exosome complex component rrp46, snap_masked-scaffold18_size714446-processed-gene-6.27 (gene) Tigriopus kingsejongensis

Overview
Nameexosome complex component rrp46
Unique Namesnap_masked-scaffold18_size714446-processed-gene-6.27
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
BLAST of exosome complex component rrp46 vs. L. salmonis genes
Match: EMLSAG00000011663 (supercontig:LSalAtl2s:LSalAtl2s80:819418:829604:1 gene:EMLSAG00000011663 transcript:EMLSAT00000011663 description:"maker-LSalAtl2s80-augustus-gene-8.35")

HSP 1 Score: 94.3597 bits (233), Expect = 1.468e-22
Identity = 66/210 (31.43%), Postives = 114/210 (54.29%), Query Frame = 0
Query:    4 NQLRPVWAQLGLLGHTDGSVMLSMGRSAVMCGVYGPAEVK-PHKEKLEGATV-EVQWRPPTGASGLAERALESVLRGLVSSSVLTSLHPRTCVHVSLQPLDRDGGELASAVNAACLALIDASVAMRCLFAAVQVARDP-AGRLLVDPCRKQLRTATASATFVFESVQSDVLATHLE-GRWPEQAFQEGLQLASAGAQHLFQFYRDTVQRK 209
            N +  ++A+ G+L   DGS  LS G +     V GP E +   K++L   TV ++ +R  T     A + L +    L S  + T  +PRT   + LQ  + DG   A+++NA  LAL+D+ +A++ L AAV +A +  +G  ++DP + + + A A   FVFES    ++++ L+ G+   + F + L++A   +  +F FYR  V++K
Sbjct:   21 NLINDLFAESGILSAYDGSASLSQGGTLSYAAVSGPGEPRLSTKDRLYDQTVVDIYYR--THERDFASKNLGTFSECLKSGLIPTD-YPRTGTALYLQQGEDDGSYSATSLNAGMLALMDSGIALQFLTAAVNIAYNSESGSFILDPDKLESQNAQALILFVFESRSRQMISSSLQKGKVSLKVFNKALKMAREASASIFDFYRKAVEKK 227          
BLAST of exosome complex component rrp46 vs. L. salmonis genes
Match: EMLSAG00000003990 (supercontig:LSalAtl2s:LSalAtl2s213:385505:387237:1 gene:EMLSAG00000003990 transcript:EMLSAT00000003990 description:"maker-LSalAtl2s213-augustus-gene-3.21")

HSP 1 Score: 69.707 bits (169), Expect = 1.181e-14
Identity = 45/160 (28.12%), Postives = 86/160 (53.75%), Query Frame = 0
Query:    1 MSENQLRPVWAQLGLLGHTDGSVMLSMGRSAVMCGVYGPAEVKPHKEKLEGAT----VEVQWRPPTGAS-----GLAERALESVLRGLVSSSVLTSLHPRTCVHVSLQPLDRDGGELASAVNAACLALIDASVAMRCLFAAVQVARDPAGRLLVDPCRKQ 151
            + ++ +R ++ ++G+L    GS  +  G++ V+  V+GP E++   +KL+ ++    + V+++    AS        E+ +   L   + S+V   L+P++ + V +  L+ DG  +A+A+ AA LAL DAS+ +  L     V R    R  VDPC+K+
Sbjct:   42 LKDSSVRSLFCEVGVLTKCKGSAYIERGQTKVIASVFGPREIQ---KKLDFSSTTGILSVEYKETAFASRDTSDNSNEKNISLFLAETLRSTVCLHLYPKSKIDVFITVLENDGSAVATAITAASLALSDASINLFDLAIGSSV-RLHKKRAFVDPCKKE 197          
BLAST of exosome complex component rrp46 vs. L. salmonis genes
Match: EMLSAG00000003429 (supercontig:LSalAtl2s:LSalAtl2s188:531000:531937:-1 gene:EMLSAG00000003429 transcript:EMLSAT00000003429 description:"maker-LSalAtl2s188-augustus-gene-5.17")

HSP 1 Score: 57.3806 bits (137), Expect = 2.235e-10
Identity = 53/178 (29.78%), Postives = 80/178 (44.94%), Query Frame = 0
Query:    4 NQLRPVWAQLGLLG-HTDGSVMLSMGRSAVMCGVYGPAEVKP-HKEKLEGATVEVQWRPPTGASGLAERALESVLRGLVSSSVLTSLHPRTCVHVSLQPLDRDGGELASAVNAACLALIDASVAMR---CLFAAVQVARDPAGRLLVDPCRKQLRTATASATFVFESVQSDVLATHLE 176
            ++LR +  +LG      DGS  L MG S V+  VYGP E +       E A + VQ+   + A   AER             + T L+PR+ + + ++ L  D G   ++VNAA LALI A + +R   C  +A  +   P    LVD    +L ++      +  S+       HLE
Sbjct:   17 DELRRLRCRLGAFSWSADGSAYLEMGNSKVLAAVYGPREPRGVDNSSKEEAILNVQF--SSAAFSTAERKERQ-------PCIQTELYPRSQIDIFVEVLQTDCGHYCASVNAATLALIHAGIPLRDYVCACSASLIKETP----LVDI--NKLESSLGGPELILASLPKSGEIVHLE 179          
BLAST of exosome complex component rrp46 vs. SwissProt
Match: gi|14285757|sp|Q9NQT4.1|EXOS5_HUMAN (RecName: Full=Exosome complex component RRP46; AltName: Full=Chronic myelogenous leukemia tumor antigen 28; AltName: Full=Exosome component 5; AltName: Full=Ribosomal RNA-processing protein 46; AltName: Full=p12B)

