EMLSAG00000011076, EMLSAG00000011076-693842 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000011076
Unique NameEMLSAG00000011076-693842
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000011076 vs. GO
Match: - (symbol:sptssa "Serine palmitoyltransferase small subunit A" species:8030 "Salmo salar" [GO:0017059 "serine C-palmitoyltransferase complex" evidence=ISS] [GO:0004758 "serine C-palmitoyltransferase activity" evidence=ISS] UniPathway:UPA00222 GO:GO:0016021 GO:GO:0006665 GO:GO:0017059 InterPro:IPR024512 Pfam:PF11779 CTD:171546 EMBL:BT057114 RefSeq:NP_001139976.1 UniGene:Ssa.14932 GeneID:100286565 Uniprot:B9EN89)

HSP 1 Score: 51.2174 bits (121), Expect = 7.608e-9
Identity = 18/55 (32.73%), Postives = 39/55 (70.91%), Query Frame = 0
Query:    2 EKLRALHREYELNTAVYLLEPWEKRIVNSVFLALGSLALYSAFTYLPHYASSLIH 56
            +K+  L+ +Y L TA+Y+LEPWE+ I NS+ +++  +A+Y+ + ++P +  +++ 
Sbjct:    8 KKISWLYYQYILVTALYMLEPWERAIFNSILISVAGMAVYTGYVFMPQHIMAILQ 62          
BLAST of EMLSAG00000011076 vs. GO
Match: - (symbol:sptssa "serine palmitoyltransferase, small subunit A" species:7955 "Danio rerio" [GO:0004758 "serine C-palmitoyltransferase activity" evidence=ISS] [GO:0017059 "serine C-palmitoyltransferase complex" evidence=ISS] [GO:0006665 "sphingolipid metabolic process" evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0006629 "lipid metabolic process" evidence=IEA] [GO:0016021 "integral component of membrane" evidence=IEA] UniPathway:UPA00222 ZFIN:ZDB-GENE-050320-26 GO:GO:0016021 GO:GO:0006665 GO:GO:0017059 InterPro:IPR024512 Pfam:PF11779 CTD:171546 eggNOG:NOG39051 GeneTree:ENSGT00390000002766 HOGENOM:HOG000154434 OMA:KQLSWFY OrthoDB:EOG74TX25 TreeFam:TF328418 EMBL:BC091542 RefSeq:NP_001087196.1 UniGene:Dr.17290 STRING:7955.ENSDARP00000095888 Ensembl:ENSDART00000105117 GeneID:541337 KEGG:dre:541337 InParanoid:Q5BJC1 NextBio:20879153 PRO:PR:Q5BJC1 Bgee:Q5BJC1 Uniprot:Q5BJC1)

HSP 1 Score: 51.2174 bits (121), Expect = 8.611e-9
Identity = 18/55 (32.73%), Postives = 40/55 (72.73%), Query Frame = 0
Query:    2 EKLRALHREYELNTAVYLLEPWEKRIVNSVFLALGSLALYSAFTYLPHYASSLIH 56
            ++L   + +Y L TA+Y+LEPWE+ I NS+ +++ ++A+Y+ + ++P +  +++H
Sbjct:    8 KQLSWFYYQYLLVTALYMLEPWERTIFNSLLISVAAMAVYTGYVFMPQHIMAILH 62          
BLAST of EMLSAG00000011076 vs. GO
Match: - (symbol:SPTSSA "Uncharacterized protein" species:9031 "Gallus gallus" [GO:0004758 "serine C-palmitoyltransferase activity" evidence=IEA] [GO:0017059 "serine C-palmitoyltransferase complex" evidence=IEA] InterPro:IPR024512 Pfam:PF11779 CTD:171546 GeneTree:ENSGT00390000002766 OMA:KQLSWFY EMBL:AADN03004576 RefSeq:XP_421234.2 UniGene:Gga.12647 Ensembl:ENSGALT00000043316 GeneID:423318 KEGG:gga:423318 Uniprot:R4GJA8)

HSP 1 Score: 50.8322 bits (120), Expect = 8.882e-9
Identity = 18/55 (32.73%), Postives = 40/55 (72.73%), Query Frame = 0
Query:    2 EKLRALHREYELNTAVYLLEPWEKRIVNSVFLALGSLALYSAFTYLPHYASSLIH 56
            +++  L+ +Y L TA+Y+LEPWE+ + NS+ +++  +ALY+ + ++P +  +++H
Sbjct:    8 KQMSWLYYQYLLVTALYMLEPWERTVFNSMLVSIVGMALYTGYVFMPQHIMAILH 62          
BLAST of EMLSAG00000011076 vs. GO
Match: - (symbol:SPTSSA "Serine palmitoyltransferase small subunit A" species:9606 "Homo sapiens" [GO:0005515 "protein binding" evidence=IPI] [GO:0016021 "integral component of membrane" evidence=IEA] [GO:0017059 "serine C-palmitoyltransferase complex" evidence=IDA] [GO:0030148 "sphingolipid biosynthetic process" evidence=TAS] [GO:0004758 "serine C-palmitoyltransferase activity" evidence=IDA] UniPathway:UPA00222 GO:GO:0016021 EMBL:CH471078 GO:GO:0030148 GO:GO:0017059 InterPro:IPR024512 Pfam:PF11779 CTD:171546 eggNOG:NOG39051 HOGENOM:HOG000154434 OMA:KQLSWFY OrthoDB:EOG74TX25 TreeFam:TF328418 EMBL:AK315409 EMBL:BC016805 EMBL:BC016808 EMBL:BC021701 EMBL:BC068480 RefSeq:NP_612145.2 UniGene:Hs.740577 ProteinModelPortal:Q969W0 BioGrid:128143 IntAct:Q969W0 MINT:MINT-1415186 STRING:9606.ENSP00000298130 DMDM:238054261 PaxDb:Q969W0 PRIDE:Q969W0 DNASU:171546 Ensembl:ENST00000298130 GeneID:171546 KEGG:hsa:171546 UCSC:uc001wsc.3 GeneCards:GC14M034902 HGNC:HGNC:20361 MIM:613540 neXtProt:NX_Q969W0 PharmGKB:PA128394765 InParanoid:Q969W0 BioCyc:MetaCyc:MONOMER66-34371 GenomeRNAi:171546 NextBio:89285 PRO:PR:Q969W0 Bgee:Q969W0 CleanEx:HS_C14orf147 Genevestigator:Q969W0 Uniprot:Q969W0)

