retinoid x, snap_masked-scaffold296_size217904-processed-gene-1.3 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000012651 (supercontig:LSalAtl2s:LSalAtl2s959:3535:5114:-1 gene:EMLSAG00000012651 transcript:EMLSAT00000012651 description:"maker-LSalAtl2s959-snap-gene-0.24") HSP 1 Score: 106.686 bits (265), Expect = 2.876e-24 Identity = 74/257 (28.79%), Postives = 124/257 (48.25%), Query Frame = 0 Query: 64 VCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVKR-MERRQSQGMESLPRQVGEACEATWSRDSEDQPRETSRDALESHGSTSSVQSSSPELGIPKQ---------VSFDPTEDQFIENITKIYDQQFRSVSLGEVIIKEMI-VSSLYNVPISVSSSLSAYRLMVNRVTKIANSFDTFCTFPMRIKMALLKKNADPMVLLNGATFFSE 309 VC +C + A H+HYG I CFSC+AFFRR++ HT + C+ + C + +RK+CQ CR+ CL GMK WVLS++E+ R + + + + + V + S Q +D L S+SS SS+ P + F E + I+N+ D + + E+++ E++ ++++ ++ ++ YR++ +RV K A D F K LL KN D M +L F++ Sbjct: 90 VCNVCGDKAPDHIHYGGIACFSCRAFFRRSVPK--HTTYFCSTDQACMITITTRKNCQFCRYKKCLESGMKPSWVLSEEEKSSRNLIKYVRKNKTTCGKNVNNNNTIEVNLVSHLQSNSAVQDRLTLQSSSSSASSSASSSPAPISPYNIIHFHSLCFTTEEXRHIDNLIFAQDSTRNLIPMPELVMDEILEMTNISSLNMTSKGITEIYRVIYSRVAKFATYIDHFEELTSDDKKLLLSKNMDSMAILRTVVCFNK 344
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000008261 (supercontig:LSalAtl2s:LSalAtl2s49:858199:860758:1 gene:EMLSAG00000008261 transcript:EMLSAT00000008261 description:"maker-LSalAtl2s49-augustus-gene-8.3") HSP 1 Score: 97.0561 bits (240), Expect = 4.177e-21 Identity = 76/297 (25.59%), Postives = 132/297 (44.44%), Query Frame = 0 Query: 65 CRICQEPATRHLHYGSIVCFSCKAFFRRAI--QNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKE--------RVKRMERRQ------------------------SQGMESLPRQVGEACEATWS-RDSEDQPRETSRDALESHGSTSSVQSSSPELGIPKQVSFDPTEDQFIENITKIYDQQFRSVSLGEVIIKEMIVSSLYNVPISVSSSLSAYRLMVNRVTKIANSFDTFCTFPMRIKMALLKKNADPMVLLNGATFF--SESAKEQIQVSMGEDDA 324 C IC + A H+HYG+I C SC+AFFRRA+ E H C+ + C + +RKHCQ CR++ CL GMK+ WV+S+ E R+K+++ +Q + M ++ + + +S +++ + E R+ H TS + + G+ SF+ E ++ + + + + L V +K + S N PI SLS Y V R+T + F + LL N D +V + A + + + EQ ++ G++++ Sbjct: 63 CHICSDTANDHIHYGAIACXSCRAFFRRAVICNAEYH----CSRDKTCFITKETRKHCQFCRFNKCLEAGMKNTWVMSESEKREKKEKIRLKKLKAQQLLDPENGVKKSSFTPEWDKMLFQNNSNMHNMGNSTYDMSFSIFSKKNTLNTFSEEYRNCY-GHYRTSHIIQDCFDSGM----SFNKMEIHLVQEMLYWEIESRKKIPLNSVNMKSFMEYSQLNEPIPFEISLSGYNTCVQRITMFMTKINFFAALSPEDQKKLLLNNVDMVVNIKTARYLHPNNNITEQFEIINGKNNS 350
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000010267 (supercontig:LSalAtl2s:LSalAtl2s680:110406:112508:1 gene:EMLSAG00000010267 transcript:EMLSAT00000010267 description:"maker-LSalAtl2s680-augustus-gene-1.19") HSP 1 Score: 90.5077 bits (223), Expect = 4.906e-19 Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = 0 Query: 62 PEVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENR-CEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKER 144 P +C+IC E A +H++YG C SC+AFFRR++QN + F C + + C +N +RK CQ CR+ C+ GM+ WV +ER Sbjct: 104 PRLCQICGEVAGKHVYYGGQCCTSCRAFFRRSVQNNSYKQFICCSQTKDCIINLKTRKACQLCRFQKCVSAGMRVSWVFPDRER 187
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000011907 (supercontig:LSalAtl2s:LSalAtl2s83:639505:641027:-1 gene:EMLSAG00000011907 transcript:EMLSAT00000011907 description:"maker-LSalAtl2s83-augustus-gene-6.22") HSP 1 Score: 90.1225 bits (222), Expect = 5.995e-19 Identity = 37/84 (44.05%), Postives = 54/84 (64.29%), Query Frame = 0 Query: 62 PEVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENR-CEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKER 144 P +C+IC E A +H++YG C SC+AFFRR++QN + F+C + C +N +RK CQ CR+ C+ GM++ WVL ER Sbjct: 103 PRLCQICGEVAGKHVYYGGQCCTSCRAFFRRSVQNNSYKQFSCCSKTEDCIINLQTRKSCQLCRFQKCISAGMRASWVLPDGER 186