HSP 1 Score: 158.303 bits (399), Expect = 3.392e-47
Identity = 90/207 (43.48%), Postives = 125/207 (60.39%), Query Frame = 0
Query:    6 LRPVWAQLGLLGHTDGSVMLSMGRSAVMCGVYGPAEVKPHKEKLEGATVEVQWRPPTGASGLAERALESVLRGLVSSSVLTSLHPRTCVHVSLQPLDRDGGELASAVNAACLALIDASVAMRCLFAAVQVARDPAGRLLVDPCRKQLRTATASATFVFESVQSDVLATHLEGRWPEQAFQEGLQLASAGAQHLFQFYRDTVQRKYSK 212
            LR    +  LL   DGS     G ++V+ GVYGPAEVK  KE    AT+EV  RP  G  G+AE++ E ++R    + VL +LHPRT + V LQ +   G  LA  +NAAC+AL+DA V MR LF  V  A D  G L++DP  KQ + A A  TF  +SV+  +L +  +G + +   Q+ L  A A +QH+F+FYR+++QR+YSK
Sbjct:   28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVACALDSDGTLVLDPTSKQEKEARAVLTFALDSVERKLLMSSTKGLYSDTELQQCLAAAQAASQHVFRFYRESLQRRYSK 234          
BLAST of exosome complex component rrp46 vs. SwissProt
Match: gi|21759413|sp|Q9CRA8.1|EXOS5_MOUSE (RecName: Full=Exosome complex component RRP46; AltName: Full=Exosome component 5; AltName: Full=Ribosomal RNA-processing protein 46)

HSP 1 Score: 157.147 bits (396), Expect = 1.045e-46
Identity = 89/207 (43.00%), Postives = 124/207 (59.90%), Query Frame = 0
Query:    6 LRPVWAQLGLLGHTDGSVMLSMGRSAVMCGVYGPAEVKPHKEKLEGATVEVQWRPPTGASGLAERALESVLRGLVSSSVLTSLHPRTCVHVSLQPLDRDGGELASAVNAACLALIDASVAMRCLFAAVQVARDPAGRLLVDPCRKQLRTATASATFVFESVQSDVLATHLEGRWPEQAFQEGLQLASAGAQHLFQFYRDTVQRKYSK 212
            LR    +  LL   DGS     G ++V+ GVYGPAEVK  KE    AT+EV  RP  G  G+AE++ E ++R    + VL +LHPRT + V LQ +   G  LA  +NAAC+AL+DA V MR LF  V  A D  G L++DP  KQ + A A  TF  +S +  +L +  +G + +   Q+ L  A A +QH+F+FYR+++QR+YSK
Sbjct:   28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLPGVAEKSRERLVRNTCEAVVLGALHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVTCALDSDGNLVLDPTTKQEKEARAILTFALDSAEQKLLMSTTKGLYSDAELQQCLAAAQAASQHIFRFYRESLQRRYSK 234          
BLAST of exosome complex component rrp46 vs. SwissProt
Match: gi|75180792|sp|Q9LX74.1|EXOS5_ARATH (RecName: Full=Exosome complex exonuclease RRP46 homolog; AltName: Full=Exosome component 5; AltName: Full=Ribosomal RNA-processing protein 46)

HSP 1 Score: 102.064 bits (253), Expect = 1.786e-25
Identity = 66/226 (29.20%), Postives = 101/226 (44.69%), Query Frame = 0
Query:    4 NQLRPVWAQLGLLGHTDGSVMLSMGRSAVMCGVYGPAEVKPHKEKLEGATVEVQWRPPTGASGLAERALESVLRGLVSSSVLTSLHPRTCVHVSLQPLDRDGGELASAVNAACLALIDASVAMRCLFAAVQVARDPAGRLLVDPCRKQLRTATASATFVF-----------------ESVQSDVLATHLEGRWPEQAFQEGLQLASAGAQHLFQFYRDTVQRKYSK 212
            NQLRP+     +L    GS   S G + V+  VYGP       E  E A  EV W+P +G  G  E+  E +L+  + S  + +++P T   V +Q +  DG  L  A+NAAC AL+DA + M+ L  A+       G L++DP + + +  TA A  VF                 E V+  ++ +   G      +   ++   A    L  F+R   Q+  SK
Sbjct:   12 NQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEKACFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAINAACAALVDAGIPMKHLAVAICCCLAENGYLVLDPNKLEEKKMTAFAYLVFPNTTLSVLPEGSSVAEGEPVEHGIITSITHGVMSVDDYFLCVENGRAATASLSAFFRKNFQQSSSK 237          
BLAST of exosome complex component rrp46 vs. SwissProt
Match: gi|29336822|sp|Q8U0L9.1|RRP41_PYRFU (RecName: Full=Exosome complex component Rrp41)