HSP 1 Score: 49.6766 bits (117), Expect = 2.674e-8
Identity = 17/55 (30.91%), Postives = 39/55 (70.91%), Query Frame = 0
Query:    2 EKLRALHREYELNTAVYLLEPWEKRIVNSVFLALGSLALYSAFTYLPHYASSLIH 56
            +++   + +Y L TA+Y+LEPWE+ + NS+ +++  +ALY+ + ++P +  +++H
Sbjct:   11 KQMSWFYYQYLLVTALYMLEPWERTVFNSMLVSIVGMALYTGYVFMPQHIMAILH 65          
BLAST of EMLSAG00000011076 vs. GO
Match: - (symbol:SPTSSA "Serine palmitoyltransferase small subunit A" species:9913 "Bos taurus" [GO:0006665 "sphingolipid metabolic process" evidence=IEA] [GO:0016021 "integral component of membrane" evidence=IEA] [GO:0017059 "serine C-palmitoyltransferase complex" evidence=ISS] [GO:0004758 "serine C-palmitoyltransferase activity" evidence=ISS] UniPathway:UPA00222 GO:GO:0016021 GO:GO:0006665 GO:GO:0004758 GO:GO:0017059 InterPro:IPR024512 Pfam:PF11779 EMBL:BT021042 EMBL:BC134492 RefSeq:NP_001181971.1 UniGene:Bt.58804 Ensembl:ENSBTAT00000018578 GeneID:615641 KEGG:bta:615641 CTD:171546 eggNOG:NOG39051 GeneTree:ENSGT00390000002766 HOGENOM:HOG000154434 InParanoid:Q5E978 OMA:KQLSWFY OrthoDB:EOG74TX25 TreeFam:TF328418 NextBio:20899712 Uniprot:Q5E978)

HSP 1 Score: 49.6766 bits (117), Expect = 2.758e-8
Identity = 17/55 (30.91%), Postives = 39/55 (70.91%), Query Frame = 0
Query:    2 EKLRALHREYELNTAVYLLEPWEKRIVNSVFLALGSLALYSAFTYLPHYASSLIH 56
            +++   + +Y L TA+Y+LEPWE+ + NS+ +++  +ALY+ + ++P +  +++H
Sbjct:    8 KQMSWFYYQYLLVTALYMLEPWERTVFNSMLVSIVGMALYTGYVFMPQHIMAILH 62          
BLAST of EMLSAG00000011076 vs. GO
Match: - (symbol:SPTSSA "Uncharacterized protein" species:9823 "Sus scrofa" [GO:0004758 "serine C-palmitoyltransferase activity" evidence=IEA] [GO:0017059 "serine C-palmitoyltransferase complex" evidence=IEA] GO:GO:0008152 GO:GO:0004758 GO:GO:0017059 InterPro:IPR024512 Pfam:PF11779 GeneTree:ENSGT00390000002766 OMA:KQLSWFY OrthoDB:EOG74TX25 TreeFam:TF328418 EMBL:CU304973 Ensembl:ENSSSCT00000026165 Uniprot:F1SHH2)

HSP 1 Score: 49.6766 bits (117), Expect = 3.025e-8
Identity = 17/55 (30.91%), Postives = 39/55 (70.91%), Query Frame = 0
Query:    2 EKLRALHREYELNTAVYLLEPWEKRIVNSVFLALGSLALYSAFTYLPHYASSLIH 56
            +++   + +Y L TA+Y+LEPWE+ + NS+ +++  +ALY+ + ++P +  +++H
Sbjct:   11 KQMSWFYYQYLLVTALYMLEPWERTVFNSMLVSIVGMALYTGYVFMPQHIMAILH 65          
BLAST of EMLSAG00000011076 vs. GO
Match: - (symbol:Sptssa "Serine palmitoyltransferase small subunit A" species:10116 "Rattus norvegicus" [GO:0006665 "sphingolipid metabolic process" evidence=IEA] [GO:0016021 "integral component of membrane" evidence=IEA] [GO:0017059 "serine C-palmitoyltransferase complex" evidence=ISS] [GO:0004758 "serine C-palmitoyltransferase activity" evidence=ISS] UniPathway:UPA00222 RGD:1565821 GO:GO:0016021 GO:GO:0006665 GO:GO:0004758 GO:GO:0017059 InterPro:IPR024512 Pfam:PF11779 CTD:171546 eggNOG:NOG39051 GeneTree:ENSGT00390000002766 HOGENOM:HOG000154434 OMA:KQLSWFY OrthoDB:EOG74TX25 TreeFam:TF328418 EMBL:BC098829 RefSeq:NP_001041208.1 UniGene:Rn.203250 STRING:10116.ENSRNOP00000005825 Ensembl:ENSRNOT00000005825 GeneID:500651 KEGG:rno:500651 UCSC:RGD:1565821 InParanoid:Q4G019 NextBio:706870 Genevestigator:Q4G019 Uniprot:Q4G019)

