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Associated RNAi Experiments
Homology
BLAST of periplasmic solute binding family protein vs. L. salmonis genes
Match: EMLSAG00000009211 (supercontig:LSalAtl2s:LSalAtl2s586:131335:134460:1 gene:EMLSAG00000009211 transcript:EMLSAT00000009211 description:"maker-LSalAtl2s586-snap-gene-1.35") HSP 1 Score: 109.768 bits (273), Expect = 1.091e-28 Identity = 71/226 (31.42%), Postives = 113/226 (50.00%), Query Frame = 0
Query: 44 GTPRVFTSFIFPFFRQYQSIDLGQNLNNLKSPNTMAFFVIRDAVAYLALVTTWILMHTIFWDGRL-KADELDRVPLFIRLLSGFVSGSDSMFRRSDEGGDVPEDEFQTRFGYTDQAEEKLIAESLPEISANGIFNFFADPNPSFRNLIMNSGFLAFQLIIWFLPTFFWPGSPLPTPQNMNQTISSPGEGIGIENPLAQNRVGAFVHNLGEASPVAIHNRLLCPQCF 268
G+ R + FPF Q++ +++G N +KSP + FF+ R + L W+++H +FW G + ++DEL F ++F S++ GD ++E L+ S EI+ N + NF+ DP + +NLI++ GF F L++W +PTFFW G PLPT +N + +S + N + R G + V I+NRLLCPQ F
Sbjct: 13 GSGRSIFPWYFPFLPQWKGVNIGGEFNTIKSPEDVGFFMTRAFSSLLISNIGWLIVHILFWRGTVTRSDELQ-----------FPFNIITLFFGSNDSGD---------------SDELLLPNSEGEINGNDLINFYTDPKVATQNLIISGGFTLFTLLLWIIPTFFWSGRPLPT-KNTDSRVSR------LYNIIDHVRSG--------GNSVDIYNRLLCPQFF 197
BLAST of periplasmic solute binding family protein vs. L. salmonis genes
Match: EMLSAG00000000856 (supercontig:LSalAtl2s:LSalAtl2s1144:10023:12314:1 gene:EMLSAG00000000856 transcript:EMLSAT00000000856 description:"maker-LSalAtl2s1144-snap-gene-0.7") HSP 1 Score: 70.4774 bits (171), Expect = 3.091e-15 Identity = 38/127 (29.92%), Postives = 59/127 (46.46%), Query Frame = 0
Query: 187 RNLIMNSGFLAFQLIIWFLPTFFWPGSPLPTPQNMNQTISSPGEGIGIENPLAQNRVGAFVHNLGEASPVAIHNRLLCPQCFVQTISISTLLYAGKLFWWWWFSSIPDFKRFSIRPSPSTQTQGRHM 313
RNL ++ GF F L++W LPTF W G+PLPT + + H ++ V I+NRL+CPQC + ++I+ L + +W S+ PD F + +T GR +
Sbjct: 5 RNLYLSGGFSFFALVLWLLPTFLWTGTPLPTKSKKRR---------------ESRFINIIKHVRSGSNAVDIYNRLMCPQCVLVVMAINFLALMSRYIFWSVLSASPDLPSFGV-----PKTNGRSL 111
BLAST of periplasmic solute binding family protein vs. L. salmonis genes
Match: EMLSAG00000007317 (supercontig:LSalAtl2s:LSalAtl2s411:13808:14618:-1 gene:EMLSAG00000007317 transcript:EMLSAT00000007317 description:"snap_masked-LSalAtl2s411-processed-gene-0.4") HSP 1 Score: 46.595 bits (109), Expect = 9.273e-7 Identity = 18/37 (48.65%), Postives = 25/37 (67.57%), Query Frame = 0
