thyroid hormone receptor alpha a, snap_masked-scaffold235_size242898-processed-gene-1.1 (gene) Tigriopus kingsejongensis

Overview


Name	thyroid hormone receptor alpha a
Unique Name	snap_masked-scaffold235_size242898-processed-gene-1.1
Type	gene
Organism	Tigriopus kingsejongensis (Tigriopus kingsejongensis)

Associated RNAi Experiments

Nothing found

Homology

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BLAST of thyroid hormone receptor alpha a vs. L. salmonis genes
Match: EMLSAG00000008261 (supercontig:LSalAtl2s:LSalAtl2s49:858199:860758:1 gene:EMLSAG00000008261 transcript:EMLSAT00000008261 description:"maker-LSalAtl2s49-augustus-gene-8.3")

HSP 1 Score: 75.8702 bits (185), Expect = 8.036e-15
Identity = 46/110 (41.82%), Postives = 67/110 (60.91%), Query Frame = 0

Query:    8 RSRVCSICGANSETYHLNYGVSSCFSCRAFFRRALERTRNPKFNCKFGGKCEITEKNRK-CRKCRFDKCIGQGMKRDLVMDDTQKVQ-----RFRKLIRQNLLADPEKGM 111
            R   C IC +++   H++YG  +C SCRAFFRRA+    N +++C     C IT++ RK C+ CRF+KC+  GMK   VM +++K +     R +KL  Q LL DPE G+
Sbjct:   59 RKVTCHIC-SDTANDHIHYGAIACXSCRAFFRRAV--ICNAEYHCSRDKTCFITKETRKHCQFCRFNKCLEAGMKNTWVMSESEKREKKEKIRLKKLKAQQLL-DPENGV 164

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BLAST of thyroid hormone receptor alpha a vs. L. salmonis genes
Match: EMLSAG00000012651 (supercontig:LSalAtl2s:LSalAtl2s959:3535:5114:-1 gene:EMLSAG00000012651 transcript:EMLSAT00000012651 description:"maker-LSalAtl2s959-snap-gene-0.24")

HSP 1 Score: 71.2478 bits (173), Expect = 2.703e-13
Identity = 39/102 (38.24%), Postives = 61/102 (59.80%), Query Frame = 0

Query:    4 KEPKRSR-VCSICGANSETYHLNYGVSSCFSCRAFFRRALERTRNPKFNCKFGGKCEITEKNRK-CRKCRFDKCIGQGMKRDLVMDDTQKVQR-FRKLIRQN 102
            ++PK +  VC++CG  +   H++YG  +CFSCRAFFRR++   ++  + C     C IT   RK C+ CR+ KC+  GMK   V+ + +K  R   K +R+N
Sbjct:   82 RKPKMTEMVCNVCGDKAPD-HIHYGGIACFSCRAFFRRSVP--KHTTYFCSTDQACMITITTRKNCQFCRYKKCLESGMKPSWVLSEEEKSSRNLIKYVRKN 180

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BLAST of thyroid hormone receptor alpha a vs. L. salmonis genes
Match: EMLSAG00000008071 (supercontig:LSalAtl2s:LSalAtl2s47:304551:317770:1 gene:EMLSAG00000008071 transcript:EMLSAT00000008071 description:"snap_masked-LSalAtl2s47-processed-gene-3.10")

HSP 1 Score: 70.0922 bits (170), Expect = 7.718e-13
Identity = 37/107 (34.58%), Postives = 62/107 (57.94%), Query Frame = 0

Query:    4 KEPKRSRVCSICGANSETYHLNYGVSSCFSCRAFFRRALERTRNPKFNCKFGGKCEITEKNRK-CRKCRFDKCIGQGMKRDLVMDDTQK--VQRFRKLIRQNLLADP 107
            +E  + R C +CG  +  +H  YGVSSC +C+AFF+R ++   N ++      +CEI ++ RK C+ CRF KC+  GM ++ V  D  +   Q++R++I  +    P
Sbjct:  263 EEEGQRRTCLVCGDIASGFH--YGVSSCEACKAFFKRTIQ--GNIEYTXPASNECEINKRRRKACQACRFQKCLRMGMLKEGVRLDRVRGGRQKYRRMIESSPYIQP 365

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BLAST of thyroid hormone receptor alpha a vs. L. salmonis genes
Match: EMLSAG00000013004 (supercontig:LSalAtl2s:LSalAtl2s98:942409:953748:1 gene:EMLSAG00000013004 transcript:EMLSAT00000013004 description:"augustus_masked-LSalAtl2s98-processed-gene-9.1")

HSP 1 Score: 70.0922 bits (170), Expect = 8.681e-13
Identity = 33/91 (36.26%), Postives = 55/91 (60.44%), Query Frame = 0

Query:    7 KRSRVCSICGANSETYHLNYGVSSCFSCRAFFRRALERTRNPKFNCKFGGKCEITEKNR-KCRKCRFDKCIGQGMKRDLVMDDTQKVQRFR 96
            K S +C++CG N+   H  YGV +C  C+ FF+R +++  N K+ C     C + ++ R +C+ CRF KC+  GM +++V  D+ K +R R
Sbjct:  404 KASLLCAVCGDNAACQH--YGVRTCEGCKGFFKRTVQK--NAKYVCLADKNCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGR 490

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BLAST of thyroid hormone receptor alpha a vs. L. salmonis genes
Match: EMLSAG00000005090 (supercontig:LSalAtl2s:LSalAtl2s269:306853:308464:-1 gene:EMLSAG00000005090 transcript:EMLSAT00000005090 description:"augustus_masked-LSalAtl2s269-processed-gene-3.0")

HSP 1 Score: 68.5514 bits (166), Expect = 1.909e-12
Identity = 31/85 (36.47%), Postives = 48/85 (56.47%), Query Frame = 0

Query:   11 VCSICGANSETYHLNYGVSSCFSCRAFFRRALERTRNPKFNCKFGGKCEI-TEKNRKCRKCRFDKCIGQGMKRDLVMDDTQKVQR 94
            +C +CG  +  YH  Y   +C  C+ FFRR++  T+N  + CK+ G CEI     RKC+ CR  KC   GM+ + V+ +   +Q+
Sbjct:  172 LCLVCGDRASGYH--YNALACEGCKGFFRRSI--TKNSNYTCKWNGDCEIDMYMRRKCQACRLKKCYATGMRAECVVPERTCIQK 252

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BLAST of thyroid hormone receptor alpha a vs. L. salmonis genes
Match: EMLSAG00000004451 (supercontig:LSalAtl2s:LSalAtl2s231:945915:949068:1 gene:EMLSAG00000004451 transcript:EMLSAT00000004451 description:"snap_masked-LSalAtl2s231-processed-gene-9.18")

HSP 1 Score: 67.781 bits (164), Expect = 4.005e-12
Identity = 32/84 (38.10%), Postives = 48/84 (57.14%), Query Frame = 0

Query:   12 CSICGANSETYHLNYGVSSCFSCRAFFRRALERTRNPKFNCKFGGKCEITEKNRK-CRKCRFDKCIGQGMKRDLVMDDTQKVQR 94
            C +CG     +H  YG+ SC SC+ FF+R ++  +N  + C  G +C +T   RK C  CRFDKC+  GMK + + +D  +  R
Sbjct:  155 CPVCGDKISGFH--YGIFSCESCKGFFKRTVQNKKN--YVCLRGSQCPVTISTRKKCPACRFDKCLNIGMKLEAIREDRTRGGR 234

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BLAST of thyroid hormone receptor alpha a vs. L. salmonis genes
Match: EMLSAG00000011907 (supercontig:LSalAtl2s:LSalAtl2s83:639505:641027:-1 gene:EMLSAG00000011907 transcript:EMLSAT00000011907 description:"maker-LSalAtl2s83-augustus-gene-6.22")