HSP 1 Score: 102.064 bits (253), Expect = 2.229e-25
Identity = 58/217 (26.73%), Postives = 114/217 (52.53%), Query Frame = 0
Query:    5 QLRPVWAQLGLLGHTDGSVMLSMGRSAVMCGVYGPAEVKP-HKEKLEGATVEVQWR------PPTGASGLAERALE--SVLRGLVSSSVLTSLHPRTCVHVSLQPLDRDGGELASAVNAACLALIDASVAMRCLFAAVQVARDPAGRLLVDPCRKQLRTATASATFVFESVQSDVLATHLEGRWPEQAFQEGLQLASAGAQHLFQFYRDTVQRKYSK 212
            +LRP+  ++G+L + +GS  +  G++ ++  VYGP E+ P H ++ + A + V++             G   R++E   V+RG +  +++  + PRT + V ++ L  D G   + + AA LAL DA + MR L AA    +   G +++D  +++     A        +++D+    ++G   ++ F E ++LA  GA+ ++Q  R+ ++ KY K
Sbjct:   25 ELRPIKMKVGVLKNANGSAYIEWGKNKIIAAVYGPREIHPKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIRGALEPALILEMFPRTAIDVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACSAGK-IEGEIVLDLNKEEDNYGEADVPVAIMPIKNDITLLQMDGYLTKEEFIEAVKLAIKGAKAVYQKQREALKEKYLK 240          
BLAST of exosome complex component rrp46 vs. SwissProt
Match: gi|254782534|sp|A2BKC0.1|RRP41_HYPBU (RecName: Full=Exosome complex component Rrp41)

HSP 1 Score: 100.523 bits (249), Expect = 1.147e-24
Identity = 67/217 (30.88%), Postives = 104/217 (47.93%), Query Frame = 0
Query:    4 NQLRPVWAQLGLLGHTDGSVMLSMGRSAVMCGVYGPAEVKPHKEKLEGATVEVQWRPPTGASGLAERA----------LESVLRGLVSSSVLTSLHPRTCVHVSLQPLDRDGGELASAVNAACLALIDASVAMRCLFAAVQVARDPAGRLLVDPCRKQLRTATASATFVFESVQSDVLATHLEGRWPEQAFQEGLQLASAGAQHLFQFYRDTVQRKY 210
             QLRP+  ++G+L + DGS ++  G + V+  VYGP E  P    L    + ++ R        AER           L  V+R  + + V++ L+PRT + V ++ L  DGG   +A+ AA LAL DA +AMR L A V V +   G L++D    +   A A            VL   L G      F + L+LA  G Q ++   ++ +++KY
Sbjct:   32 EQLRPIRMEVGVLSNADGSALVEYGGTRVIAAVYGPREAHPRHVALPDRAI-IRCRYHMAPFSTAERKTPAPTRREVELSKVIREALEAVVISELYPRTAIDVYMEVLQSDGGTRTAAITAASLALADAGIAMRDLVAGVAVGK-VDGVLVLDIDEIEDNYAEADMPVAMAPSLDKVLLLQLNGVLTHDEFVKALELARKGIQVIYNLQKEALRKKY 246          
BLAST of exosome complex component rrp46 vs. SwissProt
Match: gi|73919276|sp|Q5JIR6.1|RRP41_THEKO (RecName: Full=Exosome complex component Rrp41)

HSP 1 Score: 100.138 bits (248), Expect = 1.228e-24
Identity = 60/217 (27.65%), Postives = 113/217 (52.07%), Query Frame = 0
Query:    5 QLRPVWAQLGLLGHTDGSVMLSMGRSAVMCGVYGPAEVKP-HKEKLEGATVEVQWR------PPTGASGLAERALE--SVLRGLVSSSVLTSLHPRTCVHVSLQPLDRDGGELASAVNAACLALIDASVAMRCLFAAVQVARDPAGRLLVDPCRKQLRTATASATFVFESVQSDVLATHLEGRWPEQAFQEGLQLASAGAQHLFQFYRDTVQRKYSK 212
            +LRP+  ++G+L + DGS  +  G++ V+  VYGP E+ P H ++ + A + V++             G   R++E   V+RG +  ++L  + PRT + V ++ L  D G   + + AA LAL DA + M+ L AA    +   G +++D  +++     A        +++D+    ++G   +  F E ++LA  GA+ ++Q  R+ ++ KY K
Sbjct:   25 ELRPIKMEVGVLKNADGSAYVEWGKNKVLAAVYGPREIHPKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSVEISKVIRGALEPALLLHMFPRTAIDVFIEILQADAGTRVAGITAASLALADAGIPMKDLVAACAAGK-IDGEIVLDLNKEEDNYGEADVPVAIMPLKNDITLLQMDGYLTKDEFLEAVRLAIKGAKAVYQKQREALKEKYLK 240          
BLAST of exosome complex component rrp46 vs. SwissProt
Match: gi|226740341|sp|B6YSI2.1|RRP41_THEON (RecName: Full=Exosome complex component Rrp41)

HSP 1 Score: 100.138 bits (248), Expect = 1.423e-24
Identity = 58/217 (26.73%), Postives = 112/217 (51.61%), Query Frame = 0
Query:    5 QLRPVWAQLGLLGHTDGSVMLSMGRSAVMCGVYGPAEVKP-HKEKLEGATVEVQWR------PPTGASGLAERALE--SVLRGLVSSSVLTSLHPRTCVHVSLQPLDRDGGELASAVNAACLALIDASVAMRCLFAAVQVARDPAGRLLVDPCRKQLRTATASATFVFESVQSDVLATHLEGRWPEQAFQEGLQLASAGAQHLFQFYRDTVQRKYSK 212
            +LRP+  ++G+L + DGS  +  G++ ++  VYGP E+ P H ++ + A + V++             G   R++E   V+RG +  +++  + PRT + + ++ L  D G   + + AA LAL DA + MR L AA    +   G +++D  +++     A        +++D+    ++G      F E ++LA  GA+ ++Q  R+ ++ KY K
Sbjct:   25 ELRPIKMEVGVLKNADGSAYVEWGKNKILAAVYGPREIHPKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSVEISKVIRGALEPALILEMFPRTAIDIFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGK-IEGEIVLDLNKEEDNYGEADVPVAIMPLKNDITLLQMDGYLTRDEFIEAVRLAIKGAKAVYQKQREALKEKYLK 240          
BLAST of exosome complex component rrp46 vs. SwissProt
Match: gi|259645401|sp|C5A2B9.1|RRP41_THEGJ (RecName: Full=Exosome complex component Rrp41)