Query: 187 RNLIMNSGFLAFQLIIWFLPTFFWPGSPLPTPQNMNQ 223
RNL ++ GF F L++W LPTF W G+PLPT + +
Sbjct: 5 RNLYLSGGFSFFALVLWLLPTFLWTGTPLPTNSDKKR 41
The following BLAST results are available for this feature:
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold374_size191929 | supercontig | scaffold374_size191929:25489..32995 - |
Analyses
This gene is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Note | F:metal ion binding |
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold374_size191929:25489..32995- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below. >snap_masked-scaffold374_size191929-processed-gene-0.18 ID=snap_masked-scaffold374_size191929-processed-gene-0.18|Name=periplasmic solute binding family protein|organism=Tigriopus kingsejongensis|type=gene|length=7507bp|location=Sequence derived from alignment at scaffold374_size191929:25489..32995- (Tigriopus kingsejongensis)
ATGAGGCCCAATCTCTGGTTTGGGTGGGCCGGAGTCCTAGTGGTGATAGC
GTTATGCATTGGAGACTCGTGGCAGACAAATAGTACCGATAATGGCACCA
ATCAGGCCGAGCAACCCATACAGACTGAGGGCACGCCCCGAGTGTTCACC
TCCTTCATCTTCCCCTTCTTTCGCCAATATCAATCCATCGACTTGGGGCA
GAATCTCAACAATCTCAAGTCGCCCAACACCATGGCGTTCTTCGTGATCC
GTGATGCCGTTGCAGTAAGTAATCCATGGATCCCTTCTCATTCTCGAATC
TCCGACTCTATCTCCCAATCCCCGTGTTAGTACCTGGCTTTAGTGACCAC
GTGGATCCTAATGCACACCATTTTTTGGGATGGACGACTGAAGGCGGACG
AGTTGGACCGAGTGCCTCTGTTCATTCGCCTGCTTTCTGGCTTCGTCAGT
GGCAGCGACTCCATGTTTCGCCGAAGTGACGAGGGTGGAGACGTTCCTGA
GGATGAGTTCCAAACCCGATTCGGGTACACCGACCAGGCCGAGGAGAAGT
TGATTGCCGAGTCCTTGCCCGAAATCAGCGCCAATGGTATCTTCAACTTT
TTCGCCGATCCCAATCCGTCTTTCCGGAATCTGATCATGAACTCTGGATT
TGTAAGTGGAACCCCTGTTTAATCACGTCTGTCTAGCCTGTGACTCCTCA
AAAATGGCACAGTAATCTTGATACCAAACCGGACTCTGGGAAGTGCACCC
AATGCCTTGTACCACAGGGCTCAGTTCGGGACCAAGCCATTGAGTACGAG
CCACAAAGGAACACACCTGTCTCCAGTTCAGGTCCTTCACTTGGGGATCT
GACTGATTCCCCTCAAAGTGGTTCACGTGATCCTGCTGATGTCATGTACG
TAAATTTGTCTCTCTAATACGTGTTCCAGTGAAGGGCTCATAAAGTGCCT
GTTGGCAGCTTACCGCTGCATCCGCATATGGAACATTTTCTGGACCTTTG
CGGTTGATAACAAAATGGAACTTGACACCGCCACGCGTCTGAAAAGCGAG
GTCAATGTGAGTGTTCCAAACTGGGAATGAAACGGACACAAATCTCATGG
AGCACAAGCTCGTTCAAACCACTTTCCTGCCAGTTGGTACAGACGATTTG
TGTTACGATCGAAGACATATCATTTCAACCCACCGGGGCCAATTATAGCT