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000004174 (supercontig:LSalAtl2s:LSalAtl2s220:369739:371271:-1 gene:EMLSAG00000004174 transcript:EMLSAT00000004174 description:"augustus_masked-LSalAtl2s220-processed-gene-3.5") HSP 1 Score: 86.2705 bits (212), Expect = 1.217e-17 Identity = 43/121 (35.54%), Postives = 62/121 (51.24%), Query Frame = 0 Query: 31 VPMEADPKPAVSTSVKRGRPKKLNPTGPVDYPEVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVEN-----RCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVK 146 VP+ P P++ + + +K P D VCRIC + A H HYG+I CFSC+AFF R + F C N +C + +R HCQ CR+ CL GM +V + +ER++ Sbjct: 106 VPLPESPIPSLIEVKEEPKKRKRRPEPMTD---VCRICGDIAPPHNHYGAIACFSCRAFFGRTVHKGTQERFRCVRGNPDESGQCMITKATRTHCQFCRYRGCLSAGMXPSYVTTAEERLQ 223
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000008543 (supercontig:LSalAtl2s:LSalAtl2s527:163002:172818:1 gene:EMLSAG00000008543 transcript:EMLSAT00000008543 description:"maker-LSalAtl2s527-augustus-gene-1.53") HSP 1 Score: 81.2629 bits (199), Expect = 1.011e-15 Identity = 35/80 (43.75%), Postives = 47/80 (58.75%), Query Frame = 0 Query: 54 NPTGPVDYPEVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGM 133 NP+ VC IC++ AT LHYG I C CK FF+R +QN+ ++TC + CE+N R CQ CR+ CL+ GM Sbjct: 272 NPSSQPQQSLVCMICEDRATG-LHYGIITCEGCKGFFKRTVQNK--RIYTCVADGECEINKAQRNRCQYCRFQKCLQKGM 348
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000008902 (supercontig:LSalAtl2s:LSalAtl2s554:572309:581835:1 gene:EMLSAG00000008902 transcript:EMLSAT00000008902 description:"maker-LSalAtl2s554-snap-gene-5.6") HSP 1 Score: 74.7146 bits (182), Expect = 6.081e-14 Identity = 32/85 (37.65%), Postives = 49/85 (57.65%), Query Frame = 0 Query: 63 EVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVKR 147 E+C +C + + + HYG + C SCK FF+R +QN+ ++TC + C ++ RK C CR+ CL VGMK + V + R R Sbjct: 184 ELCPVCGDKVSGY-HYGLLTCESCKGFFKRTVQNK--KVYTCVADRSCVIDKTQRKRCPYCRFQKCLDVGMKLEAVRHDRMRGGR 265
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000008071 (supercontig:LSalAtl2s:LSalAtl2s47:304551:317770:1 gene:EMLSAG00000008071 transcript:EMLSAT00000008071 description:"snap_masked-LSalAtl2s47-processed-gene-3.10") HSP 1 Score: 73.559 bits (179), Expect = 1.283e-13 Identity = 37/96 (38.54%), Postives = 55/96 (57.29%), Query Frame = 0 Query: 65 CRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVKRMERRQSQGMESLP 160 C +C + A+ HYG C +CKAFF+R IQ + +T N CE+N RK CQ CR+ CLR+GM + V + +RV+ ++ + +ES P Sbjct: 271 CLVCGDIAS-GFHYGVSSCEACKAFFKRTIQGNIE--YTXPASNECEINKRRRKACQACRFQKCLRMGMLKEGV--RLDRVRGGRQKYRRMIESSP 361
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000005090 (supercontig:LSalAtl2s:LSalAtl2s269:306853:308464:-1 gene:EMLSAG00000005090 transcript:EMLSAT00000005090 description:"augustus_masked-LSalAtl2s269-processed-gene-3.0") HSP 1 Score: 68.1662 bits (165), Expect = 7.684e-12 Identity = 33/106 (31.13%), Postives = 59/106 (55.66%), Query Frame = 0 Query: 42 STSVKRGRPKKLNPTGPVDYPEVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVKR 147 S V+ R KK + + P + E+C +C + A+ + HY ++ C CK FFRR+I + +TC CE++ R+ CQ CR C GM+++ V+ ++ +++ Sbjct: 152 SQMVENERKKKGSSSRPAE--ELCLVCGDRASGY-HYNALACEGCKGFFRRSITKNSN--YTCKWNGDCEIDMYMRRKCQACRLKKCYATGMRAECVVPERTCIQK 252