HSP 1 Score: 67.3958 bits (163), Expect = 4.185e-12
Identity = 36/95 (37.89%), Postives = 53/95 (55.79%), Query Frame = 0

Query:   10 RVCSICGANSETYHLNYGVSSCFSCRAFFRRALERTRNPKFNCKFGGK-CEITEKNRK-CRKCRFDKCIGQGMKRDLVMDDTQKVQRFRKLIRQN 102
            R+C ICG  +   H+ YG   C SCRAFFRR+++     +F+C    + C I  + RK C+ CRF KCI  GM+   V+ D ++  +   +I  N
Sbjct:  104 RLCQICGEVAGK-HVYYGGQCCTSCRAFFRRSVQNNSYKQFSCCSKTEDCIINLQTRKSCQLCRFQKCISAGMRASWVLPDGERRSKKSAMILNN 197

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BLAST of thyroid hormone receptor alpha a vs. L. salmonis genes
Match: EMLSAG00000007361 (supercontig:LSalAtl2s:LSalAtl2s418:374353:376789:1 gene:EMLSAG00000007361 transcript:EMLSAT00000007361 description:"maker-LSalAtl2s418-augustus-gene-3.13")

HSP 1 Score: 66.2402 bits (160), Expect = 1.158e-11
Identity = 56/235 (23.83%), Postives = 99/235 (42.13%), Query Frame = 0

Query:    6 PKRSRVCSICGANSETYHLNYGVSSCFSCRAFFRRALERTRNPKFNCKFGGKCEITEKNRK-CRKCRFDKCIGQGMKRDLVMDDTQKVQRFRKLIRQNLLADPEKGMVVKYKKASKKTSSMDMEPMSNGDQTSEGTNPKIESWNGKWDRIIAENSSLGHF--KDSVIRFHSSSVIPGLGGTRELDREYLVEHLKKVASLFRNFAQDNTEFSELPTEDQETLLKANTTKFLSLIIA 237
            P   + C++CG  +   H  YG +SC  C+ FFRR++ + R   + C+    C + +  R  CR CR   CI  GMK+  V ++  ++                           KKTS+ DM   +    T+     K+       + I+  N +  +F  +++V+     + I  +G + +     LVE  K + +           F EL  +DQ  LL+A++ + L + +A
Sbjct:  145 PNNIQNCAVCGDRATGKH--YGAASCDGCKGFFRRSVRKER--VYGCRQNRACIVNKDKRNNCRYCRLKMCIKAGMKKSAVQNERDRI------------------------SCRKKTSAKDMNSANELTVTALLNADKV-GQKSLLNSIVGGNINTNNFITEENVLANKQLASIEDIGHSMKEQLIVLVEWAKHIKA-----------FCELSVDDQVRLLRAHSGEHLLMGVA 339

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BLAST of thyroid hormone receptor alpha a vs. L. salmonis genes
Match: EMLSAG00000008543 (supercontig:LSalAtl2s:LSalAtl2s527:163002:172818:1 gene:EMLSAG00000008543 transcript:EMLSAT00000008543 description:"maker-LSalAtl2s527-augustus-gene-1.53")

HSP 1 Score: 66.6254 bits (161), Expect = 1.269e-11
Identity = 40/121 (33.06%), Postives = 61/121 (50.41%), Query Frame = 0

Query:    5 EPKRSRVCSICGANSETYHLNYGVSSCFSCRAFFRRALERTRNPKFNCKFGGKCEITEKNR-KCRKCRFDKCIGQGMKRDLVMDDTQKVQRFRKLIRQNLLADPEKGMVVKYKKASKKTSS 124
            +P++S VC IC   +   H  YG+ +C  C+ FF+R ++  R   + C   G+CEI +  R +C+ CRF KC+ +GM    V +D     R    +  N+         VKYKK  +  SS
Sbjct:  276 QPQQSLVCMICEDRATGLH--YGIITCEGCKGFFKRTVQNKR--IYTCVADGECEINKAQRNRCQYCRFQKCLQKGMVLAAVREDRMPGGRNSGAV-YNMYK-------VKYKKHKRANSS 384

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BLAST of thyroid hormone receptor alpha a vs. L. salmonis genes
Match: EMLSAG00000010267 (supercontig:LSalAtl2s:LSalAtl2s680:110406:112508:1 gene:EMLSAG00000010267 transcript:EMLSAT00000010267 description:"maker-LSalAtl2s680-augustus-gene-1.19")

HSP 1 Score: 65.855 bits (159), Expect = 1.314e-11
Identity = 35/84 (41.67%), Postives = 47/84 (55.95%), Query Frame = 0

Query:   10 RVCSICGANSETYHLNYGVSSCFSCRAFFRRALERTRNPKFNCKFGGK-CEITEKNRK-CRKCRFDKCIGQGMKRDLVMDDTQK 91
            R+C ICG  +   H+ YG   C SCRAFFRR+++     +F C    K C I  K RK C+ CRF KC+  GM+   V  D ++
Sbjct:  105 RLCQICGEVAGK-HVYYGGQCCTSCRAFFRRSVQNNSYKQFICCSQTKDCIINLKTRKACQLCRFQKCVSAGMRVSWVFPDRER 187

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BLAST of thyroid hormone receptor alpha a vs. SwissProt
Match: gi|13431919|sp|Q9W6N4.1|THA_HIPHI (RecName: Full=Thyroid hormone receptor alpha; AltName: Full=Nuclear receptor subfamily 1 group A member 1)

HSP 1 Score: 96.2857 bits (238), Expect = 4.481e-20
Identity = 69/230 (30.00%), Postives = 112/230 (48.70%), Query Frame = 0

Query:   12 CSICGANSETYHLNYGVSSCFSCRAFFRRALERTRNPKFNCKFGGKCEITEKNR-KCRKCRFDKCIGQGMKRDLVMDDTQKVQRFRKLIRQNLLADPEKGMVVKYKKASKKTSSMDMEPMSNGDQTSEGTNPKIESWNGKWDRIIAENSSLGHFKDSVIRFHSSSVIPGLGGTRELDREYLVEHLKKVASLFR---NFAQDNTEFSELPTEDQETLLKANTTKFLSLIIA 237
            C +CG  +  YH  Y   +C  C+ FFRR +++  +P ++CK+ G C I +  R +C+ CRF KCI  GM  DLV+DD+++V + R+LI +N      + M V+  +   +  + + E +         TN +  SW  K  + ++++   G             ++P   G + +D E   E  K +        +FA+    FSELP EDQ  LLK    + +SL  A
Sbjct:   59 CVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPAYSCKYEGCCIIDKITRNQCQLCRFKKCISVGMAMDLVLDDSKRVAK-RRLIEENREKRKREEM-VRTLQVRPEPDTAEWELIRMATDAHRHTNAQGSSWKQK-RKFLSDDIGQG------------PMVPTSDGDK-VDLEAFSEFTKIMTPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAA 270

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BLAST of thyroid hormone receptor alpha a vs. SwissProt
Match: gi|13431920|sp|Q9W785.1|THA_SALSA (RecName: Full=Thyroid hormone receptor alpha; AltName: Full=Nuclear receptor subfamily 1 group A member 1)

HSP 1 Score: 95.9005 bits (237), Expect = 5.529e-20
Identity = 71/230 (30.87%), Postives = 111/230 (48.26%), Query Frame = 0