GTTCCAATGCGAAATCATCCGCGCCGGAAGGCCCAGCTGTAGTGGAAAAG
CTGGCACATATCCCTAACGCTGACTTTGTTCCCCATTTAGTTGGCATTCC
AATTGATCATTTGGTTCCTGCCCACTTTCTTCTGGCCAGGATCACCACTG
CCCACGCCTCAAAATATGAATCAAACCATCAGCAGTCCTGGTGAAGGTAT
TGGTATCGAGAATCCCTTGGCCCAAAACCGAGTGGGAGCCTTCGTCCACA
ATTTGGGCGAAGCTTCGCCCGTGGCCATTCACAATCGGCTGCTGTGTCCT
CAATGCTTCGTTCAAACCATTTCGATTTCCACGCTATTGGTGAGCCACTT
TCCCAATGTCTTTTGGAACAAGTCAACGTGGTCCAATTGGCTAAAATGGG
TGATTTCTTTGTTTTTCAGTACGCAGGAAAACTCTTCTGGTGGTGGTGGT
TCAGCTCTATCCCGGATTTCAAGCGATTCTCCATCAGGCCCAGCCCGAGC
ACCCAAACCCAAGGCAGGCACATGAGATACGATGACGACGATGACGACTG
GAACTGGACGGACGTTGCTCTCAGTTCAATTCACGAGATTGTCAGTTTTT
CCGAACTTCGAGCTCGACAAGTCTCTTTGGGCTGGAGCTAGTAGTGGTGT
TGTTGCATTTATATAGATGAAATATAACTTTAAGATATGAAAAGAGATCC
AAGGCATCATGCATTGCCTAACTGATTAGATCACAAATGGGGCATTCCTC
ATGAGCTTGGACAAGACGTAGACGGAAATGGCCGAGAGGAAACAGAATCC
CACTGCGATCCAGCCCAAGTAGACCGACCAAGCGATGTGGAACATTCGGG
CCGGGAGAAAGAGGGAAGATATTTGGGCATCCAACATTCCACAATCGTTG
GCATTGGATCGTCGGCGATGTTTGGCAATTGCAAAGGAAAATATGGCAAA
CAAGGCTGCAAAAAACGAGAAAGCAGCCTGAGATTCTGAAGACTCTTTGA
GACCCAATCTGTGATGTTGGCTCCAACTGTAATTTGGATATGTTCTCGTC
TAGGTTTGTCAAGAATCGAACTACGTAATTGACCTTAAATTTTTCTAAGC
TTCATGCTCAAAATTATGTGATGCTGCATTCATGATATTGTTTTAGGTTG
TCTAAACATTTCTCCAGTTTTTATCATACACCTCTGTTGCTCTTTACAGA
TTTATTGACCTGAGAAGTCATTTTCCCTAATAAACAATATATTCATGAAT
GAGTATACTAACTTATGTATTCTCGATAATGAGAAGAAAAAAAGAGTTGA
TCGAGTTCGAGAAATGGGTCGGATGTGCCAAATTACGGACCCAATTTCAT
AGATGTGGTAACATGAAAACCACGTGTAAATATTGTGGTAACGAGGCCCA
ATAAACTGCCCTCTTGTTGAATTTTCCCCGGAGTATCTTGGCCTACATTT
ATGCAATCCATTAAGAGGAGAAATCCTACATCTACGTAATACCGGTACAC
ATTTTCGAGCTGGAGGTTGCTGGGTTCTTTGGCGATTTCAACTGTTAGCC
TTTTAATGGGGAAGAGGATGGATGTGTGACCCTTGCCCATTTAGCACATT
TTTTGATGGCTCTCAGAGGTCATGTTGAAAAGACAGGAATATTGGGAGGC
ACTGTGTCACACCACTTGCCCAGGGGAGCCTGTACAGCAGCTGCCGTGGG
GGTTGGTTCTGGGCAAGGTTAGTTATGTCAAGGGGGCGGTATCAGCCACT
AGATTGGAGGGTACAGTACATCCCCGCCAGTAGCTAGCTACAGTGTTGCA
CAAATTGCCATTCATGATGTTGCCAGATCCATTTTGGGCCAAAAGAGAAC
GGACCACATTAACGTATCTTCTCTATTGTAGCGGGCAGGTTTGCCAGCCT
CAATGAGCTCACGGTCCATGCTGTGGCCATGAAGACTTCACCTGTCAAGA
TGGGCCGGGTGGCTCGAGGAACGCCCTCGGCCAGGTTATCGTCCCCGCCA
ACGTCACCCACGAGGTCGACCAGCTAGTCGGAGGCAGCAGGAGTTGTCTC
ATCGCATCTTCCCTATGCAGCCAACATCCTGGTGGACAACGTAATCGCCC
TGTGGAACAAGTTCCCAACCCTGCGAGAAGCCAATACCAAGCGGAAGGCT