HSP 1 Score: 99.7525 bits (247), Expect = 2.191e-24
Identity = 60/217 (27.65%), Postives = 112/217 (51.61%), Query Frame = 0
Query:    5 QLRPVWAQLGLLGHTDGSVMLSMGRSAVMCGVYGPAEVKP-HKEKLEGATVEVQWR------PPTGASGLAERALE--SVLRGLVSSSVLTSLHPRTCVHVSLQPLDRDGGELASAVNAACLALIDASVAMRCLFAAVQVARDPAGRLLVDPCRKQLRTATASATFVFESVQSDVLATHLEGRWPEQAFQEGLQLASAGAQHLFQFYRDTVQRKYSK 212
            +LR +  ++G+L + DGS  +  G++ ++  VYGP E+ P H ++ + A + V++             G   R++E   V+RG +  +++  + PRT V V ++ L  D G   + + AA LAL DA V MR L AA    +   G +++D  + +     A        +++D+    ++G   ++ F E ++LA  GA+ ++Q  R+ ++ KY K
Sbjct:   25 ELRKIHMEVGVLKNADGSAYIEWGKNKILAAVYGPREIHPKHLQRPDTAVLRVRYNMAPFSVEERKKPGPDRRSVEISKVIRGALEPALILEMFPRTVVDVFIEVLQADAGTRVAGITAASLALADAGVPMRDLVAACAAGK-IDGEIVLDLNKDEDNYGEADVPVAIMPLKNDITLLQMDGYLTKEEFIEAVKLAIKGAKAVYQKQREALKEKYLK 240          
BLAST of exosome complex component rrp46 vs. SwissProt
Match: gi|29337010|sp|Q9V119.1|RRP41_PYRAB (RecName: Full=Exosome complex component Rrp41)

HSP 1 Score: 98.2117 bits (243), Expect = 8.150e-24
Identity = 57/217 (26.27%), Postives = 113/217 (52.07%), Query Frame = 0
Query:    5 QLRPVWAQLGLLGHTDGSVMLSMGRSAVMCGVYGPAEVKP-HKEKLEGATVEVQWR------PPTGASGLAERALE--SVLRGLVSSSVLTSLHPRTCVHVSLQPLDRDGGELASAVNAACLALIDASVAMRCLFAAVQVARDPAGRLLVDPCRKQLRTATASATFVFESVQSDVLATHLEGRWPEQAFQEGLQLASAGAQHLFQFYRDTVQRKYSK 212
            +LRP+  ++G+L + +GS  +  G++ ++  VYGP E+ P H ++ + A + V++             G   R++E   V++G +  +++  + PRT + V ++ L  D G   + + AA LAL DA + MR L AA    +   G +++D  +++     A        +++D+    ++G   +  F E ++LA  GA+ ++Q  R+ ++ KY K
Sbjct:   25 ELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGK-IEGEIVLDLNKEEDNYGEADVPVAIMPLKNDITLLQMDGYLTKDEFIEAVKLAIKGAKAVYQKQREALKEKYLK 240          
BLAST of exosome complex component rrp46 vs. SwissProt
Match: gi|29336576|sp|O29757.1|RRP41_ARCFU (RecName: Full=Exosome complex component Rrp41)

HSP 1 Score: 97.4413 bits (241), Expect = 1.591e-23
Identity = 60/225 (26.67%), Postives = 113/225 (50.22%), Query Frame = 0
Query:    4 NQLRPVWAQLGLLGHTDGSVMLSMGRSAVMCGVYGPAEVKP------------HKEKLEGATVEVQWRPPTGASGLAERALE--SVLRGLVSSSVLTSLHPRTCVHVSLQPLDRDGGELASAVNAACLALIDASVAMRCLFAAVQVARDPAGRLLVDPCRKQLRTATASATFVF----ESVQSDVLATHLEGRWPEQAFQEGLQLASAGAQHLFQFYRDTVQRKY 210
            ++LRP+  +  +L   DGS  L MG++ V+  V+GP EV P            ++  +   +VE + RP     G   R++E   V +    + ++  L PR+ + + ++ L  D G   + +NAA +AL+DA V M+ +  +V V +   G+L++DP +++     A   F F      ++S  L   ++GR      ++ ++LA  GA  +++  R+ + R+Y
Sbjct:   24 DELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGPREVHPRHLQDPSKAIIRYRYNMAPFSVEERKRP-----GPDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVEVLQADAGSRTACLNAASVALVDAGVPMKGMITSVAVGK-ADGQLVLDPMKEEDNFGEADMPFAFLIRNGKIESIAL-LQMDGRMTRDEVKQAIELAKKGALQIYEMQREAILRRY 241          
BLAST of exosome complex component rrp46 vs. nr
Match: gi|1339049462|ref|XP_023712969.1| (exosome complex component RRP46 [Cryptotermes secundus])