Query:   12 CSICGANSETYHLNYGVSSCFSCRAFFRRALERTRNPKFNCKFGGKCEITEKNR-KCRKCRFDKCIGQGMKRDLVMDDTQKVQRFRKLIRQNLLADPEKGMVVKYKKASKKTSSMDMEPMSNGDQTSEGTNPKIESWNGKWDRIIAENSSLGHFKDSVIRFHSSSVIPGLGGTRELDREYLVEHLKKVASLFR---NFAQDNTEFSELPTEDQETLLKANTTKFLSLIIA 237
            C +CG  +  YH  Y   +C  C+ FFRR +++  +P ++CK+ G C I +  R +C+ CRF KCI   M  DLV+DD+++V + R+LI +N     +K  +VK  +A  +  S + E + +  +    TN +   W  K  + + E+               S   P   G + +D E   E  K +        +FA+    FSELP EDQ  LLK    + +SL  A
Sbjct:   59 CVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPAYSCKYDGCCIIDKITRNQCQLCRFRKCIAVCMAMDLVLDDSKRVAK-RRLIEEN-REKRKKDEIVKTLQARPEPDSSEWELIRHVTEAHRHTNAQGSHWKQK-RKFLPED------------IGQSPRAPTPDGDK-VDLEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAA 270

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BLAST of thyroid hormone receptor alpha a vs. SwissProt
Match: gi|6094470|sp|Q91241.1|THAA_PAROL (RecName: Full=Thyroid hormone receptor alpha-A; Short=THR-alpha-A; AltName: Full=Nuclear receptor subfamily 1 group A member 1-A)

HSP 1 Score: 95.9005 bits (237), Expect = 6.057e-20
Identity = 69/230 (30.00%), Postives = 112/230 (48.70%), Query Frame = 0

Query:   12 CSICGANSETYHLNYGVSSCFSCRAFFRRALERTRNPKFNCKFGGKCEITEKNR-KCRKCRFDKCIGQGMKRDLVMDDTQKVQRFRKLIRQNLLADPEKGMVVKYKKASKKTSSMDMEPMSNGDQTSEGTNPKIESWNGKWDRIIAENSSLGHFKDSVIRFHSSSVIPGLGGTRELDREYLVEHLKKVASLFR---NFAQDNTEFSELPTEDQETLLKANTTKFLSLIIA 237
            C +CG  +  YH  Y   +C  C+ FFRR +++  +P ++CK+ G C I +  R +C+ CRF KCI  GM  DLV+DD+++V + R+LI +N      + M V+  +   +  + + E +         TN +  SW  K  + ++++               S ++P   G + +D E   E  K +        +FA+    FSELP EDQ  LLK    + +SL  A
Sbjct:   59 CVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPSYSCKYEGCCIIDKITRNQCQLCRFKKCISVGMAMDLVLDDSKRVAK-RRLIEENREKRKREEM-VRTLQIRPEPDTAEWELIRMATDAHRHTNAQGSSWKQK-RKFLSDD------------IGQSPMVPTSDGDK-VDLEAFSEFTKIMTPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAA 270

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BLAST of thyroid hormone receptor alpha a vs. SwissProt
Match: gi|13431914|sp|Q90382.1|THA_CAIMO (RecName: Full=Thyroid hormone receptor alpha; AltName: Full=Nuclear receptor subfamily 1 group A member 1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.770e-19
Identity = 74/244 (30.33%), Postives = 117/244 (47.95%), Query Frame = 0

Query:    1 MSGKEPK---RSRVCSICGANSETYHLNYGVSSCFSCRAFFRRALERTRNPKFNCKFGGKCEITEKNR-KCRKCRFDKCIGQGMKRDLVMDDTQKVQRFRKLIRQNLLADPEKGMVVKYKKASKKTSSMDMEPMSNGDQTSEGTNPKIESWNGKWDRIIAENSSLGHFKDSVIRFHSSSVIPGLGGTRELDREYLVEHLKKVASLFR---NFAQDNTEFSELPTEDQETLLKANTTKFLSLIIA 237
            MSG  P    +   C +CG  +  YH  Y   +C  C+ FFRR +++  +P ++CK+ G C I +  R +C+ CRF KCI  GM  DLV+DD+++V + RKLI +N     ++ M +K  +     S+ + E +    +    TN +   W  K  + + E+  +G            S +  +    ++D E   E  K +        +FA+    FSELP EDQ  LLK    + +SL  A
Sbjct:   36 MSGYIPSYLDKDEQCVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPTYSCKYDGCCVIDKITRNQCQLCRFKKCISVGMAMDLVLDDSKRVAK-RKLIEENRERRRKEEM-IKSLQHRPSPSAEEWELIHVVTEAHRSTNAQGSHWKQK-RKFLPED--IGQ-----------SPMASMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAA 261

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BLAST of thyroid hormone receptor alpha a vs. SwissProt
Match: gi|135710|sp|P04625.1|THA_CHICK (RecName: Full=Thyroid hormone receptor alpha; AltName: Full=Nuclear receptor subfamily 1 group A member 1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.859e-19
Identity = 74/244 (30.33%), Postives = 117/244 (47.95%), Query Frame = 0

Query:    1 MSGKEPK---RSRVCSICGANSETYHLNYGVSSCFSCRAFFRRALERTRNPKFNCKFGGKCEITEKNR-KCRKCRFDKCIGQGMKRDLVMDDTQKVQRFRKLIRQNLLADPEKGMVVKYKKASKKTSSMDMEPMSNGDQTSEGTNPKIESWNGKWDRIIAENSSLGHFKDSVIRFHSSSVIPGLGGTRELDREYLVEHLKKVASLFR---NFAQDNTEFSELPTEDQETLLKANTTKFLSLIIA 237
            MSG  P    +   C +CG  +  YH  Y   +C  C+ FFRR +++  +P ++CK+ G C I +  R +C+ CRF KCI  GM  DLV+DD+++V + RKLI +N     ++ M +K  +     S+ + E +    +    TN +   W  K  + + E+  +G            S +  +    ++D E   E  K +        +FA+    FSELP EDQ  LLK    + +SL  A
Sbjct:   37 MSGYIPSYLDKDEQCVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPTYSCKYDGCCVIDKITRNQCQLCRFKKCISVGMAMDLVLDDSKRVAK-RKLIEENRERRRKEEM-IKSLQHRPSPSAEEWELIHVVTEAHRSTNAQGSHWKQK-RKFLPED--IGQ-----------SPMASMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAA 262

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BLAST of thyroid hormone receptor alpha a vs. SwissProt
Match: gi|135713|sp|P18117.1|THBA_XENLA (RecName: Full=Thyroid hormone receptor beta-A; Short=TRbetaA; Short=xTR; AltName: Full=Nuclear receptor subfamily 1 group A member 2-A)

HSP 1 Score: 93.9745 bits (232), Expect = 1.952e-19
Identity = 70/244 (28.69%), Postives = 114/244 (46.72%), Query Frame = 0

Query:    1 MSGKEPK---RSRVCSICGANSETYHLNYGVSSCFSCRAFFRRALERTRNPKFNCKFGGKCEITEKNR-KCRKCRFDKCIGQGMKRDLVMDDTQKVQRFRKLIRQNLLADPEKGMVVKYKKASKKTSSMDMEPMSNGDQTSEGTNPKIESWNGKWDRIIAENSSLGHFKDSVIRFHSSSVIPGLGGTRELDREYLVEHLKKVASLFR---NFAQDNTEFSELPTEDQETLLKANTTKFLSLIIA 237
            MSG  P    +  +C +CG  +  YH  Y   +C  C+ FFRR +++  +P ++CK+ GKC I +  R +C++CRF KCI  GM  DLV+DD +++ + RKLI +N      K  + K      + +  + E +    +    TN +   W  K  + + E+               + ++    G + +D E   +  K +        +FA+    F ELP EDQ  LLK    + +SL  A
Sbjct:    5 MSGYIPSYLDKDELCVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDNKRLAK-RKLIEEN-REKRRKDEIQKSLVQKPEPTQEEWELIQVVTEAHVATNAQGSHWKQK-RKFLPED------------IGQAPIVNAPEGGK-VDLEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAA 230

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BLAST of thyroid hormone receptor alpha a vs. SwissProt
Match: gi|6094472|sp|O42295.2|THA_APTPA (RecName: Full=Thyroid hormone receptor alpha; AltName: Full=Nuclear receptor subfamily 1 group A member 1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.032e-19
Identity = 74/244 (30.33%), Postives = 117/244 (47.95%), Query Frame = 0