TCGAACGTGGCCCAATTAATATCAAGAGCGGACCCTAGTCGATGTCAGCA
TGCAGTTCTGTTCTTGGTTGATGTTGCTATTGATTTGTATGATTTTTACG
ACGTATGCGATTTATTTATTCTTAAGTGCCTTTTGTGAAGTTTGATATTG
CTGTGTAAACATTTGTTGCGTTTTGTATTGTAATGTGTACTATTATTCTA
TGCTTGGTATAGTTTTGTTTACAACCCTTGTCTGGTTAGGTGGTGTTAAC
ATTTGTTTTGTGTTTATTAGTTCTGTAAACATTTGTTTTATTTGAATAAG
CTCGTAAACATTAATTGTGCTTTCCCATTACTATATTGTGTTGTTTTATT
TTGTATAGTTGGCTGCAACGTTGTGGTGTTTCGATAGTAATGTTTGTTTT
GCGTTACTACTTTATATGTGTATATTCTTAAAAATGGCCCTAACACTATA
CTAGCTAATTTGTGCTAAGTGTTACATCCAGCAAGCGCCATTCTAATAAA
CGATTACACACACACACACTATTGACTAGCATTCGTTGGCTAAGTGTTGA
CTCCCGGGTATAAACCTATTTTAATATGTAGGAACAAACGATTACACCCA
CTGCCCTCATGAGTTATTTGCTTTATCCCATCCCCTCTTAAATCATTCAA
TGTTTCCCATCATAGTTTGACTTCCTCTCCTTCGATGTAAATGGATGTCC
TTCACTAAAGTACGTGCATGTTTTCTCCCGTTGGAATTCCGTCCAACGTA
CTTCTAGACCCTAAATCGTGACCCTAGTGGAGATCACCATGTGGGCTGCC
TTTGCGGGCGAAACTGAGTGCACCTGTGGTCATTCCTTGAGGGTAGGGTA
ACAACTCATGAATGCGGTAAGACTAAGTCTCGTCAGAGATGTCATTTCCG
GACAGAAATGTCCGGGGCCAGCACAACCAACCAATCAACGTATGCACTGT
GTGCGTGTACCTTTACAGAGTACGGATGATCTAGAATTGCCTAGTCTGCG
TATGGAAGCTTGAGACTCATGCACCTGGTCAGCCAGTCAATCCAAGGCAC
TGTGGCTTCTTAACTTGAACATGCCCCTTATGCAGATACCACTACCGGTA
GTTTACGTCGTGACTGGTTCACGTTTTTTCGTGAATCCCAATTGATACAC
CCATTCATTCTCGTTCCTACACCTTCGGCTGAGAAACTGCATTGACGAAT
CGACACAAGTTTATGGTGGGTGTGAAAGATAAAGGAAGATCGCCAGATCT
TTCCAGGATAAGCAAGGGATGAGACCAGATTGATGTCTGCTCTGGAGGAG
TCGATCACCTCGACGGACAATTGAGAAAGTGAAGAAGATTCGATGACAGG
CCGCTGATAAGCCGAATCAATGAGCAAACATCCCAGCCCATTCGATTACT
ACAAATACCATTTGGATTCCGTAGCATCCATTCATGATCATTAAGAGCAA
GCTTACGTAGATCAATCACATCTAGCATATTGTGTAAGAGATACCGAACT
GGTGGGGTCTATTCATGGTGAATGAATTATACAGTATGTACCTTCAAATT
GTTTGTTTATTGTTTGAAAAACTCAAAAGCACAGTGGAGTGCATGAAAGA
GTTAATTTAACCATGTTTGAACACTTACAACAATTGACTTGAAATAATAC
ATGCTTGAATCGATTTAAGCTTGTCGAGACCTTGACATCCATAGGTAGAT
GGTTCCGTAACTTAATACATCGAATGGATATAGGAACTACTATTACAGTA
CATCACGTTCCAAAATTATCTGAAGGTGGCAGTTTTATCTCTTCTAATTA
GAGGAACCAACCCAATGTCTCAGAAAAATGGATTTTGATTTCATGGGTGG
CCAAGTTAAAACAATAACTATGTAGTGCTATAACTAATTAACTATGATAA
CTCTGGAGTTGAGCTTTTTTTTAGCTTTGTCTCAGACTCCAAAGCCAAAT
TAAAACTTCACGATTGAGGCTTATAAACACTCCCAATTGAGATGGTTTTC
TCCGTGCCATTCACAGATATGACGTTTAGACAAATTCCATCAATAAACTT
GTCATCAAGACATTCTAATCCAACCTTCTCGAAAATGCTTCATCACATTT
TTCTCGCCATTGCATGTCATCACGGGATCTTACGAAGAGCTTCCCTGCCC