HSP 1 Score: 49.2914 bits (116), Expect = 3.637e-8
Identity = 17/55 (30.91%), Postives = 39/55 (70.91%), Query Frame = 0
Query:    2 EKLRALHREYELNTAVYLLEPWEKRIVNSVFLALGSLALYSAFTYLPHYASSLIH 56
            +++   + +Y L TA+Y+LEPWE+ + NS+ +++  +ALY+ + ++P +  +++H
Sbjct:   11 KQMSWFYYQYLLVTALYMLEPWERTVFNSMLVSVVGMALYTGYVFMPQHIMAILH 65          
BLAST of EMLSAG00000011076 vs. GO
Match: - (symbol:Sptssa "serine palmitoyltransferase, small subunit A" species:10116 "Rattus norvegicus" [GO:0004758 "serine C-palmitoyltransferase activity" evidence=ISO;ISS] [GO:0006665 "sphingolipid metabolic process" evidence=IEA] [GO:0016021 "integral component of membrane" evidence=IEA] [GO:0017059 "serine C-palmitoyltransferase complex" evidence=ISO;ISS] UniPathway:UPA00222 RGD:1565821 GO:GO:0016021 GO:GO:0006665 GO:GO:0004758 GO:GO:0017059 InterPro:IPR024512 Pfam:PF11779 CTD:171546 eggNOG:NOG39051 GeneTree:ENSGT00390000002766 HOGENOM:HOG000154434 OMA:KQLSWFY OrthoDB:EOG74TX25 TreeFam:TF328418 EMBL:BC098829 RefSeq:NP_001041208.1 UniGene:Rn.203250 STRING:10116.ENSRNOP00000005825 Ensembl:ENSRNOT00000005825 GeneID:500651 KEGG:rno:500651 UCSC:RGD:1565821 InParanoid:Q4G019 NextBio:706870 Genevestigator:Q4G019 Uniprot:Q4G019)

HSP 1 Score: 49.2914 bits (116), Expect = 3.637e-8
Identity = 17/55 (30.91%), Postives = 39/55 (70.91%), Query Frame = 0
Query:    2 EKLRALHREYELNTAVYLLEPWEKRIVNSVFLALGSLALYSAFTYLPHYASSLIH 56
            +++   + +Y L TA+Y+LEPWE+ + NS+ +++  +ALY+ + ++P +  +++H
Sbjct:   11 KQMSWFYYQYLLVTALYMLEPWERTVFNSMLVSVVGMALYTGYVFMPQHIMAILH 65          
BLAST of EMLSAG00000011076 vs. GO
Match: - (symbol:Sptssa "serine palmitoyltransferase, small subunit A" species:10090 "Mus musculus" [GO:0004758 "serine C-palmitoyltransferase activity" evidence=ISO] [GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0006629 "lipid metabolic process" evidence=IEA] [GO:0006665 "sphingolipid metabolic process" evidence=IEA] [GO:0008150 "biological_process" evidence=ND] [GO:0016020 "membrane" evidence=IEA] [GO:0016021 "integral component of membrane" evidence=IEA] [GO:0017059 "serine C-palmitoyltransferase complex" evidence=ISO] UniPathway:UPA00222 MGI:MGI:1913399 GO:GO:0016021 GO:GO:0006665 GO:GO:0004758 GO:GO:0017059 InterPro:IPR024512 Pfam:PF11779 CTD:171546 eggNOG:NOG39051 GeneTree:ENSGT00390000002766 HOGENOM:HOG000154434 OMA:KQLSWFY OrthoDB:EOG74TX25 TreeFam:TF328418 EMBL:AK003171 EMBL:AK003275 EMBL:AK008904 EMBL:AK018380 EMBL:BC022674 RefSeq:NP_598815.2 UniGene:Mm.485026 PRIDE:Q8R207 Ensembl:ENSMUST00000056228 GeneID:104725 KEGG:mmu:104725 UCSC:uc007nnt.1 InParanoid:Q8R207 NextBio:357240 PRO:PR:Q8R207 Bgee:Q8R207 CleanEx:MM_1110002B05RIK Genevestigator:Q8R207 Uniprot:Q8R207)

HSP 1 Score: 49.2914 bits (116), Expect = 3.637e-8
Identity = 17/55 (30.91%), Postives = 39/55 (70.91%), Query Frame = 0
Query:    2 EKLRALHREYELNTAVYLLEPWEKRIVNSVFLALGSLALYSAFTYLPHYASSLIH 56
            +++   + +Y L TA+Y+LEPWE+ + NS+ +++  +ALY+ + ++P +  +++H
Sbjct:   11 KQMSWFYYQYLLVTALYMLEPWERTVFNSMLVSVVGMALYTGYVFMPQHIMAILH 65          
BLAST of EMLSAG00000011076 vs. GO
Match: - (symbol:sptssa "Serine palmitoyltransferase small subunit A" species:8364 "Xenopus (Silurana) tropicalis" [GO:0017059 "serine C-palmitoyltransferase complex" evidence=ISS] [GO:0004758 "serine C-palmitoyltransferase activity" evidence=ISS] UniPathway:UPA00222 GO:GO:0016021 GO:GO:0006665 GO:GO:0017059 InterPro:IPR024512 Pfam:PF11779 CTD:171546 eggNOG:NOG39051 HOGENOM:HOG000154434 EMBL:BC076647 RefSeq:NP_001005001.1 UniGene:Str.8281 STRING:8364.ENSXETP00000053478 GeneID:448487 KEGG:xtr:448487 Xenbase:XB-GENE-949952 InParanoid:Q6DFT6 Uniprot:Q6DFT6)