HSP 1 Score: 183.341 bits (464), Expect = 1.243e-54
Identity = 85/206 (41.26%), Postives = 135/206 (65.53%), Query Frame = 0
Query:    3 ENQLRPVWAQLGLLGHTDGSVMLSMGRSAVMCGVYGPAEVKPHKEKLEGATVEVQWRPPTGASGLAERALESVLRGLVSSSVLTSLHPRTCVHVSLQPLDRDGGELASAVNAACLALIDASVAMRCLFAAVQVARDPAGRLLVDPCRKQLRTATASATFVFESVQSDVLATHLEGRWPEQAFQEGLQLASAGAQHLFQFYRDTVQR 208
            E+ LRP+  QL +L  +DGS M + G +AV+  V+GPAEVKP +  ++ A+VE  +RP TG   + ++  E+++R   S+++L +LHPRT + + +Q +   GG LA AVNAACLALI++ +AM+ L AAV    D    +L+DP  KQL+ + AS TFVF+S++ +++A H  GR+ +  ++E L     G+  +F FYR+ V++
Sbjct:   10 EDCLRPMNCQLNVLSRSDGSAMFTQGDTAVVTAVFGPAEVKPQRILIDKASVEALYRPKTGLPRVHDKMRETLIRNTCSTALLVTLHPRTSISIIVQEMQDSGGLLACAVNAACLALINSGIAMKFLVAAVSCMIDHEDNILIDPNSKQLKGSKASLTFVFDSIKKNIMACHTTGRFTQLQYEESLLKCRNGSDKIFSFYREIVRK 215          
BLAST of exosome complex component rrp46 vs. nr
Match: gi|926624123|ref|XP_013777505.1| (exosome complex component RRP46-like [Limulus polyphemus])

HSP 1 Score: 174.866 bits (442), Expect = 2.535e-51
Identity = 79/209 (37.80%), Postives = 132/209 (63.16%), Query Frame = 0
Query:    6 LRPVWAQLGLLGHTDGSVMLSMGRSAVMCGVYGPAEVKPHKEKLEGATVEVQWRPPTGASGLAERALESVLRGLVSSSVLTSLHPRTCVHVSLQPLDRDGGELASAVNAACLALIDASVAMRCLFAAVQVARDPAGRLLVDPCRKQLRTATASATFVFESVQSDVLATHLEGRWPEQAFQEGLQLASAGAQHLFQFYRDTVQRKYSKDL 214
            +R + A+L  L   DGS +++ G + V   VYGP EV+P+KE  + A  ++ ++P TG  G  E+  E V+R  + +++L +LHPR  +++ LQ +  DGG LA  +N+AC+AL+DA +AM+CL AA+       G +L+DP  KQ   A A  TF FES+  +V+ ++ +G + E  F++ L++  + +  +F FYR+ VQR++SK++
Sbjct:   13 IRTLSAELSNLSRPDGSAIVAQGDTVVQSAVYGPVEVRPNKELPDKAYFDIVYKPLTGLPGCPEKLRERVIRNTLEATLLVNLHPRKSINLILQEMQNDGGLLACCINSACMALMDAGLAMKCLVAALNAVITTEGDVLLDPSLKQEEEAKACFTFAFESINHEVITSNTQGSYSETEFKKCLEICRSASMKVFDFYRECVQRRFSKEI 221          
BLAST of exosome complex component rrp46 vs. nr
Match: gi|1227966439|ref|XP_021914573.1| (exosome complex component RRP46 [Zootermopsis nevadensis])

HSP 1 Score: 174.096 bits (440), Expect = 3.763e-51
Identity = 82/210 (39.05%), Postives = 131/210 (62.38%), Query Frame = 0
Query:    3 ENQLRPVWAQLGLLGHTDGSVMLSMGRSAVMCGVYGPAEVKPHKEKLEGATVEVQWRPPTGASGLAERALESVLRGLVSSSVLTSLHPRTCVHVSLQPLDRDGGELASAVNAACLALIDASVAMRCLFAAVQVARDPAGRLLVDPCRKQLRTATASATFVFESVQSDVLATHLEGRWPEQAFQEGLQLASAGAQHLFQFYRDTVQRKYSK 212
            E ++RP+  +L +L  +DGS + + G +AV+  V+GP EVKP +  ++ A VE  +RP +G   + +R  ES+LR    +S+L +LHPRT + + +Q +   GG LA AVN+ACLAL+ + +AM+ L AAV        +LL+DP  KQL+ + AS TFVF+SV+ + +A+H  G + +  +QE L      + ++F  YRD V++  S+
Sbjct:    7 EQRIRPMNCELKVLSRSDGSAIFTQGDTAVVTAVFGPVEVKPQRILIDKACVEALYRPKSGLPCVHDRMHESLLRNTCETSLLATLHPRTSISIIIQEMQDSGGLLACAVNSACLALMSSGIAMKFLVAAVSCMISQEDKLLIDPTNKQLKDSKASLTFVFDSVKKNTVASHTTGSFTQIQYQESLMKCRNASDNIFSLYRDMVKKYASR 216          
BLAST of exosome complex component rrp46 vs. nr
Match: gi|971445889|ref|XP_015127981.1| (PREDICTED: exosome complex component RRP46 [Gallus gallus])

