nuclear receptor vs. SwissProt
BLAST of nuclear receptor vs. nr

BLAST of nuclear receptor vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 23


Match Name	E-value	Identity	Description
EMLSAG00000010267	1.659e-30	26.47	supercontig:LSalAtl2s:LSalAtl2s680:110406:112508:1...	[more]
EMLSAG00000011907	7.827e-24	48.84	supercontig:LSalAtl2s:LSalAtl2s83:639505:641027:-1...	[more]
EMLSAG00000012651	1.969e-22	45.88	supercontig:LSalAtl2s:LSalAtl2s959:3535:5114:-1 ge...	[more]
EMLSAG00000008902	5.517e-18	34.84	supercontig:LSalAtl2s:LSalAtl2s554:572309:581835:1...	[more]
EMLSAG00000004174	7.518e-18	43.02	supercontig:LSalAtl2s:LSalAtl2s220:369739:371271:-...	[more]
EMLSAG00000008261	1.565e-17	47.37	supercontig:LSalAtl2s:LSalAtl2s49:858199:860758:1 ...	[more]
EMLSAG00000013004	3.052e-16	39.77	supercontig:LSalAtl2s:LSalAtl2s98:942409:953748:1 ...	[more]
EMLSAG00000001919	6.370e-15	33.33	supercontig:LSalAtl2s:LSalAtl2s132:616435:622808:1...	[more]
EMLSAG00000007361	6.315e-14	37.04	supercontig:LSalAtl2s:LSalAtl2s418:374353:376789:1...	[more]
EMLSAG00000008071	1.938e-13	35.35	supercontig:LSalAtl2s:LSalAtl2s47:304551:317770:1 ...	[more]

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BLAST of nuclear receptor vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|122142352\|sp\|Q0V8F0.1\|NR4A1_BOVIN	1.748e-17	24.05	RecName: Full=Nuclear receptor subfamily 4 group A...	[more]
gi\|127819\|sp\|P22736.1\|NR4A1_HUMAN	9.927e-17	24.05	RecName: Full=Nuclear receptor subfamily 4 group A...	[more]
gi\|52788288\|sp\|Q90416.2\|RXRGA_DANRE	1.181e-16	33.59	RecName: Full=Retinoic acid receptor RXR-gamma-A; ...	[more]
gi\|341942103\|sp\|P33242.3\|STF1_MOUSE	1.210e-16	44.05	RecName: Full=Steroidogenic factor 1; Short=SF-1; ...	[more]
gi\|1703164\|sp\|P50569.1\|STF1_RAT	1.243e-16	44.05	RecName: Full=Steroidogenic factor 1; Short=SF-1; ...	[more]
gi\|1709262\|sp\|P51666.1\|NR4A1_CANFA	1.247e-16	24.67	RecName: Full=Nuclear receptor subfamily 4 group A...	[more]
gi\|160221327\|sp\|P79387.3\|STF1_PIG	1.316e-16	44.05	RecName: Full=Steroidogenic factor 1; Short=SF-1; ...	[more]
gi\|416584\|sp\|Q04752.1\|STF1_BOVIN	1.559e-16	44.05	RecName: Full=Steroidogenic factor 1; Short=SF-1; ...	[more]
gi\|3121738\|sp\|Q13285.2\|STF1_HUMAN	2.020e-16	44.05	RecName: Full=Steroidogenic factor 1; Short=SF-1; ...	[more]
gi\|49036495\|sp\|Q9GKL2.1\|STF1_HORSE	2.525e-16	44.05	RecName: Full=Steroidogenic factor 1; Short=SF-1; ...	[more]

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BLAST of nuclear receptor vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|657600346\|gb\|AID52834.1\|	3.935e-95	39.39	nuclear receptor [Tigriopus japonicus]	[more]
gi\|657600348\|gb\|AID52835.1\|	3.205e-84	39.14	nuclear receptor [Tigriopus japonicus]	[more]
gi\|728054565\|gb\|AIY67762.1\|	4.619e-62	32.39	HR97a-like receptor 6 [Tigriopus japonicus]	[more]
gi\|657600344\|gb\|AID52833.1\|	1.103e-41	27.22	nuclear receptor [Tigriopus japonicus]	[more]
gi\|728054567\|gb\|AIY67763.1\|	1.784e-34	29.32	HR97a-like receptor 4 [Tigriopus japonicus]	[more]
gi\|657600350\|gb\|AID52836.1\|	2.103e-34	27.47	nuclear receptor [Tigriopus japonicus]	[more]
gi\|657600342\|gb\|AID52832.1\|	1.318e-32	26.29	nuclear receptor [Tigriopus japonicus]	[more]
gi\|1325258266\|ref\|XP_023325470.1\|	5.361e-23	51.72	uncharacterized protein LOC111699122 [Eurytemora a...	[more]
gi\|1216632197\|gb\|ASL70610.1\|	3.627e-22	24.58	nuclear receptor [Brachionus sp. 'koreanus']	[more]
gi\|1238896772\|ref\|XP_022235203.1\|	1.836e-21	26.15	vitamin D3 receptor-like [Limulus polyphemus]	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold148_size310697	supercontig	scaffold148_size310697:53640..56951 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
maker	2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides	2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt	2018-04-19
T. kingsejongensis proteins Blastp vs. NR	2018-05-15