BLAST of retinoid x vs. L. salmonis genes
Match: EMLSAG00000007361 (supercontig:LSalAtl2s:LSalAtl2s418:374353:376789:1 gene:EMLSAG00000007361 transcript:EMLSAT00000007361 description:"maker-LSalAtl2s418-augustus-gene-3.13") HSP 1 Score: 67.781 bits (164), Expect = 9.255e-12 Identity = 30/94 (31.91%), Postives = 52/94 (55.32%), Query Frame = 0 Query: 65 CRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVKRMERRQSQGMES 158 C +C + AT HYG+ C CK FFRR+++ E ++ C C +N R +C+ CR C++ GMK V ++++R+ ++ ++ M S Sbjct: 151 CAVCGDRATGK-HYGAASCDGCKGFFRRSVRKE--RVYGCRQNRACIVNKDKRNNCRYCRLKMCIKAGMKKSAVQNERDRISCRKKTSAKDMNS 241
BLAST of retinoid x vs. SwissProt
Match: gi|114152848|sp|Q94407.3|NHR48_CAEEL (RecName: Full=Nuclear hormone receptor family member nhr-48) HSP 1 Score: 93.9745 bits (232), Expect = 3.440e-18 Identity = 44/120 (36.67%), Postives = 71/120 (59.17%), Query Frame = 0 Query: 63 EVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVKRMER----RQSQGMESLPRQVGEACEATWSRDSEDQ 178 +VCR+C + A + ++ I C SCKAFFRR E C +CE+N VSR+ CQ+CR C VGMK +W++S++ R+++ +R R+ + +++ R + EAC S +S D+ Sbjct: 98 KVCRVCGDKAFSY-NFNVITCESCKAFFRRNANKEKE--IRCPFNEQCEINMVSRRFCQRCRLTKCFAVGMKKEWIMSEEARLEKKQRVEENRERRLQDAMNRALEEACMEDESENSYDE 214
BLAST of retinoid x vs. SwissProt
Match: gi|56405103|sp|P68305.1|THB_CAIMO (RecName: Full=Thyroid hormone receptor beta; AltName: Full=Nuclear receptor subfamily 1 group A member 2 >gi|56405104|sp|P68306.1|THB_CHICK RecName: Full=Thyroid hormone receptor beta; AltName: Full=Nuclear receptor subfamily 1 group A member 2) HSP 1 Score: 85.8853 bits (211), Expect = 1.899e-16 Identity = 35/89 (39.33%), Postives = 54/89 (60.67%), Query Frame = 0 Query: 59 VDYPEVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVKR 147 +D E+C +C + AT + HY I C CK FFRR IQ +H ++C E +C ++ V+R CQ+CR+ C+ VGM + VL +R+ + Sbjct: 9 LDKDELCVVCGDKATGY-HYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRFKKCIFVGMATDLVLDDSKRLAK 96
BLAST of retinoid x vs. SwissProt
Match: gi|135713|sp|P18117.1|THBA_XENLA (RecName: Full=Thyroid hormone receptor beta-A; Short=TRbetaA; Short=xTR; AltName: Full=Nuclear receptor subfamily 1 group A member 2-A) HSP 1 Score: 84.3445 bits (207), Expect = 6.715e-16 Identity = 40/109 (36.70%), Postives = 62/109 (56.88%), Query Frame = 0 Query: 59 VDYPEVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERV--------KRMERRQSQGMESL 159 +D E+C +C + AT + HY I C CK FFRR IQ +H ++C E +C ++ V+R CQ+CR+ C+ VGM + VL +R+ R +RR+ + +SL Sbjct: 13 LDKDELCVVCGDKATGY-HYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDNKRLAKRKLIEENREKRRKDEIQKSL 120
BLAST of retinoid x vs. SwissProt
Match: gi|3915110|sp|Q28571.1|THB_SHEEP (RecName: Full=Thyroid hormone receptor beta; AltName: Full=Nuclear receptor subfamily 1 group A member 2) HSP 1 Score: 84.3445 bits (207), Expect = 1.042e-15 Identity = 35/89 (39.33%), Postives = 54/89 (60.67%), Query Frame = 0 Query: 59 VDYPEVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVKR 147 +D E+C +C + AT + HY I C CK FFRR IQ +H ++C E +C ++ V+R CQ+CR+ C+ VGM + VL +R+ + Sbjct: 99 LDKDELCVVCGDKATGY-HYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAK 186
BLAST of retinoid x vs. SwissProt