GAAGAACTCTGAAACCTGGAAATACTGCTACTCTCTGCTGCACCTGCTCC
AAAGGAGTCCAACTGGTTTGAGTTTCGGTCAGTATTGCCATTTTTGTCTT
CAAAGGGCCAAATGTAGCAAATCTAGCGCTCATCAGCAATGATCGACAGT
CCCAAACAAACTGCCTGCATATTGGACATGCCCTGGTTTCAATGTTCCTT
GCCCTCGTGGAACTCACCTGACAATATGTAAAGTACGCTCACAACGAGAA
CCGGTGGAACTTGACGCTCGATGAGACCAATCCAGAACACCACCAAGCTG
GCCAGAAGAAGGATGAGACAGACGACAGAGCAGGAAATGCTCAGATTTTG
CATGCCTAGAAGAAGGAGCTCGTGTGTAGTACAGGGTTTCTGACGACGAA
TGAGGCGGGGGAAGCTCGGGAATCATGAACGAGTAAGTAAATTGATTGCT
TGTCGTACATCGCCCAACCAAAGTAAGTTCCATGGCGCTGACATGGCACA
CATGGCGTGCCACTCCCGACCAAGATTGTTGAGAATGTGTCACAAATGCG
GTGACGAGGGCAGTGGTCCAATTCGAACGTGTGGAGCTAGCTCGTTGGTT
CTGGATACATTGTTTATGGTCAAGGGGAGCACTGCTTTCCATGTTGTACT
CTGGCATGTCAAAATCGAACCTGTGTAACGTGTCAACTGAGGGGCTGTTG
AGGTCTCTCTTGGCCTGGCCCAACAGTAACAAAAGCAGACAGGAGCACGT
CAATGATTAATGGTTCCACTCGGTGGACCAAATCAGGGCCGCCGAACGAT
TTCAAATTCATCAAGGCGACTAATGATTGCGGCTTAATGATCATGGCCAC
CATAGGAAGTTGATTAAAATCCTTTTCCGAGAGGTCGTACACATGATGTA
CAGTACACATTAATGCCTGAGAAAGCACCCAACCTTGCAACCCTAAAACC
AATCCCCAAGAAAGGTCATGTTACTCCCAGCCCTGAAGCATTTTCCCCCT
TGGCAGCTTGACAAAAGGTGACAAAACGGCATAAACCCAGCCATCCGTTA
GGACAGGAACACTTACGCATTTGACGAGAATTCGTCCCCAGGAGGGAATG
ATCAATGTATTTTTCCTGCTCCTTCAAGCTATCCAGGCAACGAGGGTCCG
TGGTGTTGGGATACATCTCCTCCATTTGAGCCACCTCAGAGGCTGGAAGA
ATGATAAAAGTAGTCAAAGTTAAGTAGTTCAACTTAGCCTGTTGTTCCAG
CTCCCTCTAAAACGAGCTGAAATCGGGTCAACATATCTACTGTATGTAGG
TGTTTCAAACTGGGTGAACTTTGTTACCTGAGTGCCTGAATTTGTTAACG
CATCATGTTGCCATGCATCGCAACAAGGTGCAGGTTCATTAAGGCTTACT
GCTCCGCGAAAATGGCCAATTTCCACTTTTGGAATTTGCACTCCGGAGAA
GATTTTGTTTTTACTATGGTTTTCCAACAAGAGTGGGCTCTACTCTACAG
ATTCAGGTTTTCAATGACTACCCAATGGGTGGACTGTTGTCCTAAAGATC
AAAAGTTGAAATCATTTTTCAGACCCCCTTGAGCCATGTCATCAGATGGA
GACAAATGGTCACATCACTCCTGCCTACACTGTAGCAATTTAGCAAGTCT
GTACAGTATCTGACCGGGAAGGGTGCGCTAGTCGAGCCCGGATTCAGACT
AGTTCATTTTCAGTGAGGGAGCTGAGGAACCCCAGTTTGGAATGGGTAGA
ATGGCCTGGTATACCCATGGTGCGTTATGCCTATGTGTATGAAGTACATA
GATCTCACCCGACAAATCCCAGCACACCGACCACAGACCTCCGTGCAGTT
GTATGAGGAAATCCGTTTGGCTCTGCTCTCCGTCGGCTCGGGTTACAATG
AGTGCTCGGCCCTCGAAGAGTTCGTCCACGGTGGCATTGCTCTGGAGGCC
GTCCAAGAGCTGGTCCAGTATCTCTCTGGAGTAGTGGATGATTTCCCAAT
AGTCTGA back to top
Synonyms
The feature 'periplasmic solute binding family protein' has the following synonyms
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