HSP 1 Score: 48.9062 bits (115), Expect = 6.376e-8
Identity = 19/50 (38.00%), Postives = 37/50 (74.00%), Query Frame = 0
Query:    7 LHREYELNTAVYLLEPWEKRIVNSVFLALGSLALYSAFTYLPHYASSLIH 56
            L+ +Y L TA+Y+LEPWE+ I NS+ +++  +ALY+ + ++P +  +++H
Sbjct:   25 LYYQYLLVTALYMLEPWERTIFNSMLVSIVGMALYTGYIFMPQHILAILH 74          
BLAST of EMLSAG00000011076 vs. C. finmarchicus
Match: gi|592779309|gb|GAXK01175259.1| (TSA: Calanus finmarchicus comp2291_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 4.069e+0
Identity = 15/51 (29.41%), Postives = 28/51 (54.90%), Query Frame = 0
Query:    7 LHREYELNTAVYLLEPWEKRIVNSVFLALGSLALYSAFTYLPHYASSLIHC 57
            LHR + + + +   +PW+K   NS+ L++   ++     + PH   SL+HC
Sbjct: 1289 LHRRFFVFSLLL*KQPWKK---NSILLSMF*RSVLLCPYHTPHQLQSLLHC 1432          
BLAST of EMLSAG00000011076 vs. C. finmarchicus
Match: gi|592798825|gb|GAXK01155743.1| (TSA: Calanus finmarchicus comp104037_c5_seq3 transcribed RNA sequence)

HSP 1 Score: 26.1794 bits (56), Expect = 8.162e+0
Identity = 12/25 (48.00%), Postives = 15/25 (60.00%), Query Frame = 0
Query:   34 ALGSLALYSAFTYLPHYASSLIHCL 58
            AL  L L    TYLP+Y  ++I CL
Sbjct:  602 ALAELLLVVDGTYLPNYLHAIISCL 676          
BLAST of EMLSAG00000011076 vs. L. salmonis peptides
Match: EMLSAP00000011076 (pep:novel supercontig:LSalAtl2s:LSalAtl2s749:77862:78041:1 gene:EMLSAG00000011076 transcript:EMLSAT00000011076 description:"snap_masked-LSalAtl2s749-processed-gene-0.2")

HSP 1 Score: 119.783 bits (299), Expect = 4.338e-37
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0
Query:    1 MEKLRALHREYELNTAVYLLEPWEKRIVNSVFLALGSLALYSAFTYLPHYASSLIHCLI 59
            MEKLRALHREYELNTAVYLLEPWEKRIVNSVFLALGSLALYSAFTYLPHYASSLIHCLI
Sbjct:    1 MEKLRALHREYELNTAVYLLEPWEKRIVNSVFLALGSLALYSAFTYLPHYASSLIHCLI 59          
BLAST of EMLSAG00000011076 vs. SwissProt
Match: gi|251765089|sp|B9EN89.1|SPTSA_SALSA (RecName: Full=Serine palmitoyltransferase small subunit A; AltName: Full=Small subunit of serine palmitoyltransferase A; Short=ssSPTa)

HSP 1 Score: 51.2174 bits (121), Expect = 1.258e-9
Identity = 18/55 (32.73%), Postives = 39/55 (70.91%), Query Frame = 0
Query:    2 EKLRALHREYELNTAVYLLEPWEKRIVNSVFLALGSLALYSAFTYLPHYASSLIH 56
            +K+  L+ +Y L TA+Y+LEPWE+ I NS+ +++  +A+Y+ + ++P +  +++ 
Sbjct:    8 KKISWLYYQYILVTALYMLEPWERAIFNSILISVAGMAVYTGYVFMPQHIMAILQ 62          
BLAST of EMLSAG00000011076 vs. SwissProt
Match: gi|82178557|sp|Q5BJC1.1|SPTSA_DANRE (RecName: Full=Serine palmitoyltransferase small subunit A; AltName: Full=Small subunit of serine palmitoyltransferase A; Short=ssSPTa)

HSP 1 Score: 51.2174 bits (121), Expect = 1.435e-9
Identity = 18/55 (32.73%), Postives = 40/55 (72.73%), Query Frame = 0
Query:    2 EKLRALHREYELNTAVYLLEPWEKRIVNSVFLALGSLALYSAFTYLPHYASSLIH 56
            ++L   + +Y L TA+Y+LEPWE+ I NS+ +++ ++A+Y+ + ++P +  +++H
Sbjct:    8 KQLSWFYYQYLLVTALYMLEPWERTIFNSLLISVAAMAVYTGYVFMPQHIMAILH 62          
BLAST of EMLSAG00000011076 vs. SwissProt
Match: gi|238054261|sp|Q969W0.2|SPTSA_HUMAN (RecName: Full=Serine palmitoyltransferase small subunit A; AltName: Full=Small subunit of serine palmitoyltransferase A; Short=ssSPTa)

HSP 1 Score: 49.6766 bits (117), Expect = 4.903e-9
Identity = 17/55 (30.91%), Postives = 39/55 (70.91%), Query Frame = 0
Query:    2 EKLRALHREYELNTAVYLLEPWEKRIVNSVFLALGSLALYSAFTYLPHYASSLIH 56
            +++   + +Y L TA+Y+LEPWE+ + NS+ +++  +ALY+ + ++P +  +++H
Sbjct:   11 KQMSWFYYQYLLVTALYMLEPWERTVFNSMLVSIVGMALYTGYVFMPQHIMAILH 65          
BLAST of EMLSAG00000011076 vs. SwissProt
Match: gi|68565109|sp|Q5E978.1|SPTSA_BOVIN (RecName: Full=Serine palmitoyltransferase small subunit A; AltName: Full=Small subunit of serine palmitoyltransferase A; Short=ssSPTa)

HSP 1 Score: 49.6766 bits (117), Expect = 4.940e-9
Identity = 17/55 (30.91%), Postives = 39/55 (70.91%), Query Frame = 0
Query:    2 EKLRALHREYELNTAVYLLEPWEKRIVNSVFLALGSLALYSAFTYLPHYASSLIH 56
            +++   + +Y L TA+Y+LEPWE+ + NS+ +++  +ALY+ + ++P +  +++H
Sbjct:    8 KQMSWFYYQYLLVTALYMLEPWERTVFNSMLVSIVGMALYTGYVFMPQHIMAILH 62          
BLAST of EMLSAG00000011076 vs. SwissProt
Match: gi|238054262|sp|Q8R207.2|SPTSA_MOUSE (RecName: Full=Serine palmitoyltransferase small subunit A; AltName: Full=Small subunit of serine palmitoyltransferase A; Short=ssSPTa >gi|238054263|sp|Q4G019.2|SPTSA_RAT RecName: Full=Serine palmitoyltransferase small subunit A; AltName: Full=Small subunit of serine palmitoyltransferase A; Short=ssSPTa)