Match: gi|1729929|sp|Q02965.2|THB_LITCT (RecName: Full=Thyroid hormone receptor beta; AltName: Full=Nuclear receptor subfamily 1 group A member 2) HSP 1 Score: 83.5741 bits (205), Expect = 1.117e-15 Identity = 35/89 (39.33%), Postives = 54/89 (60.67%), Query Frame = 0 Query: 59 VDYPEVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVKR 147 +D E+C +C + AT + HY I C CK FFRR IQ +H ++C E +C ++ V+R CQ+CR+ C+ VGM + VL +R+ + Sbjct: 13 LDKDELCVVCGDKATGY-HYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLAK 100
BLAST of retinoid x vs. SwissProt
Match: gi|939319623|sp|G5EFF5.1|DAF12_CAEEL (RecName: Full=Nuclear hormone receptor family member daf-12; AltName: Full=Abnormal dauer formation protein 12) HSP 1 Score: 85.5001 bits (210), Expect = 1.152e-15 Identity = 38/89 (42.70%), Postives = 53/89 (59.55%), Query Frame = 0 Query: 63 EVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVKRMERR 151 + CR+C + AT + ++ I C SCKAFFRR F C CE+NSVSR+ CQKCR C VGMK +W+L++++ +R R Sbjct: 116 KTCRVCGDHATGY-NFNVITCESCKAFFRRNALRPKE--FKCPYSEDCEINSVSRRFCQKCRLRKCFTVGMKKEWILNEEQLRRRKNSR 201
BLAST of retinoid x vs. SwissProt
Match: gi|586094|sp|P18113.2|THB_RAT (RecName: Full=Thyroid hormone receptor beta; AltName: Full=Nuclear receptor subfamily 1 group A member 2; AltName: Full=c-erbA-2; AltName: Full=c-erbA-beta) HSP 1 Score: 83.9593 bits (206), Expect = 1.653e-15 Identity = 43/125 (34.40%), Postives = 66/125 (52.80%), Query Frame = 0 Query: 25 IVHADRVPMEADPKPAVSTSVKRGRPKKLNPTGP--VDYPEVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVKR 147 I H D P + + + S + KK P +D E+C +C + AT + HY I C CK FFRR IQ +H ++C E +C ++ V+R CQ+CR+ C+ VGM + VL +R+ + Sbjct: 67 IFHLD--PDDVNDQSVSSAQTFQTEEKKCKGYIPSYLDKDELCVVCGDKATGY-HYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAK 188
BLAST of retinoid x vs. SwissProt
Match: gi|586093|sp|P37242.1|THB_MOUSE (RecName: Full=Thyroid hormone receptor beta; AltName: Full=Nuclear receptor subfamily 1 group A member 2; AltName: Full=c-erbA-2; AltName: Full=c-erbA-beta) HSP 1 Score: 83.9593 bits (206), Expect = 1.991e-15 Identity = 35/89 (39.33%), Postives = 54/89 (60.67%), Query Frame = 0 Query: 59 VDYPEVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVKR 147 +D E+C +C + AT + HY I C CK FFRR IQ +H ++C E +C ++ V+R CQ+CR+ C+ VGM + VL +R+ + Sbjct: 101 LDKDELCVVCGDKATGY-HYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAK 188
BLAST of retinoid x vs. SwissProt
Match: gi|586092|sp|P10828.2|THB_HUMAN (RecName: Full=Thyroid hormone receptor beta; AltName: Full=Nuclear receptor subfamily 1 group A member 2; AltName: Full=c-erbA-2; AltName: Full=c-erbA-beta) HSP 1 Score: 83.5741 bits (205), Expect = 2.377e-15 Identity = 35/89 (39.33%), Postives = 54/89 (60.67%), Query Frame = 0 Query: 59 VDYPEVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVKR 147 +D E+C +C + AT + HY I C CK FFRR IQ +H ++C E +C ++ V+R CQ+CR+ C+ VGM + VL +R+ + Sbjct: 101 LDKDELCVVCGDKATGY-HYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAK 188
BLAST of retinoid x vs. SwissProt
Match: gi|6093487|sp|Q25604.1|NHR1_ONCVO (RecName: Full=Nuclear hormone receptor-like 1) HSP 1 Score: 82.0333 bits (201), Expect = 3.157e-15 Identity = 41/114 (35.96%), Postives = 64/114 (56.14%), Query Frame = 0 Query: 50 PKKLNPTGPVDYPEVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVKR----MERRQSQGMESL 159 P+ + P P C +C + AT LHY +I C CK FFRR +Q ++ ++ C RCE++ +SR CQ CR+ CLR GM VL++ ER+ + ++ R+ + +E L Sbjct: 26 PRYMKPGQP------CVVCGDDAT-GLHYRAITCEGCKGFFRRTVQQKI--VYKCKSIERCEISKISRNICQFCRFQKCLRNGMTKSLVLNETERIAKRKMIIDNRERRKLEHL 130