Query:    1 MSGKEPK---RSRVCSICGANSETYHLNYGVSSCFSCRAFFRRALERTRNPKFNCKFGGKCEITEKNR-KCRKCRFDKCIGQGMKRDLVMDDTQKVQRFRKLIRQNLLADPEKGMVVKYKKASKKTSSMDMEPMSNGDQTSEGTNPKIESWNGKWDRIIAENSSLGHFKDSVIRFHSSSVIPGLGGTRELDREYLVEHLKKVASLFR---NFAQDNTEFSELPTEDQETLLKANTTKFLSLIIA 237
            MSG  P    +   C +CG  +  YH  Y   +C  C+ FFRR +++  +P ++CK+ G C I +  R +C+ CRF KCI  GM  DLV+DD+++V + RKLI +N     ++ M +K  +     S+ + E +    +    TN +   W  K  + + E+  +G            S +  +    ++D E   E  K +        +FA+    FSELP EDQ  LLK    + +SL  A
Sbjct:   37 MSGYIPSYLDKDEQCVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPTYSCKYDGCCVIDKITRNQCQLCRFKKCISVGMAMDLVLDDSKRVAK-RKLIEENRERRRKEEM-IKSLQHRPNPSAEEWELIHVVTEAHRSTNAQGSHWKQK-RKFLPED--IGQ-----------SPMASMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAA 262

[Close]

BLAST of thyroid hormone receptor alpha a vs. SwissProt
Match: gi|1729929|sp|Q02965.2|THB_LITCT (RecName: Full=Thyroid hormone receptor beta; AltName: Full=Nuclear receptor subfamily 1 group A member 2)

HSP 1 Score: 93.5893 bits (231), Expect = 2.063e-19
Identity = 70/244 (28.69%), Postives = 115/244 (47.13%), Query Frame = 0

Query:    1 MSGKEPK---RSRVCSICGANSETYHLNYGVSSCFSCRAFFRRALERTRNPKFNCKFGGKCEITEKNR-KCRKCRFDKCIGQGMKRDLVMDDTQKVQRFRKLIRQNLLADPEKGMVVKYKKASKKTSSMDMEPMSNGDQTSEGTNPKIESWNGKWDRIIAENSSLGHFKDSVIRFHSSSVIPGLGGTRELDREYLVEHLKKVASLFR---NFAQDNTEFSELPTEDQETLLKANTTKFLSLIIA 237
            MSG  P    +  +C +CG  +  YH  Y   +C  C+ FFRR +++  +P ++CK+ GKC I +  R +C++CRF KCI  GM  DLV+DD++++ + RKLI +N      K  + K      + +  + E +    +    TN +   W  K  + + E+               + ++    G + +D E   +  K +        +FA+    F ELP EDQ  LLK    + +SL  A
Sbjct:    5 MSGYIPSYLDKDELCVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLAK-RKLIEEN-REKRRKDELQKTLVQKPEPTPEEWELIQVVTEAHVATNAQGSHWKQK-RKFLPED------------IGQAPIVNAPEGGK-VDLEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAA 230

[Close]

BLAST of thyroid hormone receptor alpha a vs. SwissProt
Match: gi|2500920|sp|Q28570.1|THA_SHEEP (RecName: Full=Thyroid hormone receptor alpha; AltName: Full=Nuclear receptor subfamily 1 group A member 1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.893e-19
Identity = 71/244 (29.10%), Postives = 112/244 (45.90%), Query Frame = 0

Query:    1 MSGKEPK---RSRVCSICGANSETYHLNYGVSSCFSCRAFFRRALERTRNPKFNCKFGGKCEITEKNR-KCRKCRFDKCIGQGMKRDLVMDDTQKVQRFRKLIRQNLLADPEKGMVVKYKKASKKTSSMDMEPMSNGDQTSEGTNPKIESWNGKWDRIIAENSSLGHFKDSVIRFHSSSVIPGLGGTRELDREYLVEHLKKVASLFR---NFAQDNTEFSELPTEDQETLLKANTTKFLSLIIA 237
            MSG  P    +   C +CG  +  YH  Y   +C  C+ FFRR +++  +P ++CK+   C I +  R +C+ CRF KCI  GM  DLV+DD+++V + RKLI QN     ++ M+   ++  + T   + + +    +    TN +   W  +               D +      S I  +    ++D E   E  K +        +FA+    FSELP EDQ  LLK    + +SL  A
Sbjct:   39 MSGYIPSYLDKDEQCVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAK-RKLIEQNRERRRKEEMIRSLQQRPEPTPE-EWDLIHVATEAHRSTNAQGSHWKQRRK----------FLPDDI----GQSPIVSMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAA 264

[Close]

BLAST of thyroid hormone receptor alpha a vs. SwissProt
Match: gi|215273960|sp|Q9PVE4.2|THB_DANRE (RecName: Full=Thyroid hormone receptor beta; Short=TR-beta; Short=TRb; AltName: Full=Nuclear receptor subfamily 1 group A member 2; AltName: Full=Thyroid hormone receptor beta-1; Short=TRbeta1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.484e-19
Identity = 68/234 (29.06%), Postives = 112/234 (47.86%), Query Frame = 0

Query:    8 RSRVCSICGANSETYHLNYGVSSCFSCRAFFRRALERTRNPKFNCKFGGKCEITEKNR-KCRKCRFDKCIGQGMKRDLVMDDTQKVQRFRKLIRQNLLADPEKGMVVKYKKASKKTSSMDMEPMSNGDQTSEGTNPKIESWNGKWDRIIAENSSLGHFKDSVIRFHSSSVIPGLGGTRELDREYLVEHLKKVASLFR---NFAQDNTEFSELPTEDQETLLKANTTKFLSLIIA 237
            +  +C +CG  +  YH  Y   +C  C+ FFRR +++  NP + CK+ GKC I +  R +C++CRF KCI  GM  DLV+DD++++ + RKLI +N      + +        + T   + E +    +    TN +   W  K   +    S++G  +       S+ ++    G + +D E   +  K +        +FA+    F ELP EDQ  LLK    + +SL  A
Sbjct:   28 KDELCVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLNPTYACKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLAK-RKLIEENRERRRREELQKTVWDRPEPTQE-EWEMIRVVTEAHMATNAQGNHWKQKRKFL----SAVGVKEAKPEDIGSAPIVNAPEGNK-VDIEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAA 252

[Close]

BLAST of thyroid hormone receptor alpha a vs. nr
Match: gi|657600362|gb|AID52842.1| (nuclear receptor [Tigriopus japonicus])

HSP 1 Score: 108.227 bits (269), Expect = 9.469e-21
Identity = 45/91 (49.45%), Postives = 62/91 (68.13%), Query Frame = 0

Query:    7 KRSRVCSICGANSETYHLNYGVSSCFSCRAFFRRALERTRNPKFNCKFGGKCEITEKNR-KCRKCRFDKCIGQGMKRDLVMDDTQKVQRFR 96
            +RS++C+IC  NS+++HLNYG  +C SCRAFFRR ++  R  K  CK    C++T+ NR KCRKCR + C+  GM    VM++ QK  RFR
Sbjct:   30 RRSKICAICLTNSDSFHLNYGAPTCLSCRAFFRRIVQNGRVNKLTCKRNNDCDVTQSNRTKCRKCRLEACLKAGMNMQSVMNEIQKHDRFR 120

[Close]

BLAST of thyroid hormone receptor alpha a vs. nr
Match: gi|1169057796|ref|XP_020441622.1| (thyroid hormone receptor alpha isoform X2 [Monopterus albus])

HSP 1 Score: 103.605 bits (257), Expect = 1.868e-20
Identity = 72/230 (31.30%), Postives = 117/230 (50.87%), Query Frame = 0