HSP 1 Score: 49.2914 bits (116), Expect = 6.806e-9
Identity = 17/55 (30.91%), Postives = 39/55 (70.91%), Query Frame = 0
Query:    2 EKLRALHREYELNTAVYLLEPWEKRIVNSVFLALGSLALYSAFTYLPHYASSLIH 56
            +++   + +Y L TA+Y+LEPWE+ + NS+ +++  +ALY+ + ++P +  +++H
Sbjct:   11 KQMSWFYYQYLLVTALYMLEPWERTVFNSMLVSVVGMALYTGYVFMPQHIMAILH 65          
BLAST of EMLSAG00000011076 vs. SwissProt
Match: gi|82182959|sp|Q6DFT6.1|SPTSA_XENTR (RecName: Full=Serine palmitoyltransferase small subunit A; AltName: Full=Small subunit of serine palmitoyltransferase A; Short=ssSPTa)

HSP 1 Score: 48.9062 bits (115), Expect = 1.350e-8
Identity = 19/50 (38.00%), Postives = 37/50 (74.00%), Query Frame = 0
Query:    7 LHREYELNTAVYLLEPWEKRIVNSVFLALGSLALYSAFTYLPHYASSLIH 56
            L+ +Y L TA+Y+LEPWE+ I NS+ +++  +ALY+ + ++P +  +++H
Sbjct:   25 LYYQYLLVTALYMLEPWERTIFNSMLVSIVGMALYTGYIFMPQHILAILH 74          
BLAST of EMLSAG00000011076 vs. SwissProt
Match: gi|82181328|sp|Q66J44.1|SPSAA_XENLA (RecName: Full=Serine palmitoyltransferase small subunit A-A; AltName: Full=Small subunit of serine palmitoyltransferase A-A; Short=ssSPTa-A)

HSP 1 Score: 48.521 bits (114), Expect = 1.978e-8
Identity = 18/50 (36.00%), Postives = 37/50 (74.00%), Query Frame = 0
Query:    7 LHREYELNTAVYLLEPWEKRIVNSVFLALGSLALYSAFTYLPHYASSLIH 56
            L+ +Y L TA+Y+LEPWE+ + NS+ +++  +ALY+ + ++P +  +++H
Sbjct:   25 LYYQYLLVTALYMLEPWERTVFNSMLVSIVGMALYTGYIFMPQHILAILH 74          
BLAST of EMLSAG00000011076 vs. SwissProt
Match: gi|82184530|sp|Q6GPZ5.1|SPSAB_XENLA (RecName: Full=Serine palmitoyltransferase small subunit A-B; AltName: Full=Small subunit of serine palmitoyltransferase A-B; Short=ssSPTa-B)

HSP 1 Score: 48.1358 bits (113), Expect = 2.355e-8
Identity = 18/50 (36.00%), Postives = 37/50 (74.00%), Query Frame = 0
Query:    7 LHREYELNTAVYLLEPWEKRIVNSVFLALGSLALYSAFTYLPHYASSLIH 56
            L+ +Y L TA+Y+LEPWE+ + NS+ +++  +ALY+ + ++P +  +++H
Sbjct:   25 LYYQYLLVTALYMLEPWERTVFNSMLVSIVGMALYTGYIFMPQHILAILH 74          
BLAST of EMLSAG00000011076 vs. SwissProt
Match: gi|123889696|sp|Q1RLT2.1|SPTSB_DANRE (RecName: Full=Serine palmitoyltransferase small subunit B; AltName: Full=Protein ADMP; AltName: Full=Small subunit of serine palmitoyltransferase B; Short=ssSPTb)

HSP 1 Score: 44.2838 bits (103), Expect = 9.365e-7
Identity = 16/47 (34.04%), Postives = 32/47 (68.09%), Query Frame = 0
Query:    2 EKLRALHREYELNTAVYLLEPWEKRIVNSVFLALGSLALYSAFTYLP 48
            E +  L+ +Y L T +Y+LEPWE+ I N+V   + ++ +Y+++ ++P
Sbjct:    8 EYMSWLYYQYLLITGIYVLEPWEQSIFNTVLFTMVAMVIYTSYVFVP 54          
BLAST of EMLSAG00000011076 vs. Select Arthropod Genomes
Match: EAU76955.1 (AGAP004153-PA [Anopheles gambiae str. PEST])

HSP 1 Score: 56.6102 bits (135), Expect = 5.970e-12
Identity = 22/49 (44.90%), Postives = 35/49 (71.43%), Query Frame = 0
Query:   11 YELNTAVYLLEPWEKRIVNSVFLALGSLALYSAFTYLPHYASSLIHCLI 59
            YELNT +Y+L+PWEKR VN+   A+  L ++S++T+LP Y   L++  +
Sbjct:   16 YELNTCIYMLDPWEKRFVNAFIFAILGLLIFSSYTFLPGYTRKLVNAFL 64          
BLAST of EMLSAG00000011076 vs. Select Arthropod Genomes
Match: AHN57556.1 (uncharacterized protein Dmel_CG34293, isoform B [Drosophila melanogaster])

HSP 1 Score: 46.9802 bits (110), Expect = 4.224e-8
Identity = 24/49 (48.98%), Postives = 36/49 (73.47%), Query Frame = 0
Query:    8 HREYELNTAVYLLEPWEKRIVNSVFLALGSLALYSAFTYLPHYASSLIH 56
            +R+YEL T V +LEPWEK+++N  FL +  L L+S+F YLP+Y  +L+ 
Sbjct:   12 YRQYELVTCVNMLEPWEKKLINGFFLVMLLLVLFSSFMYLPNYMQTLMQ 60          
BLAST of EMLSAG00000011076 vs. Select Arthropod Genomes
Match: ABW08783.1 (uncharacterized protein Dmel_CG34293, isoform A [Drosophila melanogaster])