BLAST of retinoid x vs. nr
Match: gi|657600352|gb|AID52837.1| (nuclear receptor [Tigriopus japonicus]) HSP 1 Score: 419.083 bits (1076), Expect = 9.750e-132 Identity = 214/383 (55.87%), Postives = 270/383 (70.50%), Query Frame = 0 Query: 29 DRVPMEADPKPAVSTSVKRGRPKKLNPTGPVDYPEVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVKRMERRQSQGMESLPRQVGEACEATWSRDSEDQPRET--------------------------SRDALESHGSTSSVQSSSPELGIPKQVSFDPTEDQFIENITKIYDQQFRSVSLGEVIIKEMIVSSLYNVPISVSSSLSAYRLMVNRVTKIANSFDTFCTFPMRIKMALLKKNADPMVLLNGATFFSESAKEQIQVSMGEDDALSSGILIDRSKEAIDKAGSISYWNWNTIQTYHSPDVEDVFSNQLKRLGTLLERNPVLLKLI 385 D V + D P STS + KK + V++ E CR+C+EPATRHLHYG+IVCFSCKAFFRRAIQN V+ F C+V+ +CEMNS+SRKHCQKCRW+ACL+VGM + WVLSK+ER+ R+ RR+ + + + GE A + D P +T RD+ + S SS SSSPE+ +P+ +S D ED+FI+ IT IYDQQF SVSLGEVIIKEMIVSSLY+VPISVSSSLSAYRLMV+RVTKIANSFDTF P++ MALLKKNADPMVL+NGATFFSESA +QIQVS+G +D +S +LIDRS+++I A +I+YWNWN+IQ H DVE++FS ++RLG LL+ NP +LK+ Sbjct: 2 DMVKEDHDRDPTPSTSAPTTKSKK--ASSQVEFSEKCRVCKEPATRHLHYGAIVCFSCKAFFRRAIQNNVYKFFNCSVDGKCEMNSISRKHCQKCRWEACLKVGMNANWVLSKEERLDRLNRRR---VSQVSPESGEFDPAPVNVQISDTPNQTLVPRDRREYNETSAKSVSQQASSSSNDRDSPPALSSGSSDASSSPEMKVPRLISGDVNEDRFIQKITCIYDQQFLSVSLGEVIIKEMIVSSLYDVPISVSSSLSAYRLMVSRVTKIANSFDTFFNLPIQTGMALLKKNADPMVLVNGATFFSESASDQIQVSLGAEDKEASMLLIDRSEKSIKSAKAITYWNWNSIQCQHDQDVEEMFSQNMERLGNLLDHNPTILKVF 379
BLAST of retinoid x vs. nr
Match: gi|1325258266|ref|XP_023325470.1| (uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258271|ref|XP_023325479.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258277|ref|XP_023325484.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258282|ref|XP_023325492.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258289|ref|XP_023325500.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258292|ref|XP_023325508.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258296|ref|XP_023325515.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258300|ref|XP_023325523.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258306|ref|XP_023325531.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258311|ref|XP_023325539.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258315|ref|XP_023325547.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258319|ref|XP_023325554.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258329|ref|XP_023325561.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258334|ref|XP_023325570.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258338|ref|XP_023325578.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258342|ref|XP_023325585.1| uncharacterized protein LOC111699122 [Eurytemora affinis]) HSP 1 Score: 130.183 bits (326), Expect = 3.565e-27 Identity = 69/169 (40.83%), Postives = 95/169 (56.21%), Query Frame = 0 Query: 48 GRPKKLNPTGPVDYPEVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVKRMER-RQSQGMESLPRQVGEACEATWSRDSEDQPRETSRDALES---HGSTSSVQSSSPELGIPKQVSFD 212 + K L+PT E C+IC EPA +H+HYG++ CFSC+AFFRR+IQN+ +TC CE+N +RK+CQ CR+ CL VGMK+ WVLS++ER +R + R+ LP+ E + D ED+ E ES H Q+S E+ Q SFD Sbjct: 30 AQAKLLSPT------EKCKICNEPAAKHIHYGAMTCFSCRAFFRRSIQNKTANSYTCRRSQNCEINLRTRKNCQFCRYQKCLSVGMKTNWVLSEEERQRRFRKVRERHEANDLPQ--NHMPEDDYHDDGEDEVEENGGQLPESNSYHEQNGRGQNSYEEVRSILQSSFD 