Query:   12 CSICGANSETYHLNYGVSSCFSCRAFFRRALERTRNPKFNCKFGGKCEITEKNR-KCRKCRFDKCIGQGMKRDLVMDDTQKVQRFRKLIRQNLLADPEKGMVVKYKKASKKTSSMDMEPMSNGDQTSEGTNPKIESWNGKWDRIIAENSSLGHFKDSVIRFHSSSVIPGLGGTRELDREYLVEHLKKVASLFR---NFAQDNTEFSELPTEDQETLLKANTTKFLSLIIA 237
            C +CG  +  YH  Y   +C  C+ FFRR +++  +P ++CK+ G C I +  R +C+ CRF KCI  GM  DLV+DDT++V + R+LI +N     ++ M V+  +   + ++ + E +    +    TN +  SW  K  + + ++  +GH            ++P  GG + +D E   E  K +        +FA+    FSELP EDQ  LLK    + +SL  A
Sbjct:   59 CVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPSYSCKYEGCCIIDKLTRNQCQLCRFKKCISVGMAMDLVLDDTKRVAK-RRLIEENRERRKKEEM-VRMLQTRPEPNTTEWELIRMATEAHRHTNAQGSSWKQK-RKFLPDD--IGH----------GPIVPTFGGDK-VDLEAFSEFTKIMTPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAA 270

[Close]

BLAST of thyroid hormone receptor alpha a vs. nr
Match: gi|1169057794|ref|XP_020441621.1| (thyroid hormone receptor alpha isoform X1 [Monopterus albus])

HSP 1 Score: 103.605 bits (257), Expect = 1.976e-20
Identity = 72/230 (31.30%), Postives = 117/230 (50.87%), Query Frame = 0

Query:   12 CSICGANSETYHLNYGVSSCFSCRAFFRRALERTRNPKFNCKFGGKCEITEKNR-KCRKCRFDKCIGQGMKRDLVMDDTQKVQRFRKLIRQNLLADPEKGMVVKYKKASKKTSSMDMEPMSNGDQTSEGTNPKIESWNGKWDRIIAENSSLGHFKDSVIRFHSSSVIPGLGGTRELDREYLVEHLKKVASLFR---NFAQDNTEFSELPTEDQETLLKANTTKFLSLIIA 237
            C +CG  +  YH  Y   +C  C+ FFRR +++  +P ++CK+ G C I +  R +C+ CRF KCI  GM  DLV+DDT++V + R+LI +N     ++ M V+  +   + ++ + E +    +    TN +  SW  K  + + ++  +GH            ++P  GG + +D E   E  K +        +FA+    FSELP EDQ  LLK    + +SL  A
Sbjct:   59 CVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPSYSCKYEGCCIIDKLTRNQCQLCRFKKCISVGMAMDLVLDDTKRVAK-RRLIEENRERRKKEEM-VRMLQTRPEPNTTEWELIRMATEAHRHTNAQGSSWKQK-RKFLPDD--IGH----------GPIVPTFGGDK-VDLEAFSEFTKIMTPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAA 270

[Close]

BLAST of thyroid hormone receptor alpha a vs. nr
Match: gi|1101609565|ref|XP_018969184.1| (PREDICTED: thyroid hormone receptor alpha-like [Cyprinus carpio])

HSP 1 Score: 103.219 bits (256), Expect = 6.776e-20
Identity = 78/244 (31.97%), Postives = 117/244 (47.95%), Query Frame = 0

Query:    1 MSGKEPK---RSRVCSICGANSETYHLNYGVSSCFSCRAFFRRALERTRNPKFNCKFGGKCEITEKNR-KCRKCRFDKCIGQGMKRDLVMDDTQKVQRFRKLIRQNLLADPEKGMVVKYKKASKKTSSMDMEPMSNGDQTSEGTNPKIESWNGKWDRIIAENSSLGHFKDSVIRFHSSSVIPGLGGTRELDREYLVEHLKKVASLFR---NFAQDNTEFSELPTEDQETLLKANTTKFLSLIIA 237
            MSG  P    +   C +CG  +  YH  Y   +C  C+ FFRR +++  +P ++CK+ G C I +  R +C+ CRF KCI  GM  DLV+DD+++V + R+LI +N     ++ MV   K   + TSS + E +    +    TN +   W  K  + + E+               S V P   G + +D E   E  K +        +FA+    FSELP EDQ  LLK    + +SL  A
Sbjct:   30 MSGYIPSYLDKDEPCVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPSYSCKYDGCCIIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAK-RRLIEENREKRKKEEMVKSLKTRPEPTSS-EWELIRMVTEAHRHTNAQGSHWKQK-RKFLPED------------IGQSPVAPTSDGDK-VDLEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAA 255

[Close]

BLAST of thyroid hormone receptor alpha a vs. nr
Match: gi|1025325094|ref|XP_016387827.1| (PREDICTED: thyroid hormone receptor alpha [Sinocyclocheilus rhinocerous] >gi|1025325098|ref|XP_016387829.1| PREDICTED: thyroid hormone receptor alpha [Sinocyclocheilus rhinocerous] >gi|1025325102|ref|XP_016387830.1| PREDICTED: thyroid hormone receptor alpha [Sinocyclocheilus rhinocerous])

HSP 1 Score: 102.834 bits (255), Expect = 9.787e-20
Identity = 74/230 (32.17%), Postives = 113/230 (49.13%), Query Frame = 0

Query:   12 CSICGANSETYHLNYGVSSCFSCRAFFRRALERTRNPKFNCKFGGKCEITEKNR-KCRKCRFDKCIGQGMKRDLVMDDTQKVQRFRKLIRQNLLADPEKGMVVKYKKASKKTSSMDMEPMSNGDQTSEGTNPKIESWNGKWDRIIAENSSLGHFKDSVIRFHSSSVIPGLGGTRELDREYLVEHLKKVASLFR---NFAQDNTEFSELPTEDQETLLKANTTKFLSLIIA 237
            C +CG  +  YH  Y   +C  C+ FFRR +++  +P ++CK+ G C I +  R +C+ CRF KCI  GM  DLV+DD+++V + R+LI +N     ++ MV   K   + TSS + E +    +    TN +   W  K  + + E+               S V P   G + +D E   E  K +        +FA+  + FSELP EDQ  LLK    + +SL  A
Sbjct:   52 CVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPSYSCKYDGCCIIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAK-RRLIEENREKRKKEEMVKSLKTRPEPTSS-EWELIRMVTEAHRHTNAQGSHWKQK-RKFLPED------------IGQSPVAPTSDGDK-VDLEAFSEFTKIITPAITRVVDFAKKLSMFSELPCEDQIILLKGCCMEIMSLRAA 263

[Close]

BLAST of thyroid hormone receptor alpha a vs. nr
Match: gi|551703637|gb|AGY36897.1| (thyroid hormone receptor alpha A [Acanthogobius hasta])

HSP 1 Score: 102.449 bits (254), Expect = 1.158e-19
Identity = 73/236 (30.93%), Postives = 117/236 (49.58%), Query Frame = 0

Query:    6 PKRSRVCSICGANSETYHLNYGVSSCFSCRAFFRRALERTRNPKFNCKFGGKCEITEKNR-KCRKCRFDKCIGQGMKRDLVMDDTQKVQRFRKLIRQNLLADPEKGMVVKYKKASKKTSSMDMEPMSNGDQTSEGTNPKIESWNGKWDRIIAENSSLGHFKDSVIRFHSSSVIPGLGGTRELDREYLVEHLKKVASLFR---NFAQDNTEFSELPTEDQETLLKANTTKFLSLIIA 237
            P++   C +CG  +  YH  Y   +C  C+ FFRR +++  +P ++CK+ G C I +  R +C+ CRF KCI  GM  DLV+DD+++V + R+LI QN     +K   V+  +   +  S + E +    +  + TN +  SW  K  + + ++   G            S++P   G + +D E   E  K +        +FA+    FSELP EDQ  LLK    + +SL  A
Sbjct:   38 PEKDEPCVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPSYSCKYEGCCIIDKITRNQCQLCRFKKCISVGMAMDLVLDDSKRVAK-RRLIEQN-REKRKKEETVRMLQLRPEPDSSEWELIRMVTEAHKNTNAQGSSWKQK-RKFMPDDIGQG------------SMVPTSDGDK-VDLEAFSEFTKIMTPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAA 255