HSP 1 Score: 46.9802 bits (110), Expect = 4.224e-8
Identity = 24/49 (48.98%), Postives = 36/49 (73.47%), Query Frame = 0
Query:    8 HREYELNTAVYLLEPWEKRIVNSVFLALGSLALYSAFTYLPHYASSLIH 56
            +R+YEL T V +LEPWEK+++N  FL +  L L+S+F YLP+Y  +L+ 
Sbjct:   12 YRQYELVTCVNMLEPWEKKLINGFFLVMLLLVLFSSFMYLPNYMQTLMQ 60          
BLAST of EMLSAG00000011076 vs. Select Arthropod Genomes
Match: gb|EEC14363.1| (conserved hypothetical protein [Ixodes scapularis])

HSP 1 Score: 45.4394 bits (106), Expect = 9.963e-8
Identity = 18/54 (33.33%), Postives = 38/54 (70.37%), Query Frame = 0
Query:    2 EKLRALHREYELNTAVYLLEPWEKRIVNSVFLALGSLALYSAFTYLPHYASSLI 55
            +KL+  +  Y+L+T++Y+LE WEKR+ N   +A+ +++ Y+ + +LP Y  +++
Sbjct:    9 KKLKWYYFMYDLHTSLYMLESWEKRVFNIGLVAVFAMSSYTTYVFLPRYTRNVL 62          
BLAST of EMLSAG00000011076 vs. Select Arthropod Genomes
Match: AHN56332.1 (uncharacterized protein Dmel_CG34194, isoform B [Drosophila melanogaster])

HSP 1 Score: 45.0542 bits (105), Expect = 3.885e-7
Identity = 20/55 (36.36%), Postives = 34/55 (61.82%), Query Frame = 0
Query:    4 LRALHREYELNTAVYLLEPWEKRIVNSVFLALGSLALYSAFTYLPHYASSLIHCL 58
            ++ L+  YELNT + + EPWEK  +N +  +  SL LY++F ++P Y  ++   L
Sbjct:   20 VKWLYTLYELNTQIAICEPWEKVFLNVLLGSFVSLILYASFAFVPGYCVTVFQLL 74          
BLAST of EMLSAG00000011076 vs. Select Arthropod Genomes
Match: ABV53836.1 (uncharacterized protein Dmel_CG34194, isoform A [Drosophila melanogaster])

HSP 1 Score: 45.0542 bits (105), Expect = 3.885e-7
Identity = 20/55 (36.36%), Postives = 34/55 (61.82%), Query Frame = 0
Query:    4 LRALHREYELNTAVYLLEPWEKRIVNSVFLALGSLALYSAFTYLPHYASSLIHCL 58
            ++ L+  YELNT + + EPWEK  +N +  +  SL LY++F ++P Y  ++   L
Sbjct:   20 VKWLYTLYELNTQIAICEPWEKVFLNVLLGSFVSLILYASFAFVPGYCVTVFQLL 74          
BLAST of EMLSAG00000011076 vs. nr
Match: gi|1037071573|ref|XP_017036814.1| (PREDICTED: serine palmitoyltransferase small subunit B [Drosophila kikkawai])

HSP 1 Score: 60.8474 bits (146), Expect = 6.293e-11
Identity = 23/56 (41.07%), Postives = 41/56 (73.21%), Query Frame = 0
Query:    1 MEKLRALHREYELNTAVYLLEPWEKRIVNSVFLALGSLALYSAFTYLPHYASSLIH 56
            M   + ++R+YEL T + +LEPWE++++N  FL + +L ++S+F YLP+Y  +L+H
Sbjct:    1 MVDFKHVYRQYELITCINMLEPWERKLINGFFLVMLTLVIFSSFMYLPNYLETLVH 56          
BLAST of EMLSAG00000011076 vs. nr
Match: gi|195503842|ref|XP_002098823.1| (uncharacterized protein Dyak_GE10582, isoform A [Drosophila yakuba] >gi|194184924|gb|EDW98535.1| uncharacterized protein Dyak_GE10582, isoform A [Drosophila yakuba])

HSP 1 Score: 57.3806 bits (137), Expect = 1.578e-9
Identity = 24/49 (48.98%), Postives = 35/49 (71.43%), Query Frame = 0
Query:    8 HREYELNTAVYLLEPWEKRIVNSVFLALGSLALYSAFTYLPHYASSLIH 56
            +R+YEL T V +LEPWEK+++N  FL +  L L+S+F YLP Y  +L+ 
Sbjct:   12 YRQYELVTCVNMLEPWEKKLINGFFLVMLFLVLFSSFMYLPDYMQTLMQ 60          
BLAST of EMLSAG00000011076 vs. nr
Match: gi|195349888|ref|XP_002041474.1| (GM10128 [Drosophila sechellia] >gi|194123169|gb|EDW45212.1| GM10128 [Drosophila sechellia] >gi|194201061|gb|EDX14637.1| GD18090 [Drosophila simulans])

HSP 1 Score: 56.9954 bits (136), Expect = 1.942e-9
Identity = 24/49 (48.98%), Postives = 36/49 (73.47%), Query Frame = 0
Query:    8 HREYELNTAVYLLEPWEKRIVNSVFLALGSLALYSAFTYLPHYASSLIH 56
            +R+YEL T V +LEPWEK+++N  FL +  L L+S+F YLP+Y  +L+ 
Sbjct:   12 YRQYELVTCVNMLEPWEKKLINGFFLVMLFLVLFSSFMYLPNYMQTLMQ 60          
BLAST of EMLSAG00000011076 vs. nr
Match: gi|1036881413|ref|XP_016979425.1| (PREDICTED: serine palmitoyltransferase small subunit B [Drosophila rhopaloa])