190 HSP 2 Score: 112.464 bits (280), Expect = 1.460e-21 Identity = 65/213 (30.52%), Postives = 120/213 (56.34%), Query Frame = 0 Query: 179 PRETSRDALESHGSTSSVQSSSPELGIPKQVSFDPTEDQFIENITKIYDQQFRSVSLGEVIIKEMIVSSLYNVPISVSSSLSAYRLMVNRVTKIANSFDTFCTFPMRIKMALLKKNADPMVLLNGATFFS--ESAKEQIQVSMGEDDALSSGILIDRSKEAIDKAGSISYWNWNTIQTYHSPDVEDVFSNQLKRLGTLLERNPVLLKLILTWS 389 P E + D E + + + PE + F P E + ++N+ + +++++RSV+ GE +IKEMI S++++P+S ++++ YRL+V R+T+IAN + F + ALLK+NA+ +V L GA FF ++ +Q+ +SMGEDD + + + D I Y +N+IQ ED ++ +++G +L N + ++LT++ Sbjct: 406 PDEMNSDDEEGYVNMNGFYDPQPE------IIFTPDEAEILKNVVESHNERYRSVNFGEELIKEMIFCSMFSIPVSTQAAITGYRLIVERITRIANHQEAFKQLSNEDQGALLKENANLLVSLRGAIFFDSQKNGAQQVMLSMGEDDIQTIENMFSKLLRE-DTMKHIDYKTFNSIQAIGLSPKEDRYNYLQEKVGKVL--NDETISILLTYT 609
BLAST of retinoid x vs. nr
Match: gi|657600356|gb|AID52839.1| (nuclear receptor [Tigriopus japonicus]) HSP 1 Score: 126.331 bits (316), Expect = 6.300e-26 Identity = 56/119 (47.06%), Postives = 80/119 (67.23%), Query Frame = 0 Query: 51 KKLNPTGPVDYPEVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVKRMER-RQSQGMESLPRQVGEACE 168 KK NP + E CR+C EPA RH+HYGS+ CFSC+AFFRR+IQN+ ++C + +CE+ SRK+CQKCR++ CL GMK WVLS++ER +R + R+ + ++ R+ E E Sbjct: 76 KKENPL--ISDTEKCRVCGEPAARHVHYGSVTCFSCRAFFRRSIQNKAWNNYSCRRQGQCEIMLKSRKNCQKCRYEECLSAGMKPTWVLSEEERSRRFRKTREKKARQNSTRKSNEGSE 192 HSP 2 Score: 124.02 bits (310), Expect = 2.890e-25 Identity = 66/186 (35.48%), Postives = 110/186 (59.14%), Query Frame = 0 Query: 204 GIPKQVSFDPTEDQFIE--NITKIYDQQFRSVSLGEVIIKEMIVSSLYNVPISVSSSLSAYRLMVNRVTKIANSFDTFCTFPMRIKMALLKKNADPMVLLNGATFFSESAK--EQIQVSMGEDDALSSGILIDRSKEAIDKAGSISYWNWNTIQTYHSPDVEDVFSNQLKRLGTLLERNPVLLKLI 385 GIP + +ED+ I+ ++ +D+ +RSV+ GE +IKE+++ S++ +P+S + +++AYRLM+ RVTK+A F+ F + ALLK NAD MV L G FF E K +QI S+G DD + ++ + +A G I Y N+N+IQ D E ++ L R+G+++ P L+ ++ Sbjct: 364 GIPLEPQMTVSEDEIIQIRRLSYEHDKFYRSVAFGEELIKELVMCSVFGLPLSPNQAMTAYRLMIQRVTKVAQGFEPFNRLDRHAQKALLKTNADLMVSLRGGVFFDEKKKGIDQILFSLGVDDVDLAKRMLMTTLKATGSLGRIEYKNYNSIQELGDNDTEHRYNALLSRVGSVISLVPELVNVM 549
BLAST of retinoid x vs. nr
Match: gi|657600358|gb|AID52840.1| (nuclear receptor [Tigriopus japonicus]) HSP 1 Score: 114.775 bits (286), Expect = 1.517e-22 Identity = 65/180 (36.11%), Postives = 107/180 (59.44%), Query Frame = 0 Query: 214 TEDQ--FIENITKIYDQQFRSVSLGEVIIKEMIVSSLYNVPISVSSSLSAYRLMVNRVTKIANSFDTFCTFPMRIKMALLKKNADPMVLLNGATFFSES--AKEQIQVSMGEDDA-LSSGILIDRSKEAIDKAGSISYWNWNTIQTYHSPDVEDVFSNQLKRLGTLLERNPVLLKLILTW 388 TED+ ++ + I+D ++SV+ GE ++K ++++S + +P++ S ++ AYRLM+ RVTK+A FD F P+ + LLK NAD MV L GA FF + +QI SMG DD ++ +++ SK A K I Y ++NTIQ + E+ + L ++G ++ P L K +LT+ Sbjct: 303 TEDEVLLLQKLEYIHDHNYQSVAFGEELVKALVMTSAFGIPLTPSQTMMAYRLMIQRVTKVAQGFDEFRDLPLEDQTTLLKSNADLMVSLKGAVFFDKRNMGIDQILFSMGLDDIEMAKRMIMSTSKTAGCKMNRIDYKSYNTIQELNDTPDEERYQWLLAQIGDVITSFPSLTK-VLTY 481 HSP 2 Score: 114.39 bits (285), Expect = 2.166e-22 Identity = 47/92 (51.09%), Postives = 64/92 (69.57%), Query Frame = 0 Query: 63 EVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVKRMERRQSQ 154 E C+ICQ+PA RHLHYG+I CFSCKAFFRR Q++ + F C C + RK C+KCR++ C+RVGMK VLS +E++KR ++ S+ Sbjct: 27 EECQICQDPAIRHLHYGAITCFSCKAFFRRTSQSKAYQKFMCKSTGECNVLHKLRKKCRKCRYEKCIRVGMKPSLVLSDEEKIKRFKKSLSK 118
BLAST of retinoid x vs. nr