HSP 1 Score: 172.555 bits (436), Expect = 1.554e-50
Identity = 95/207 (45.89%), Postives = 121/207 (58.45%), Query Frame = 0
Query:    6 LRPVWAQLGLLGHTDGSVMLSMGRSAVMCGVYGPAEVKPHKEKLEGATVEVQWRPPTGASGLAERALESVLRGLVSSSVLTSLHPRTCVHVSLQPLDRDGGELASAVNAACLALIDASVAMRCLFAAVQVARDPAGRLLVDPCRKQLRTATASATFVFESVQSDVLATHLEGRWPEQAFQEGLQLASAGAQHLFQFYRDTVQRKYSK 212
            LRP   + GLL   DGS     G ++V+ G+YGPAEVK  +E  +GATVEV  RP  G  G+AER+ E +LR    + +L SLHPRT + V LQ L   G  LA  +NAAC+ L+DA + +  LF  V  A DP G +++DP  +Q + A A  TF  +S Q  VLAT   G    +  Q  L  A   A  +FQFYRD VQRKYSK
Sbjct:   12 LRPFSCEQGLLSRPDGSATFVQGDTSVLAGLYGPAEVKGSRESPDGATVEVLLRPKVGLPGVAERSREQLLRRTFEAVLLGSLHPRTSITVVLQVLSDAGSLLACCLNAACMGLLDAGLPLSSLFCGVTCALDPHGDIILDPTARQEQEAHAVLTFAIDSAQRKVLATTTRGSCSAEEMQRCLVAAQRAADTIFQFYRDCVQRKYSK 218          
BLAST of exosome complex component rrp46 vs. nr
Match: gi|744580027|ref|XP_010983543.1| (PREDICTED: exosome complex component RRP46 [Camelus dromedarius])

HSP 1 Score: 171.4 bits (433), Expect = 6.500e-50
Identity = 90/207 (43.48%), Postives = 125/207 (60.39%), Query Frame = 0
Query:    6 LRPVWAQLGLLGHTDGSVMLSMGRSAVMCGVYGPAEVKPHKEKLEGATVEVQWRPPTGASGLAERALESVLRGLVSSSVLTSLHPRTCVHVSLQPLDRDGGELASAVNAACLALIDASVAMRCLFAAVQVARDPAGRLLVDPCRKQLRTATASATFVFESVQSDVLATHLEGRWPEQAFQEGLQLASAGAQHLFQFYRDTVQRKYSK 212
            LR    +  LL   DGS     G ++V+ GVYGPAEVK  KE    AT+EV  RP TG  G+AE++ E ++R    + VL +LHPRT + V LQ +   G  LA  +NAAC+AL+DA V MR LF  V  A D  G L++DP  KQ + A A  TF  +SV+  +L +  +G + +   Q+ L  A   +QH+F+FYR+++QR+YSK
Sbjct:   28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKTGLPGVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVTCALDSGGTLMLDPTAKQEKEARAVLTFALDSVERKLLMSTTKGLYSDAELQQCLAAAQTASQHVFRFYRESLQRRYSK 234          
BLAST of exosome complex component rrp46 vs. nr
Match: gi|560927422|ref|XP_006189877.1| (PREDICTED: exosome complex component RRP46 [Camelus ferus] >gi|743704637|ref|XP_010945600.1| PREDICTED: exosome complex component RRP46 [Camelus bactrianus])

HSP 1 Score: 171.4 bits (433), Expect = 8.903e-50
Identity = 90/207 (43.48%), Postives = 125/207 (60.39%), Query Frame = 0
Query:    6 LRPVWAQLGLLGHTDGSVMLSMGRSAVMCGVYGPAEVKPHKEKLEGATVEVQWRPPTGASGLAERALESVLRGLVSSSVLTSLHPRTCVHVSLQPLDRDGGELASAVNAACLALIDASVAMRCLFAAVQVARDPAGRLLVDPCRKQLRTATASATFVFESVQSDVLATHLEGRWPEQAFQEGLQLASAGAQHLFQFYRDTVQRKYSK 212
            LR    +  LL   DGS     G ++V+ GVYGPAEVK  KE    AT+EV  RP TG  G+AE++ E ++R    + VL +LHPRT + V LQ +   G  LA  +NAAC+AL+DA V MR LF  V  A D  G L++DP  KQ + A A  TF  +SV+  +L +  +G + +   Q+ L  A   +QH+F+FYR+++QR+YSK
Sbjct:   28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKTGLPGVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVTCALDSGGTLMLDPTAKQEKEARAVLTFALDSVERKLLMSTTKGLYSDAELQQCLAAAQTASQHVFRFYRESLQRRYSK 234          
BLAST of exosome complex component rrp46 vs. nr
Match: gi|321475274|gb|EFX86237.1| (hypothetical protein DAPPUDRAFT_193332 [Daphnia pulex])

HSP 1 Score: 170.629 bits (431), Expect = 8.952e-50
Identity = 81/213 (38.03%), Postives = 128/213 (60.09%), Query Frame = 0
Query:    3 ENQLRPVWAQLGLLGHTDGSVMLSMGRSAVMCGVYGPAEVKPHKEKLEGATVEVQWRPPTGASGLAERALESVLRGLVSSSVLTSLHPRTCVHVSLQPLDRDGGELASAVNAACLALIDASVAMRCLFAAVQVARDPAGRLLVDPCRKQLRTA-TASATFVFESVQSDVLATHLEGRWPEQAFQEGLQLASAGAQHLFQFYRDTVQRKYSKDL 214
            EN +R +  +  +L   DGSVM S G + VM  VYGP E K  KE  +   +E+ ++P TG  G+AER  E +++   +  +LT+LHPRT V +++Q +   G  LA+++NA CLAL+D+ + ++CL AAV    D   R+++DPC   ++    A  TF F+S + +++ +H EG+ P Q FQ+ + L    +  +F FYR  V RK+S +L
Sbjct:    5 ENSIRALKCEQSVLSRADGSVMFSQGNTVVMASVYGPLEAKIQKELSDRMYIELNYKPKTGMPGVAERGKEKLIKTTCNHIILTNLHPRTAVCITVQEMQDGGTLLAASINAVCLALLDSGLPLQCLVAAVTCLVDKKDRIILDPCISTVKEGYKAMFTFAFDSQKYNLILSHCEGQVPYQLFQKAMVLCQKASHVIFDFYRQAVLRKFSNEL 217          
BLAST of exosome complex component rrp46 vs. nr
Match: gi|632989685|ref|XP_007883779.1| (PREDICTED: exosome complex component RRP46 [Callorhinchus milii])