[Close]

BLAST of thyroid hormone receptor alpha a vs. nr
Match: gi|551703635|gb|AGY36896.1| (thyroid hormone receptor beta [Acanthogobius hasta])

HSP 1 Score: 102.064 bits (253), Expect = 1.190e-19
Identity = 76/241 (31.54%), Postives = 115/241 (47.72%), Query Frame = 0

Query:    8 RSRVCSICGANSETYHLNYGVSSCFSCRAFFRRALERTRNPKFNCKFGGKCEITEKNR-KCRKCRFDKCIGQGMKRDLVMDDTQKVQRFRKLIRQNLLADPEKGMVVKYKKASKKTSSMDMEPMSN-------GDQTSEGTNPKIESWNGKWDRIIAENSSLGHFKDSVIRFHSSSVIPGLGGTRELDREYLVEHLKKVASLFR---NFAQDNTEFSELPTEDQETLLKANTTKFLSLIIA 237
            +  +C +CG  +  YH  Y   +C  C+ FFRR +++  NP + CKF GKC I +  R +C++CRF KCI  GM  DLV+DD++++ + RKLI +N         V + ++  +KT    +EP            +    TN +   W  K  R     + +   K   I  H+S V P  G   ++D E   +  K +        +FA+    F ELP EDQ  LLK    + +SL  A
Sbjct:   26 KDELCVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLNPTYACKFEGKCAIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLAK-RKLIEEN--------RVKRKREELQKTVFDRLEPTQEVWELIRMVTEAHMATNAQGNHWKQK--RKFLSAAGVKEDKPEEIG-HASMVNPPEGN--KVDIEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAA 250

[Close]

BLAST of thyroid hormone receptor alpha a vs. nr
Match: gi|1024959599|ref|XP_016300793.1| (PREDICTED: thyroid hormone receptor alpha isoform X2 [Sinocyclocheilus anshuiensis])

HSP 1 Score: 102.064 bits (253), Expect = 1.542e-19
Identity = 77/244 (31.56%), Postives = 117/244 (47.95%), Query Frame = 0

Query:    1 MSGKEPK---RSRVCSICGANSETYHLNYGVSSCFSCRAFFRRALERTRNPKFNCKFGGKCEITEKNR-KCRKCRFDKCIGQGMKRDLVMDDTQKVQRFRKLIRQNLLADPEKGMVVKYKKASKKTSSMDMEPMSNGDQTSEGTNPKIESWNGKWDRIIAENSSLGHFKDSVIRFHSSSVIPGLGGTRELDREYLVEHLKKVASLFR---NFAQDNTEFSELPTEDQETLLKANTTKFLSLIIA 237
            MSG  P    +   C +CG  +  YH  Y   +C  C+ FFRR +++  +P ++CK+ G C I +  R +C+ CRF KC+  GM  DLV+DD+++V + R+LI +N     ++ MV   K   + TSS + E +    +    TN +   W  K  + + E+               S V P   G + +D E   E  K +        +FA+    FSELP EDQ  LLK    + +SL  A
Sbjct:   30 MSGYIPSYLDKDEPCVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPSYSCKYDGCCIIDKITRNQCQLCRFKKCLAVGMAMDLVLDDSKRVAK-RRLIEENREKRKKEEMVKSLKTRPEPTSS-EWELIRMVTEAHRHTNAQGSHWKQK-RKFLPED------------IGQSPVAPTSDGDK-VDLEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAA 255

[Close]

BLAST of thyroid hormone receptor alpha a vs. nr
Match: gi|1020415287|ref|XP_016126475.1| (PREDICTED: thyroid hormone receptor alpha isoform X2 [Sinocyclocheilus grahami])

HSP 1 Score: 101.679 bits (252), Expect = 1.755e-19
Identity = 77/244 (31.56%), Postives = 117/244 (47.95%), Query Frame = 0

Query:    1 MSGKEPK---RSRVCSICGANSETYHLNYGVSSCFSCRAFFRRALERTRNPKFNCKFGGKCEITEKNR-KCRKCRFDKCIGQGMKRDLVMDDTQKVQRFRKLIRQNLLADPEKGMVVKYKKASKKTSSMDMEPMSNGDQTSEGTNPKIESWNGKWDRIIAENSSLGHFKDSVIRFHSSSVIPGLGGTRELDREYLVEHLKKVASLFR---NFAQDNTEFSELPTEDQETLLKANTTKFLSLIIA 237
            MSG  P    +   C +CG  +  YH  Y   +C  C+ FFRR +++  +P ++CK+ G C I +  R +C+ CRF KC+  GM  DLV+DD+++V + R+LI +N     ++ MV   K   + TSS + E +    +    TN +   W  K  + + E+               S V P   G + +D E   E  K +        +FA+    FSELP EDQ  LLK    + +SL  A
Sbjct:   30 MSGYIPSYLDKDEPCVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPSYSCKYDGCCIIDKITRNQCQLCRFKKCLAVGMAMDLVLDDSKRVAK-RRLIEENREKRKKEEMVKSLKTRPEPTSS-EWELIRMVTEAHRHTNAQGSHWKQK-RKFLPED------------IGQSPVAPTSDGDK-VDLEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAA 255

[Close]

BLAST of thyroid hormone receptor alpha a vs. nr
Match: gi|1024959597|ref|XP_016300792.1| (PREDICTED: thyroid hormone receptor alpha isoform X1 [Sinocyclocheilus anshuiensis])

HSP 1 Score: 101.293 bits (251), Expect = 2.877e-19
Identity = 77/244 (31.56%), Postives = 117/244 (47.95%), Query Frame = 0

Query:    1 MSGKEPK---RSRVCSICGANSETYHLNYGVSSCFSCRAFFRRALERTRNPKFNCKFGGKCEITEKNR-KCRKCRFDKCIGQGMKRDLVMDDTQKVQRFRKLIRQNLLADPEKGMVVKYKKASKKTSSMDMEPMSNGDQTSEGTNPKIESWNGKWDRIIAENSSLGHFKDSVIRFHSSSVIPGLGGTRELDREYLVEHLKKVASLFR---NFAQDNTEFSELPTEDQETLLKANTTKFLSLIIA 237
            MSG  P    +   C +CG  +  YH  Y   +C  C+ FFRR +++  +P ++CK+ G C I +  R +C+ CRF KC+  GM  DLV+DD+++V + R+LI +N     ++ MV   K   + TSS + E +    +    TN +   W  K  + + E+               S V P   G + +D E   E  K +        +FA+    FSELP EDQ  LLK    + +SL  A
Sbjct:   38 MSGYIPSYLDKDEPCVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPSYSCKYDGCCIIDKITRNQCQLCRFKKCLAVGMAMDLVLDDSKRVAK-RRLIEENREKRKKEEMVKSLKTRPEPTSS-EWELIRMVTEAHRHTNAQGSHWKQK-RKFLPED------------IGQSPVAPTSDGDK-VDLEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAA 263

The following BLAST results are available for this feature:

BLAST of thyroid hormone receptor alpha a vs. L. salmonis genes
BLAST of thyroid hormone receptor alpha a vs. SwissProt
BLAST of thyroid hormone receptor alpha a vs. nr

BLAST of thyroid hormone receptor alpha a vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 19