Match: gi|675373878|gb|KFM66780.1| (Vitamin D3 receptor B, partial [Stegodyphus mimosarum]) HSP 1 Score: 113.235 bits (282), Expect = 2.747e-22 Identity = 75/252 (29.76%), Postives = 115/252 (45.63%), Query Frame = 0 Query: 63 EVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVK----RMERRQSQGMESLPRQVGEACEATWSRDSEDQPRETSRDALESHGSTSSVQSSSPELG-IPKQVSFDPTEDQFIENITKIYDQQFRSVSLGEVIIKEMIVSSLYNVPISVSSSLSAYRLMVNRVTKIANSFDTFCTFPMRIKMALLKKNADPMVLLNGATFFSE 309 +VC C + A + H+G I C SCKAFFRR++QNE + F C E +CE+ SRK CQ CR+ CL +GM++ WV++++ER++ RMER+Q QG Q E S +P T+S P++ +PK + P + + IE + Y+ + V E + K S I L + V + T + DTF + LL+ + + GA + E Sbjct: 61 KVCGACGDRAKSY-HFGGISCDSCKAFFRRSVQNEAYKNFHCPYEGKCEITITSRKCCQYCRFKKCLSIGMETGWVMTEEERLQLVKNRMERKQRQGASESAHQATE---------SGKKPHR-----------TTSFSEYEPDINDLPKYLG--PEDMRTIETLVNAYEASYTEVPFSEHLHKVGSASGRTRTEI-----LDMFFTTVKQFTNFSQRLDTFSKIQQHDQEILLRTGVLELCFIRGAYVYDE 284
BLAST of retinoid x vs. nr
Match: gi|1238896772|ref|XP_022235203.1| (vitamin D3 receptor-like [Limulus polyphemus]) HSP 1 Score: 111.309 bits (277), Expect = 6.090e-22 Identity = 76/275 (27.64%), Postives = 127/275 (46.18%), Query Frame = 0 Query: 39 PAVSTSVKRGRPKKLNPTGPVDYPEVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERV----KRMERRQSQGMESLPRQVGEACEATWSRDSEDQPRETSRDALESHGSTSSVQSSSPELGIPKQVSFDPTEDQFIENITKIYDQQFRSVSLGEVIIKEMIVSSLYNVPISVSSSLSAYRLMVNRVTKIANSFDTFCTFPMRIKMALLKKNADPMVLLNGATFFSE 309 P S+S G P + + +VC +C + A + H+G I C SCKAFFRR++QNE + F C E +C++ SRK CQ CR+ CL +GM+ WV++++ER+ RME+RQ QG D+PR + S S E+G K ++ + +D IE++ +Y+ +++V E + ++ + S + + + ++ + A + + F P + LL+ M L GA F E Sbjct: 5 PNGSSSSSTGLPAEEASRSFSKHQKVCGVCGDRAKSY-HFGGISCDSCKAFFRRSVQNEGYKNFHCPYEGKCDITISSRKCCQYCRFQKCLAIGMEKGWVMTEEERLHLLRSRMEKRQRQGTT-----------------ESDKPRRKT--------SVSDYDPDINEMG--KFLTENDVQD--IESLITMYEVSYQAVGFSEKL-------TIQSSERSRTEIIDMFFTVIKQFAHFAQNLEGFSVIPHSDQQVLLRSGVMEMCFLRGAYVFDE 242
BLAST of retinoid x vs. nr
Match: gi|657600360|gb|AID52841.1| (nuclear receptor [Tigriopus japonicus]) HSP 1 Score: 112.079 bits (279), Expect = 6.954e-22 Identity = 71/261 (27.20%), Postives = 124/261 (47.51%), Query Frame = 0 Query: 46 KRGRPKKLNPTGPVDYPEVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVKRMERRQSQGMESLPRQVGEACEATWSRDSEDQPRETSRDALESHGSTSSVQSSSPELGIPKQVS-FDPTEDQFIENITKIYDQQFRSVSLGEVIIKEMIVSSLYNVPISVSSSLSAYRLMVNRVTKIANSFDTFCTFPMRIKMALLKKNADPMVLLNGAT 305 +R PK L+ C +C + A H HYG I CFSC+AFFRR++ + +TC+ + C + +RK+CQKCR+D C+ GMK+ WVLS +E+++R+E+++S+ +S V + S S P + D + S +S G P++ E++ IE +V + ++ +++ + + I + + ++ + R+ K D F T K LL KN D + + A+ Sbjct: 113 RRSSPKHLS----------CHVCGDRAPNHCHYGGIACFSCRAFFRRSVPK--YDTYTCSSSSNCVVTPATRKNCQKCRFDKCVEAGMKASWVLSDEEKLERLEKKRSRKGQS---TVSMDSSGSSSPVSSYTPPSSQYDQMSESSEGQSRPASQESFGGPQESRILSYHEERCIEQWVGDLQTTRTTVEMSPQLLDQIVRLTHTHETIDTDTIVEFFKTVYCRIVKFVGEVDGFSTLSDTDKKTLLSKNMDMLSTIQLAS 358
BLAST of retinoid x vs. nr
Match: gi|1238862933|ref|XP_022247713.1| (nuclear hormone receptor HR96-like isoform X1 [Limulus polyphemus] >gi|1238862935|ref|XP_022247714.1| nuclear hormone receptor HR96-like isoform X1 [Limulus polyphemus] >gi|1238862937|ref|XP_013779895.2| nuclear hormone receptor HR96-like isoform X1 [Limulus polyphemus] >gi|1238862939|ref|XP_022247715.1| nuclear hormone receptor HR96-like isoform X1 [Limulus polyphemus] >gi|1238862941|ref|XP_022247716.1| nuclear hormone receptor HR96-like isoform X1 [Limulus polyphemus]) HSP 1 Score: 107.457 bits (267), Expect = 1.509e-20 Identity = 67/251 (26.69%), Postives = 113/251 (45.02%), Query Frame = 0 Query: 63 EVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERV----KRMERRQSQGMESLPRQVGEACEATWSRDSEDQPRETSRDALESHGSTSSVQSSSPELGIPKQVSFDPTEDQFIENITKIYDQQFRSVSLGEVIIKEMIVSSLYNVPISVSSSLSAYRLMVNRVTKIANSFDTFCTFPMRIKMALLKKNADPMVLLNGATFFSE 309 +VC +C + A + H+G I C SCKAFFRR++QNE + F C E +CE+ SRK CQ CR+ C+ +GM+ WV++++ER+ RMER+Q QG + + + + D D + + + + S IE + Y+ ++++S E + + S + L + ++ + + A + + F P R + LL+ M L GA F E Sbjct: 51 KVCGVCGDRAKSY-HFGGISCDSCKAFFRRSVQNEGYKNFHCPYEGKCEITLSSRKCCQYCRFQKCVSIGMEKGWVMTEEERMHLLRSRMERKQRQGTSEPDKPPQKVSISDYDPDINDVGKYLTENDVRS-----------------------------IEILINAYEISYQTISFSEKLTPQTSERSRTEI-------LDMFFTVIKQFSHFAQNLECFSYIPQRDQEVLLRSGVMEMCFLRGAYVFDE 264
BLAST of retinoid x vs. nr
Match: gi|657600348|gb|AID52835.1| (nuclear receptor [Tigriopus japonicus]) HSP 1 Score: 107.457 bits (267), Expect = 1.569e-20 Identity = 66/191 (34.55%), Postives = 98/191 (51.31%), Query Frame = 0 Query: 65 CRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVKRMERRQSQGMESLPRQVGEACEAT-----WSRDSEDQPRETSRD-ALESHGSTSSVQSSSPEL------GIPKQVSFDPTEDQFIENITKIYDQQFRSVSLGEVIIKEM 243 C +C P+ +H +YG+ VCFSC+AFFRR+ N T F C C +NS S K C+ CR+ CL GMKS WVL+ +ERV+R R+ + + R+ G A T W+ D E Q R+ D L+ G + SS+P + + FDP + IY + +S+S +I+K++ Sbjct: 108 CPVCDNPSGKHSYYGAQVCFSCRAFFRRSTINSTFTEFQCKDSKTCGINSKSWKSCKFCRYQKCLSAGMKSTWVLNDEERVQRNANRKR--LRKI-REAGVAFSETFIGNQWTTDEEHQIRQARNDFLLKGFGVIAQFCSSNPNIFDRYVDCLNGNTPFDPMLVGYTRRF--IYSEVMKSIS-DLLIMKDI 292
BLAST of retinoid x vs. nr
Match: gi|1238867475|ref|XP_013781143.2| (vitamin D3 receptor-like [Limulus polyphemus]) HSP 1 Score: 107.071 bits (266), Expect = 1.936e-20 Identity = 75/251 (29.88%), Postives = 116/251 (46.22%), Query Frame = 0 Query: 63 EVCRICQEPATRHLHYGSIVCFSCKAFFRRAIQNEVHTLFTCAVENRCEMNSVSRKHCQKCRWDACLRVGMKSQWVLSKKERVK----RMERRQSQGM--ESLPRQVGEACEATWSRDSEDQPRETSRDALESHGSTSSVQSSSPELGIPKQVSFDPTEDQFIENITKIYDQQFRSVSLGEVIIKEMIVSSLYNVPISVSSSLSAYRLMVNRVTKIANSFDTFCTFPMRIKMALLKKNADPMVLLNGATFF 307 + C +C + A + H+G I C SCKAFFRR++QNE + F C +CE+N SRK CQ CR+ CL +GM+ WV++++ER RMER+Q QG+ + PRQ C H S ELG K ++ D ++ IE I Y+ +++++ + +L S + L + ++ + + A S + F P R + LL+ M L GA F Sbjct: 33 KACGVCGDRAKSY-HFGGISCDSCKAFFRRSVQNEGYRNFHCPYGKKCEINITSRKCCQYCRFQKCLSIGMEKGWVMTEEERQNLLRSRMERKQQQGISQSAKPRQKMNVC---------------------GHDPDIS------ELG--KYLTEDDVQN--IETIINSYEISYQTITFTNKL-------TLQTRERSRTEILDMFFTVIKQFSHFAQSLECFSYIPQRDQEVLLRSGVMEMCFLRGAYVF 244 The following BLAST results are available for this feature:
BLAST of retinoid x vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 23
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BLAST of retinoid x vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 25
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BLAST of retinoid x vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold296_size217904:69141..102945- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>snap_masked-scaffold296_size217904-processed-gene-1.3 ID=snap_masked-scaffold296_size217904-processed-gene-1.3|Name=retinoid x|organism=Tigriopus kingsejongensis|type=gene|length=33805bp|location=Sequence derived from alignment at scaffold296_size217904:69141..102945- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'retinoid x' has the following synonyms
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