HSP 1 Score: 56.9954 bits (136), Expect = 1.967e-9
Identity = 23/49 (46.94%), Postives = 36/49 (73.47%), Query Frame = 0
Query:    8 HREYELNTAVYLLEPWEKRIVNSVFLALGSLALYSAFTYLPHYASSLIH 56
            +R+YEL T + +LEPWEK+++N  FL + SL ++S+F YLP Y  +L+ 
Sbjct:   12 YRQYELVTCINMLEPWEKKLINGFFLIMLSLVIFSSFMYLPDYLQTLLQ 60          
BLAST of EMLSAG00000011076 vs. nr
Match: gi|194907569|ref|XP_001981579.1| (uncharacterized protein Dere_GG12135 [Drosophila erecta] >gi|190656217|gb|EDV53449.1| uncharacterized protein Dere_GG12135 [Drosophila erecta])

HSP 1 Score: 56.9954 bits (136), Expect = 2.263e-9
Identity = 23/49 (46.94%), Postives = 36/49 (73.47%), Query Frame = 0
Query:    8 HREYELNTAVYLLEPWEKRIVNSVFLALGSLALYSAFTYLPHYASSLIH 56
            +R+YEL T + +LEPWEK+++N  FL +  L L+S+F YLP+Y  +L+ 
Sbjct:   12 YRQYELVTCINMLEPWEKKLINGFFLVMLFLVLFSSFMYLPNYMQTLMQ 60          
BLAST of EMLSAG00000011076 vs. nr
Match: gi|1013931699|ref|XP_002105134.2| (uncharacterized protein Dsimw501_GD18090 [Drosophila simulans] >gi|900916735|gb|KMZ06237.1| uncharacterized protein Dsimw501_GD18090 [Drosophila simulans])

HSP 1 Score: 57.7658 bits (138), Expect = 2.268e-9
Identity = 24/49 (48.98%), Postives = 36/49 (73.47%), Query Frame = 0
Query:    8 HREYELNTAVYLLEPWEKRIVNSVFLALGSLALYSAFTYLPHYASSLIH 56
            +R+YEL T V +LEPWEK+++N  FL +  L L+S+F YLP+Y  +L+ 
Sbjct:   35 YRQYELVTCVNMLEPWEKKLINGFFLVMLFLVLFSSFMYLPNYMQTLMQ 83          
BLAST of EMLSAG00000011076 vs. nr
Match: gi|1058269042|gb|JAT37235.1| (hypothetical protein g.33286, partial [Graphocephala atropunctata])

HSP 1 Score: 57.3806 bits (137), Expect = 2.403e-9
Identity = 25/55 (45.45%), Postives = 38/55 (69.09%), Query Frame = 0
Query:    1 MEKLRALHREYELNTAVYLLEPWEKRIVNSVFLALGSLALYSAFTYLPHYASSLI 55
            M+ L   + +YEL T +Y+ EPWEK+++N + + L SL  YS++ YLPHY  SL+
Sbjct:   26 MKWLSYWYLQYELITCIYMFEPWEKKLLNGIIVMLLSLVAYSSYMYLPHYTVSLL 80          
BLAST of EMLSAG00000011076 vs. nr
Match: gi|964099147|ref|XP_014760936.1| (uncharacterized protein Dana_GF27714 [Drosophila ananassae] >gi|939214652|gb|KPU72842.1| uncharacterized protein Dana_GF27714 [Drosophila ananassae])

HSP 1 Score: 56.9954 bits (136), Expect = 2.416e-9
Identity = 21/49 (42.86%), Postives = 37/49 (75.51%), Query Frame = 0
Query:    8 HREYELNTAVYLLEPWEKRIVNSVFLALGSLALYSAFTYLPHYASSLIH 56
            +R+YEL T + +LEPWE++++N  FL + +L ++S+F YLP+Y  +L+ 
Sbjct:   12 YRQYELVTCINMLEPWERKLINGFFLIMMTLVIFSSFVYLPNYLQTLMQ 60          
BLAST of EMLSAG00000011076 vs. nr
Match: gi|118783501|ref|XP_001230866.1| (AGAP004153-PA [Anopheles gambiae str. PEST] >gi|116128899|gb|EAU76955.1| AGAP004153-PA [Anopheles gambiae str. PEST])

HSP 1 Score: 56.6102 bits (135), Expect = 2.921e-9
Identity = 22/49 (44.90%), Postives = 35/49 (71.43%), Query Frame = 0
Query:   11 YELNTAVYLLEPWEKRIVNSVFLALGSLALYSAFTYLPHYASSLIHCLI 59
            YELNT +Y+L+PWEKR VN+   A+  L ++S++T+LP Y   L++  +
Sbjct:   16 YELNTCIYMLDPWEKRFVNAFIFAILGLLIFSSYTFLPGYTRKLVNAFL 64          
BLAST of EMLSAG00000011076 vs. nr
Match: gi|1037078158|ref|XP_017082838.1| (PREDICTED: serine palmitoyltransferase small subunit B [Drosophila eugracilis])

HSP 1 Score: 56.6102 bits (135), Expect = 2.941e-9
Identity = 23/49 (46.94%), Postives = 36/49 (73.47%), Query Frame = 0
Query:    8 HREYELNTAVYLLEPWEKRIVNSVFLALGSLALYSAFTYLPHYASSLIH 56
            +R+YEL T + +LEPWEK+++N  FL + SL ++S+F YLP Y  +L+ 
Sbjct:   12 YRQYELVTCINMLEPWEKKLINGFFLIMLSLVIFSSFMYLPDYLETLMQ 60          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000011076 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 25
Match NameE-valueIdentityDescription
-7.608e-932.73symbol:sptssa "Serine palmitoyltransferase small s... [more]
-8.611e-932.73symbol:sptssa "serine palmitoyltransferase, small ... [more]
-8.882e-932.73symbol:SPTSSA "Uncharacterized protein" species:90... [more]
-2.674e-830.91symbol:SPTSSA "Serine palmitoyltransferase small s... [more]
-2.758e-830.91symbol:SPTSSA "Serine palmitoyltransferase small s... [more]
-3.025e-830.91symbol:SPTSSA "Uncharacterized protein" species:98... [more]
-3.637e-830.91symbol:Sptssa "Serine palmitoyltransferase small s... [more]
-3.637e-830.91symbol:Sptssa "serine palmitoyltransferase, small ... [more]
-3.637e-830.91symbol:Sptssa "serine palmitoyltransferase, small ... [more]
-6.376e-838.00symbol:sptssa "Serine palmitoyltransferase small s... [more]