Match Name	E-value	Identity	Description
EMLSAG00000008261	8.036e-15	41.82	supercontig:LSalAtl2s:LSalAtl2s49:858199:860758:1 ...	[more]
EMLSAG00000012651	2.703e-13	38.24	supercontig:LSalAtl2s:LSalAtl2s959:3535:5114:-1 ge...	[more]
EMLSAG00000008071	7.718e-13	34.58	supercontig:LSalAtl2s:LSalAtl2s47:304551:317770:1 ...	[more]
EMLSAG00000013004	8.681e-13	36.26	supercontig:LSalAtl2s:LSalAtl2s98:942409:953748:1 ...	[more]
EMLSAG00000005090	1.909e-12	36.47	supercontig:LSalAtl2s:LSalAtl2s269:306853:308464:-...	[more]
EMLSAG00000004451	4.005e-12	38.10	supercontig:LSalAtl2s:LSalAtl2s231:945915:949068:1...	[more]
EMLSAG00000011907	4.185e-12	37.89	supercontig:LSalAtl2s:LSalAtl2s83:639505:641027:-1...	[more]
EMLSAG00000007361	1.158e-11	23.83	supercontig:LSalAtl2s:LSalAtl2s418:374353:376789:1...	[more]
EMLSAG00000008543	1.269e-11	33.06	supercontig:LSalAtl2s:LSalAtl2s527:163002:172818:1...	[more]
EMLSAG00000010267	1.314e-11	41.67	supercontig:LSalAtl2s:LSalAtl2s680:110406:112508:1...	[more]

Pages

BLAST of thyroid hormone receptor alpha a vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|13431919\|sp\|Q9W6N4.1\|THA_HIPHI	4.481e-20	30.00	RecName: Full=Thyroid hormone receptor alpha; AltN...	[more]
gi\|13431920\|sp\|Q9W785.1\|THA_SALSA	5.529e-20	30.87	RecName: Full=Thyroid hormone receptor alpha; AltN...	[more]
gi\|6094470\|sp\|Q91241.1\|THAA_PAROL	6.057e-20	30.00	RecName: Full=Thyroid hormone receptor alpha-A; Sh...	[more]
gi\|13431914\|sp\|Q90382.1\|THA_CAIMO	1.770e-19	30.33	RecName: Full=Thyroid hormone receptor alpha; AltN...	[more]
gi\|135710\|sp\|P04625.1\|THA_CHICK	1.859e-19	30.33	RecName: Full=Thyroid hormone receptor alpha; AltN...	[more]
gi\|135713\|sp\|P18117.1\|THBA_XENLA	1.952e-19	28.69	RecName: Full=Thyroid hormone receptor beta-A; Sho...	[more]
gi\|6094472\|sp\|O42295.2\|THA_APTPA	2.032e-19	30.33	RecName: Full=Thyroid hormone receptor alpha; AltN...	[more]
gi\|1729929\|sp\|Q02965.2\|THB_LITCT	2.063e-19	28.69	RecName: Full=Thyroid hormone receptor beta; AltNa...	[more]
gi\|2500920\|sp\|Q28570.1\|THA_SHEEP	4.893e-19	29.10	RecName: Full=Thyroid hormone receptor alpha; AltN...	[more]
gi\|215273960\|sp\|Q9PVE4.2\|THB_DANRE	7.484e-19	29.06	RecName: Full=Thyroid hormone receptor beta; Short...	[more]

Pages

BLAST of thyroid hormone receptor alpha a vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|657600362\|gb\|AID52842.1\|	9.469e-21	49.45	nuclear receptor [Tigriopus japonicus]	[more]
gi\|1169057796\|ref\|XP_020441622.1\|	1.868e-20	31.30	thyroid hormone receptor alpha isoform X2 [Monopte...	[more]
gi\|1169057794\|ref\|XP_020441621.1\|	1.976e-20	31.30	thyroid hormone receptor alpha isoform X1 [Monopte...	[more]
gi\|1101609565\|ref\|XP_018969184.1\|	6.776e-20	31.97	PREDICTED: thyroid hormone receptor alpha-like [Cy...	[more]
gi\|1025325094\|ref\|XP_016387827.1\|	9.787e-20	32.17	PREDICTED: thyroid hormone receptor alpha [Sinocyc...	[more]
gi\|551703637\|gb\|AGY36897.1\|	1.158e-19	30.93	thyroid hormone receptor alpha A [Acanthogobius ha...	[more]
gi\|551703635\|gb\|AGY36896.1\|	1.190e-19	31.54	thyroid hormone receptor beta [Acanthogobius hasta...	[more]
gi\|1024959599\|ref\|XP_016300793.1\|	1.542e-19	31.56	PREDICTED: thyroid hormone receptor alpha isoform ...	[more]
gi\|1020415287\|ref\|XP_016126475.1\|	1.755e-19	31.56	PREDICTED: thyroid hormone receptor alpha isoform ...	[more]
gi\|1024959597\|ref\|XP_016300792.1\|	2.877e-19	31.56	PREDICTED: thyroid hormone receptor alpha isoform ...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold235_size242898	supercontig	scaffold235_size242898:99349..103659 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
maker	2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides	2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt	2018-04-19
T. kingsejongensis proteins Blastp vs. NR	2018-05-15

Properties


Property Name	Value
Note	-

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
snap_masked-scaffold235_size242898-processed-gene-1.1-mRNA-1	snap_masked-scaffold235_size242898-processed-gene-1.1-mRNA-1	Tigriopus kingsejongensis	mRNA

Sequences

The following sequences are available for this feature:

gene from alignment at scaffold235_size242898:99349..103659+

gene from alignment at scaffold235_size242898:99349..103659+

Legend: mRNA

Hold the cursor over a type above to highlight its positions in the sequence below.