Properties


Property Name	Value
Note	F:sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
snap_masked-scaffold148_size310697-processed-gene-0.3-mRNA-1	snap_masked-scaffold148_size310697-processed-gene-0.3-mRNA-1	Tigriopus kingsejongensis	mRNA

Sequences

The following sequences are available for this feature:

gene from alignment at scaffold148_size310697:53640..56951+

gene from alignment at scaffold148_size310697:53640..56951+

Legend: mRNA

Hold the cursor over a type above to highlight its positions in the sequence below.

>snap_masked-scaffold148_size310697-processed-gene-0.3 ID=snap_masked-scaffold148_size310697-processed-gene-0.3|Name=nuclear receptor|organism=Tigriopus kingsejongensis|type=gene|length=3312bp|location=Sequence derived from alignment at scaffold148_size310697:53640..56951+ (Tigriopus kingsejongensis)
ATGGACTTTGCTATGGATTCCATAGAGTTGGAAGCACTTCTGGAGGAAGT
CTTGAGCCATCCAGAAGAAACGCCCGTGAATACTTTTGAACTAGAATCCT
TTCTGAACTCGGATATCCTGAACGAGGCTCCATCATCCAGGACCAATGGC
TTTAGTGGGCCGGAGGAACCTTCGACGGGCCTTAGTACCTTTCAAGAGAG
ACTGACGCCCCCATATGGGACTCGCCTCAACGATGATGGAACATCCTCTC
TCTTCGCTTTTAACTTGGACGATATCTTGCCTCAGTTAACGAATTCACTT
GAGGATCATCCAAGCAATCCCACCAGCCAAGTAGTTGCCTCTAGCCTTGG
CACGGTTTCAGCCACCGATAATTATTCGTCCTTTACGTCCAGACTCCCCA
AATCCAGTGATACAAACTTAGTGACTGCGGTGTCCAGGACTATTTGGCCG
GCCGATCTGGCCGCTGGTCTGGGCTTAAATGGCCATATGGCTAACGAGTC
TTCTTCTCTGTCCAGACCACCACCCATTCCTTCCTCCAGTCCCAACGAGC
CCAAGTTGACCTTAAACCTTGCTGCTGGCTCCTATTTCGAAGTTGTCGTT
GAAGCCAACCCCTCCCTGGATGCTTACCCAAAGCTTGGGACTCCAGAGAC
GTCTTCGAGGAGCAGATCCCCCTCCGAATCGATTTCAAATTCGTACTCTG
AAACCAGTGCCTCACCGAGCTCTGATCCATCCTACACTTGTCCCATATGC
GGAAATCCCGCTGGGAAACACTCGTACTACGGAGCCCAAGTCTGCTCTAG
TTGTCGGGCTTTCTTCCGGAGATCCATCCAGAAGTCGGCCCATGAAGAGT
TCATATGTCGAAGCGGGCAAAGCTGCCGGATCGACTCCAAGTCGTGGAAG
AGCTGCAAATTCTGCCGTTTCCAATCTTGCCTTGCGGTCGGAATGAACCC
GCAATGGGTGATGAACCAGGAAGAGCGAGGTAATCGCAATGCTAAACGCA
ATTATTTACAAAACCTTCGCCAGAAGCAGCCGATGATGGGCGCTCAATCC
AGGACAGTGCTCAGCAAGCCACGAATCGATATTGTTGTGAGGTGGACATC
GGATGAGGAATGCCAAATCCGGGGCTTGAAAGATCTCTTCAGTGATTATG
CCACGAAAGTGATAGCCAACTTTCACTCTGAGAATCCACGCATGCTCCAA
CAATTCGTTGACAATCTCAATAAAGGAACTTCCATCAACTTGAAAGAGTA
TGTCTTTGCGGACCACTTCATAAGAAGCCAAGTGGTCAACTTCTACGACA