Pages

back to top
BLAST of EMLSAG00000011076 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592779309|gb|GAXK01175259.1|4.069e+029.41TSA: Calanus finmarchicus comp2291_c0_seq1 transcr... [more]
gi|592798825|gb|GAXK01155743.1|8.162e+048.00TSA: Calanus finmarchicus comp104037_c5_seq3 trans... [more]
back to top
BLAST of EMLSAG00000011076 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000110764.338e-37100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s749:77862... [more]
back to top
BLAST of EMLSAG00000011076 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
gi|251765089|sp|B9EN89.1|SPTSA_SALSA1.258e-932.73RecName: Full=Serine palmitoyltransferase small su... [more]
gi|82178557|sp|Q5BJC1.1|SPTSA_DANRE1.435e-932.73RecName: Full=Serine palmitoyltransferase small su... [more]
gi|238054261|sp|Q969W0.2|SPTSA_HUMAN4.903e-930.91RecName: Full=Serine palmitoyltransferase small su... [more]
gi|68565109|sp|Q5E978.1|SPTSA_BOVIN4.940e-930.91RecName: Full=Serine palmitoyltransferase small su... [more]
gi|238054262|sp|Q8R207.2|SPTSA_MOUSE6.806e-930.91RecName: Full=Serine palmitoyltransferase small su... [more]
gi|82182959|sp|Q6DFT6.1|SPTSA_XENTR1.350e-838.00RecName: Full=Serine palmitoyltransferase small su... [more]
gi|82181328|sp|Q66J44.1|SPSAA_XENLA1.978e-836.00RecName: Full=Serine palmitoyltransferase small su... [more]
gi|82184530|sp|Q6GPZ5.1|SPSAB_XENLA2.355e-836.00RecName: Full=Serine palmitoyltransferase small su... [more]
gi|123889696|sp|Q1RLT2.1|SPTSB_DANRE9.365e-734.04RecName: Full=Serine palmitoyltransferase small su... [more]
back to top
BLAST of EMLSAG00000011076 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 6
Match NameE-valueIdentityDescription
EAU76955.15.970e-1244.90AGAP004153-PA [Anopheles gambiae str. PEST][more]
AHN57556.14.224e-848.98uncharacterized protein Dmel_CG34293, isoform B [D... [more]
ABW08783.14.224e-848.98uncharacterized protein Dmel_CG34293, isoform A [D... [more]
gb|EEC14363.1|9.963e-833.33conserved hypothetical protein [Ixodes scapularis][more]
AHN56332.13.885e-736.36uncharacterized protein Dmel_CG34194, isoform B [D... [more]
ABV53836.13.885e-736.36uncharacterized protein Dmel_CG34194, isoform A [D... [more]
back to top
BLAST of EMLSAG00000011076 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 25
Match NameE-valueIdentityDescription
gi|1037071573|ref|XP_017036814.1|6.293e-1141.07PREDICTED: serine palmitoyltransferase small subun... [more]
gi|195503842|ref|XP_002098823.1|1.578e-948.98uncharacterized protein Dyak_GE10582, isoform A [D... [more]
gi|195349888|ref|XP_002041474.1|1.942e-948.98GM10128 [Drosophila sechellia] >gi|194123169|gb|ED... [more]
gi|1036881413|ref|XP_016979425.1|1.967e-946.94PREDICTED: serine palmitoyltransferase small subun... [more]
gi|194907569|ref|XP_001981579.1|2.263e-946.94uncharacterized protein Dere_GG12135 [Drosophila e... [more]
gi|1013931699|ref|XP_002105134.2|2.268e-948.98uncharacterized protein Dsimw501_GD18090 [Drosophi... [more]
gi|1058269042|gb|JAT37235.1|2.403e-945.45hypothetical protein g.33286, partial [Graphocepha... [more]
gi|964099147|ref|XP_014760936.1|2.416e-942.86uncharacterized protein Dana_GF27714 [Drosophila a... [more]
gi|118783501|ref|XP_001230866.1|2.921e-944.90AGAP004153-PA [Anopheles gambiae str. PEST] >gi|11... [more]
gi|1037078158|ref|XP_017082838.1|2.941e-946.94PREDICTED: serine palmitoyltransferase small subun... [more]

Pages

back to top
BLAST of EMLSAG00000011076 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s749supercontigLSalAtl2s749:77862..78041 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s749-processed-gene-0.2
Biotypeprotein_coding
EvidenceIEA
NoteSerine palmitoyltransferase small subunit A
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000011076 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000011076EMLSAT00000011076-706923Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s749:77862..78041+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000011076-693842 ID=EMLSAG00000011076-693842|Name=EMLSAG00000011076|organism=Lepeophtheirus salmonis|type=gene|length=180bp|location=Sequence derived from alignment at LSalAtl2s749:77862..78041+ (Lepeophtheirus salmonis)
ATGGAGAAACTTCGAGCCTTACACAGAGAATACGAACTCAACACAGCCGT TTATTTATTGGAGCCTTGGGAAAAGCGGATCGTCAACTCCGTGTTCCTTG CCCTGGGATCTCTTGCACTCTACTCCGCATTCACTTATCTCCCACACTAC GCCTCTTCCCTCATTCACTGTCTCATCTAA
back to top
Add to Basket