>snap_masked-scaffold235_size242898-processed-gene-1.1 ID=snap_masked-scaffold235_size242898-processed-gene-1.1|Name=thyroid hormone receptor alpha a|organism=Tigriopus kingsejongensis|type=gene|length=4311bp|location=Sequence derived from alignment at scaffold235_size242898:99349..103659+ (Tigriopus kingsejongensis)
ATGTCGGGAAAGGAACCAAAACGAAGCAGAGTTTGCTCCATTTGTGGAGC
CAATTCTGAGACCTACCACTTGAATTATGGGGTAAGCAGCTGCTTTAGCT
GTAGAGCATTCTTCCGGAGAGCCCTGGAACGAACGAGGAACCCCAAGTTC
AACTGCAAGTTTGGTGGCAAGTGTGAAATCACCGAGAAGAACCGAAAGTG
CAGAAAATGCAGATTCGACAAATGCATCGGGCAAGGAATGAAGCGCGACC
TGGTCATGGACGACACCCAAAAAGTGCAACGTTTCCGAAAGCTCATCCGC
CAAAATCTTTTGGCTGATCCCGAGAAGGGTATGGTGGTCAAGTACAAGAA
GGCCTCGAAGAAGACGAGCTCCATGGACATGGAGCCAATGAGTAACGGTG
ATCAGACTTCAGAGGGGACAAATCCCAAGATCGAGTCGTGGAACGGCAAG
TGGGACAGGATCATTGCCGAAAACAGTTCCTTAGGGCATTTCAAAGACTC
GGTCATCCGATTCCATAGCTCCTCGGTGATTCCAGGGCTGGGTGGAACCC
GGGAGTTGGACAGAGAGTACTTGGTAGAGCACCTCAAGAAAGTTGCTTCT
CTATTCAGAAATTTTGCTCAAGACAACACCGAGTTTTCTGAATTGCCTAC
CGAGGATCAAGAGACCCTCCTGAAGGCGAACACCACCAAGTTTTTGAGCT
TGATCATTGCCAACTATCTGACTCTACCTTTCCCTGATGGAATCAACTGG
CTACTACTCGGACAGATCATTCCAGGCTTGGAAGATTTGGCCCTGAACAA
GTCCTCCCCAGCATTCCTTTGTTTCAGTATTGGACTAGCCATTGGCGAAG
ACTTTCCTGGCTTGATCTCACTCTTGGAGGAGGTAGACATGTTCCAATTC
AATTGCTCCAACATTGGATCAATCGCATTGGGCATTTTGTTTCACATTGG
GGACCAGAGCAATGTCCCCCTTGAGGAACCCACACATGTCAGCACATCAC
AAAACGAAATATTTCACGTCCTCGAGAGCCTAGTGGATGTGGAGCCTTTC
ATGAACTGCCTCCAGCAAATATCCAAGAAAGTCATACCCTTCTGGTTTCC
AGAAGTGACCCAGGATTCCCATTCGCTCTTACCAGTCAGCAGCCTTGCTT
TTGAAGACTCGTATGAGCGGCTTCAAACTGATCTCCAGTACTTCGCCGAG
GTCAACGATATTGTTAACTACGGCGAGGATCTCATGATGGAATGCATCAT
GTTCAACTTTGATGTCCCTCTCACCAAGCGGTTCTATGGGATGATAGCTC
AGATCTGGGCCCAGAGATTCTTTTACGTCCTCAGGAAAACAACGAATATC
AAGGAGAAACCAGTTGAAGTCCAGAACCAGATTCTTGCGCGAATGGTCCT
GCCTCTCATCGCATTGGTCCAAGCGCGAATGGAAGCCCTTCCAGTAGTCG
AGGAACAAATTCGATTTTGCTGCGGCACAAGTGACATCGAGGAATACATC
GACAAGTACCGAGATATTGTCCCCGACAAGAGCTATCAACTCATGAAGAT
CCGTAGCATGAACAAGAACTACGCCCTCTACGACAAGGAAACACAAGACG
ACCTGGTGGCACTTAACAAGGAGCTCATGCCAATGGTGGCAGACGAGACC
TTGTTCCGCATTATCATTCTCTTCACCATGGCCGCCTGTGTGCTGGACCC
AGCCAATGACAACTCCGACATCTACGTCAAGCACTTCAAGTATCAGCTCG
AATCGAAGGGGCACCACGATCCGGACCTGTCCCTCGCGATTTGCGTGCAG
AACACCAAGAAGCTGACGAAAGTCATGAGCAAAGTGTGTGGAATGTCCTA
ACTACACTACTACTTCAATTCGGTGTTTAGCGCGCACTTTGTTTTTGGGC
ACTACCTCAAATGTGAAACCATCCTGCTCACATCTGTCGATACACAGTAA
CAGGTCTACGGTAGTTCTAGTTGTTATTCAATTCAGGGTGCACCCTATAT
TTTAGTGTCGTGAGAAAAGAAACATAGCTATCTATCTATAAATCTATATA
TAATGGAAGTATGGAAATAAATATACGTTCCCAAGATCTCTGCTACACTC
TTTGCAATCCTCATCATCTACAAGTTACATAGAACAGAGGCGATATGTCA
GCTAATATCATTAAGTATGCTTTGGGTCGATTTACTCCGTATCATCGTAG
TACCAATCTTGATCAATTGCTGTTTCAGTCATCTTGCCTGAATCTTGGTT
TGCCACGCACACTAAGAAAGAAGTCTCAATCAGATGAAACTCTCTGAGGT
GAGAAAGACCTCATCGCAGTGAAACACCCTTCGAATCCCTCGATACTAAG
GGAAATAAGACGGCCTTGCGGATAGAGCTTCCCTCTGATGGGGGTTTGCC
CGTTCCCTACCGAATACCTAAGTTTCACCATAAATTATGTTAAGGGTGGT
TAGATTTTTTGAGAAAGGAGTACAAATTACCCTAATTATGCTTGAGTTTG
TACAATGTCCGTACAAATATTTTTATTTCTTATGTCTGCTATAACCGTGA
CCCCGTTAGGTATTGGCACTTCTCACAGCCAATCCCACTATATGTGCAGT
ACATGATAGTACTTGTACCGAGTGCGAACGCAAAACTTTCCGTTGTGCCA
AGTGAATTTGTGACATCAATGTTTGCTTAAGGGTGCATTAGTGTAAGTTT
CATGAAACTTGCGAATCTCATACCGGTTGGTGATTGGTAACTTTTTTTTA
TTGCCTCTTAAATCTAGTGGCAAAATCCCAAAAAAGGTAGAATCTTTGAC
AGAATACTTGGAATAATCGACAGCCAAAATCGGCTTGAGCTTGATTCAAT
CCATGGTCAAAAAAGCCAAAGGTGTTAATAACCAACATATCATTATCAAA
TGTATCATGTTAGACCTGAAGGGTCTTTTGAGAGAAATATGAGCTACTAG
TTATGATTGCGACTCTCATGGTCTAGGAATATCGGGAGACACTGTATAGG
TGCGGCCAAATCTTGAGGAAGGGTCCCTTCTGGTTCCCCACAAATCAAAG
TAGTGATTGGAACTGGATTGCAGGGGCTGCACGCTGACTCGCTAAATGTT
ATGTTTGGTGTGCGTAGTTCTTTATTTCAATCATAACTGCTTCGTCAATC
CGTCTCCTGGAGTAATGTCACCAGGAGGCGATTTTCGAGCAAGAGCGTCT
AATTAGTAAAAGCTCACTGCATTGGCAGAAGTACATTACAATTCCTCCCC
TCCCCTGAGCGTCAGCAGGGATGTGAGGAATGTTATGACTAGGGCTGTAA
AAACCTGGAAAACACTGTTTGCTGCCTTTTTCGTTTTTTTTTGCTGGAAG
TAATCTTAAATGCTGGAAATAGCCTTAAATGCTGGAAATCTATTTTTTTT
CTGGAATTAAAAATAAAATATCGGTATATGCCTGACTGTAAATGCTTCAA
CATTGGCAAAAAACTTAAAGCTGGAGTCCAAATTACTTGGAGAAGAAAAT
GGGTTCAAGCCAGATTTCATCAAAATTCAGCGTGGCTTTTTTGTATAGTT
TTATCCGCTTCCAACGTTTCAAAAAGTGGCTAATCCTAGCAAGGGTGTAT
TTTTGGCTCGTTTCCGATTCACACCATTGTTAACAGATTTGTTGGATTTA
GACTGTCGGATCCTGAAATTGTGGAACGAAATGTGATTGTGACATTTACA
AAGCTATCAAATAAAGTGAATTTAAAAAGAGGAAGTTTTTAAAAAGAATT
TAAAACCAATAGTTGGAGAGAAAACGTATTGTTACTGTAAAAATTCAAAC
ATTTGTCTAATTTTTTTATCTTCTTGTTTATCTTCATTGCTGCGTGTCGA
ATTATCGGTCACTTATGAAAATACTGCTCGTTCGCATCAGATTCTATGGC
GTTTGATCTTTTGCCTTCAAATATCAATTATTATTGTATTGAAGCCCGCA
AATAGTTTTCCTTTTCATTCTGTTTTCTCGACTGCATTACGTTTACTAAC
GTTTATTAAAATCTGCATTTTGACATTTGAAGTAGTTCAAATTATTGTGA
AATTTTTCTTTTACATATGTTTTTGGCAGTTTTTCGTGACTTCCTTCGTA
ACCTAATGGATGAATTTCCTCCATTGGGACTGTTTATTTCTTTTAGGCAT
TTATTAGATTTTTTGCGACTCCTCAGATTTCAGGCTTTTTTATTTGCTGT
AAATTTGGCTTTTTCACTCTTTTTTGCTGGTTTTATTTGCTGGAAACCTC
ACTGTCTTCTGTTTCCAGCGCTTTTTTTTGGCAATGTTTACTGTTTTTTT
TACAGCCCTAG

Synonyms

The feature 'thyroid hormone receptor alpha a' has the following synonyms


Synonym
Tk06562

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