ACTTGTCCGACTTTCAAGAGATCCCCGTTTCAGATCGGAGGCAGCTGTTT
GCCTTCAATTTCCCCTTAAATGCTCATCTAATGGAAGCTTTAGTGTATCA
CCATCCTAAGGAATCGCGAAGAAACATTCAGGATTTCATGACACGGCTTC
AAACATTTACCGATCAAGATGAATCCCTAGAAGAGGTGAACCAAATGATG
AGTACAGTTATACTCGACGACAACGTACAAGATAAGATTGACAGACTGCA
CGACACCCACATTTACTCCGAGGACTCGAAGCAAAAGCGGGTGGAACTGT
CCAACGCCATTCAGCAATGGCCCAAAACCTCTCCCAATGGGTTGGCCGAT
GAAGTTCTGACCACTTTGTTGGGCTTGATTATCATTCTGTCCCCGGACTT
CTTAAACCTCAAGGATGCTACCAGAGTGAGTCAGGCTCAAACCAAGTACT
CGGTTATGCTTCATCGCTACTTGAAAGCCAAGCTTCCTACAAAGGCGCAT
GCCAAATTCGGCCAAGGGATCGAGCTCATCTCTAAGCTGAGAGAGTTGAC
CACAATTCTGTGCACTGACCTCAACACTCGCATGGAACGTATGCTTTGAA
TAAAAAGATCTCGGTGGATATGACAATTCAATTGGGTTCTGTTTATTTTT
TTCCGGCCTAATTCTGGAATTCTGCCACCGTAGGAACACTAGGTCTGAGC
GTGGAAATCATGGTTTACCCGATATTAGACCTGTATAATATCTTAATTTT
GACTTGGAAACAATGTTATTCCACAAACAAATATTGATTTCGAGATTAAA
ATCACACACTTTTTTTTAATCAAAACTTCACAATCAGTAATATAAGCGTG
ATTTCTCTCTCTATCTATTAACATCACTAAGTCATAGATGGACTTTTACT
GAAGAAACACTTTTTGTTTGCTCGTTCCGAGACAAAAGTGGGTGAAAATG
TCTTAACGACTGTAATTCTGTTCCCCGCTTGTCCCTTCTTTCACTTTTTT
TTACTGGCCCGCCCCTGGCGGTGATAATGTAGGCTAAAGCAGAGCCCCAT
TGCTATTGATCAATCTGCTGTACATAGTCGAATCTGGTTTTATTTGGCAA
AGTTTTGAGTAAGGGAACATTATGTGGCAAATTTAAACCTGCCACCTTTG
GTTCAAAGTTTTCAAGACCCTTCTTCATTAGTTGAGTTTTTAAGAAGCCA
ACATATCGAAGCTTGAAATTTGTTGATATTGACATTTGAAAACAACAACT
CGATAAGAATATATCTCATGGCTCTAGATGTACTTACAGTATATGTCTAA
TATACGGTCTGAGTAAAGTGATGTCGGGCGGTGAGCTTAAAGCACAGAAC
GAAGTACTGTAAGCTCCTGCCCCGGTATCATTTTTGAATTTACCGCCATA
CGTTTTCTGAGCCCATCAAACCTCTGTCGATGGAATTCCCGAACTACACA
TAAGGAGGGTGGGGGCAACAATTATAAAGTCAGGACTCGATTCACTATTT
CAATACTGGCCTCATCAAGCTGAAAGTTTCCCACAGTGTGTACATGACAT
TTATAGACTTTATTCTTCAATACGCCCTCGAAAGGTCGTGTAAAAATAGG
CTAAAGGTGCTTCCGGATCCGAGGCTGTCCGGATAGACCGACCGAACGAA
GCGGATCTGACTCTTTTGGGACACAATTTGCCCTTGGCCTTGATCACGCT
CACGGAACCGAGACAAAACAATCTGGTCTGCGACCTTTCTTGTTCGGAAA
ATCGTCACTCATTTCATTGAAGTTGAGGAGTTATCTTGAATTCATCCTTT
GGATTGCTTGGAATTGTTGGAACAAAGTGGTTTGAGTGCTTTCACGTTTT
TTCTATGTGAATGGCAGTCAAAGCTTAAAAAACTGCGACCGAGTCCTTTC
GCGTATAGTGTTCCCATGGAGAATCTGAGTATTGAGGTTGTGTGTGTCCA
CAATTGCCATGAATGCCTCCACATTTGGTCTCTCCCCATTTGTTTCACTT
ATAGGGCCATAG

Synonyms

The feature 'nuclear receptor' has the following synonyms


Synonym
Tk10297

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