HSP 1 Score: 170.629 bits (431), Expect = 1.103e-49
Identity = 86/211 (40.76%), Postives = 124/211 (58.77%), Query Frame = 0
Query:    6 LRPVWAQLGLLGHTDGSVMLSMGRSAVMCGVYGPAEVKPHKEKLEGATVEVQWRPPTGASGLAERALESVLRGLVSSSVLTSLHPRTCVHVSLQPLDRDGGELASAVNAACLALIDASVAMRCLFAAVQVARDPAGRLLVDPCRKQLRTATASATFVFESVQSDVLATHLEGRWPEQAFQEGLQLASAGAQHLFQFYRDTVQRKYSKDLAQ 216
            LRP   +  LL   DGS   + G + V+  VYGPAEVK  KE  + AT+EV  +P  G  G+AER+ E ++R    +++LT+LHPR+ + V LQ +   G  L+  +NAAC ALIDA + MR LF  +    D  G +L+DP  KQ +   A  TF  +SV   VL +  +G +  +  Q+ +     G++ +FQFYRD+V+RKYSK L +
Sbjct:   11 LRPFGCEYSLLSRPDGSACFTQGDTTVLAAVYGPAEVKVSKEIFDKATLEVLLKPKVGLPGVAERSKEQLIRNTCEATILTALHPRSSITVVLQVIHDAGSLLSCCLNAACTALIDAGLPMRSLFCGITCLIDSDGNILLDPTSKQEKEYRAVLTFSMDSVDKKVLLSSTKGSYSVEELQQCIATCQKGSEKVFQFYRDSVRRKYSKLLNE 221          
BLAST of exosome complex component rrp46 vs. nr
Match: gi|1326156068|ref|XP_023355788.1| (exosome complex component RRP46 [Sarcophilus harrisii])

HSP 1 Score: 170.629 bits (431), Expect = 1.144e-49
Identity = 89/207 (43.00%), Postives = 124/207 (59.90%), Query Frame = 0
Query:    6 LRPVWAQLGLLGHTDGSVMLSMGRSAVMCGVYGPAEVKPHKEKLEGATVEVQWRPPTGASGLAERALESVLRGLVSSSVLTSLHPRTCVHVSLQPLDRDGGELASAVNAACLALIDASVAMRCLFAAVQVARDPAGRLLVDPCRKQLRTATASATFVFESVQSDVLATHLEGRWPEQAFQEGLQLASAGAQHLFQFYRDTVQRKYSK 212
            LR    +  LL   DGS     G ++V+ GVYGPAEVK  KE    AT+EV  +P  G  G+AE++ E ++R    + VL +LHPRT + ++LQ +   G  LA  +NAACLAL+DA V MR LF  V  A DP G L++DP  KQ + A A  TF  +S +  +L +  +G +    FQ+ L  A   + H+F+FYRD++QR+YSK
Sbjct:   24 LRHFACEQNLLSRPDGSASFLQGDTSVLVGVYGPAEVKVSKEIFNKATLEVILKPKIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITIALQIVSDAGSLLACCLNAACLALVDAGVPMRALFCGVTCALDPDGALILDPTAKQEKEARAILTFALDSTEQKLLMSTTKGLYSVAEFQQCLAAAQHASHHIFRFYRDSLQRRYSK 230          
BLAST of exosome complex component rrp46 vs. nr
Match: gi|560985695|ref|XP_006215046.1| (PREDICTED: exosome complex component RRP46 [Vicugna pacos])

HSP 1 Score: 171.014 bits (432), Expect = 1.260e-49
Identity = 90/207 (43.48%), Postives = 125/207 (60.39%), Query Frame = 0
Query:    6 LRPVWAQLGLLGHTDGSVMLSMGRSAVMCGVYGPAEVKPHKEKLEGATVEVQWRPPTGASGLAERALESVLRGLVSSSVLTSLHPRTCVHVSLQPLDRDGGELASAVNAACLALIDASVAMRCLFAAVQVARDPAGRLLVDPCRKQLRTATASATFVFESVQSDVLATHLEGRWPEQAFQEGLQLASAGAQHLFQFYRDTVQRKYSK 212
            LR    +  LL   DGS     G ++V+ GVYGPAEVK  KE    AT+EV  RP TG  G+AE++ E ++R    + VL +LHPRT + V LQ +   G  LA  +NAAC+AL+DA V MR LF  V  A D  G L++DP  KQ + A A  TF  +SV+  +L +  +G + +   Q+ L  A   +QH+F+FYR+++QR+YSK
Sbjct:   28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKTGLPGVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVTCALDSDGTLMLDPTAKQEKEARAVLTFALDSVERKLLMSTTKGLYSDAELQQCLAAAQTASQHVFRFYRESLQRRYSK 234          
The following BLAST results are available for this feature:
BLAST of exosome complex component rrp46 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 3
Match NameE-valueIdentityDescription
EMLSAG000000116631.468e-2231.43supercontig:LSalAtl2s:LSalAtl2s80:819418:829604:1 ... [more]
EMLSAG000000039901.181e-1428.13supercontig:LSalAtl2s:LSalAtl2s213:385505:387237:1... [more]
EMLSAG000000034292.235e-1029.78supercontig:LSalAtl2s:LSalAtl2s188:531000:531937:-... [more]
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BLAST of exosome complex component rrp46 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
gi|14285757|sp|Q9NQT4.1|EXOS5_HUMAN3.392e-4743.48RecName: Full=Exosome complex component RRP46; Alt... [more]
gi|21759413|sp|Q9CRA8.1|EXOS5_MOUSE1.045e-4643.00RecName: Full=Exosome complex component RRP46; Alt... [more]
gi|75180792|sp|Q9LX74.1|EXOS5_ARATH1.786e-2529.20RecName: Full=Exosome complex exonuclease RRP46 ho... [more]
gi|29336822|sp|Q8U0L9.1|RRP41_PYRFU2.229e-2526.73RecName: Full=Exosome complex component Rrp41[more]
gi|254782534|sp|A2BKC0.1|RRP41_HYPBU1.147e-2430.88RecName: Full=Exosome complex component Rrp41[more]
gi|73919276|sp|Q5JIR6.1|RRP41_THEKO1.228e-2427.65RecName: Full=Exosome complex component Rrp41[more]
gi|226740341|sp|B6YSI2.1|RRP41_THEON1.423e-2426.73RecName: Full=Exosome complex component Rrp41[more]
gi|259645401|sp|C5A2B9.1|RRP41_THEGJ2.191e-2427.65RecName: Full=Exosome complex component Rrp41[more]
gi|29337010|sp|Q9V119.1|RRP41_PYRAB8.150e-2426.27RecName: Full=Exosome complex component Rrp41[more]
gi|29336576|sp|O29757.1|RRP41_ARCFU1.591e-2326.67RecName: Full=Exosome complex component Rrp41[more]

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BLAST of exosome complex component rrp46 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25
Match NameE-valueIdentityDescription
gi|1339049462|ref|XP_023712969.1|1.243e-5441.26exosome complex component RRP46 [Cryptotermes secu... [more]
gi|926624123|ref|XP_013777505.1|2.535e-5137.80exosome complex component RRP46-like [Limulus poly... [more]
gi|1227966439|ref|XP_021914573.1|3.763e-5139.05exosome complex component RRP46 [Zootermopsis neva... [more]
gi|971445889|ref|XP_015127981.1|1.554e-5045.89PREDICTED: exosome complex component RRP46 [Gallus... [more]
gi|744580027|ref|XP_010983543.1|6.500e-5043.48PREDICTED: exosome complex component RRP46 [Camelu... [more]
gi|560927422|ref|XP_006189877.1|8.903e-5043.48PREDICTED: exosome complex component RRP46 [Camelu... [more]
gi|321475274|gb|EFX86237.1|8.952e-5038.03hypothetical protein DAPPUDRAFT_193332 [Daphnia pu... [more]
gi|632989685|ref|XP_007883779.1|1.103e-4940.76PREDICTED: exosome complex component RRP46 [Callor... [more]
gi|1326156068|ref|XP_023355788.1|1.144e-4943.00exosome complex component RRP46 [Sarcophilus harri... [more]
gi|560985695|ref|XP_006215046.1|1.260e-4943.48PREDICTED: exosome complex component RRP46 [Vicugn... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold18_size714446supercontigscaffold18_size714446:713656..714306 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
Note-
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
snap_masked-scaffold18_size714446-processed-gene-6.27-mRNA-1snap_masked-scaffold18_size714446-processed-gene-6.27-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold18_size714446:713656..714306-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>snap_masked-scaffold18_size714446-processed-gene-6.27 ID=snap_masked-scaffold18_size714446-processed-gene-6.27|Name=exosome complex component rrp46|organism=Tigriopus kingsejongensis|type=gene|length=651bp|location=Sequence derived from alignment at scaffold18_size714446:713656..714306- (Tigriopus kingsejongensis)
ATGTCGGAGAACCAGCTTAGGCCTGTCTGGGCCCAGCTGGGCCTTTTGGG CCACACGGACGGCTCGGTCATGCTGAGCATGGGCCGCAGTGCGGTCATGT GCGGCGTCTACGGGCCGGCCGAGGTGAAGCCGCACAAGGAGAAGCTGGAG GGGGCCACGGTCGAGGTCCAGTGGCGTCCGCCCACCGGGGCCTCGGGCCT GGCCGAGCGGGCCTTAGAGTCTGTCCTCCGAGGCCTGGTGAGCAGTTCGG TCCTGACCTCGCTCCATCCTCGCACCTGCGTCCACGTCTCGCTCCAGCCG CTGGACCGGGACGGCGGGGAGCTGGCCTCGGCCGTCAATGCGGCTTGCCT GGCCTTGATCGACGCCTCTGTGGCCATGCGCTGCCTCTTTGCGGCCGTGC AAGTGGCCCGGGATCCCGCCGGCCGCCTCCTCGTGGATCCCTGCCGGAAG CAATTGAGGACGGCCACGGCCTCGGCCACCTTCGTCTTCGAGTCGGTCCA ATCGGACGTGTTGGCCACGCACCTCGAAGGTCGCTGGCCCGAGCAGGCCT TCCAAGAGGGCCTCCAGCTGGCCTCGGCCGGGGCCCAACACCTCTTCCAG TTCTACCGAGACACCGTCCAGCGGAAATACTCCAAAGACCTGGCCCAATA A
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Synonyms
The feature 'exosome complex component rrp46' has the following synonyms
Synonym
Tk08501
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