EMLSAG00000000030, EMLSAG00000000030-682796 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000030
Unique NameEMLSAG00000000030-682796
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000030 vs. C. finmarchicus
Match: gi|592832582|gb|GAXK01124962.1| (TSA: Calanus finmarchicus comp25184_c2_seq1 transcribed RNA sequence)

HSP 1 Score: 41.2022 bits (95), Expect = 6.899e-4
Identity = 32/115 (27.83%), Postives = 50/115 (43.48%), Query Frame = 0 
Query:   72 FEFDNEVETPLGVLKGWIGDLTYPVVVGAFAVLTLYIIAQLAFQFMGFAFASKSALFTSFSEWFASTAVFQKLFTTYIENETPLDGRSARNLNS---PYADRIVSMITRTLESIE 183
            F+F+N   T LG L  W GD   PV++   AV T+Y   ++    +G  F  K+A   S         VFQ LF   ++    +       L++   P A     +  RT+ ++E
Sbjct:   11 FDFENAGTTKLGQLLAWKGDALQPVMLFGMAVFTVYTALRIILTLIGGIFNIKAAAIGSI------IGVFQDLFAGLMKQILMIKNPIIEKLSALVQPDAADTTPVADRTMRALE 337
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BLAST of EMLSAG00000000030 vs. C. finmarchicus
Match: gi|592935984|gb|GAXK01022569.1| (TSA: Calanus finmarchicus comp7731594_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 33.8834 bits (76), Expect = 1.192e-1
Identity = 17/38 (44.74%), Postives = 27/38 (71.05%), Query Frame = 0 
Query:   47 IVNWNNGATSDVSASEPITAEGNGLFEFDNEVETPLGV 84
            +V  ++G T++V+A   +TAEGNG+   DN V+ PLG+
Sbjct:    3 LVLLSHGVTANVTA---VTAEGNGILAGDNVVKKPLGL 107
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BLAST of EMLSAG00000000030 vs. C. finmarchicus
Match: gi|592843809|gb|GAXK01113735.1| (TSA: Calanus finmarchicus comp5022983_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 7.346e+0
Identity = 14/34 (41.18%), Postives = 17/34 (50.00%), Query Frame = 0 
Query:  127 LFTSFSEWFASTAVFQKLFTTYIENETPLDGRSA 160
            LF  F   FA    F KLF TYI+++ P   R  
Sbjct:   73 LFLFFYPLFAKVKTFPKLFRTYIQSQRPWIPRPV 174
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BLAST of EMLSAG00000000030 vs. L. salmonis peptides
Match: EMLSAP00000000030 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1006:131162:131806:-1 gene:EMLSAG00000000030 transcript:EMLSAT00000000030 description:"maker-LSalAtl2s1006-augustus-gene-1.21")

HSP 1 Score: 389.808 bits (1000), Expect = 3.644e-139
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0 
Query:    1 MIALVLFYIFMSSVSAQEVLHTTSPAPEYQFNKDFAFNLHSNLGDKIVNWNNGATSDVSASEPITAEGNGLFEFDNEVETPLGVLKGWIGDLTYPVVVGAFAVLTLYIIAQLAFQFMGFAFASKSALFTSFSEWFASTAVFQKLFTTYIENETPLDGRSARNLNSPYADRIVSMITRTLESIEAAKEKYEA 191
            MIALVLFYIFMSSVSAQEVLHTTSPAPEYQFNKDFAFNLHSNLGDKIVNWNNGATSDVSASEPITAEGNGLFEFDNEVETPLGVLKGWIGDLTYPVVVGAFAVLTLYIIAQLAFQFMGFAFASKSALFTSFSEWFASTAVFQKLFTTYIENETPLDGRSARNLNSPYADRIVSMITRTLESIEAAKEKYEA
Sbjct:    1 MIALVLFYIFMSSVSAQEVLHTTSPAPEYQFNKDFAFNLHSNLGDKIVNWNNGATSDVSASEPITAEGNGLFEFDNEVETPLGVLKGWIGDLTYPVVVGAFAVLTLYIIAQLAFQFMGFAFASKSALFTSFSEWFASTAVFQKLFTTYIENETPLDGRSARNLNSPYADRIVSMITRTLESIEAAKEKYEA 191
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000030 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000030 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 3
Match NameE-valueIdentityDescription
gi|592832582|gb|GAXK01124962.1|6.899e-427.83TSA: Calanus finmarchicus comp25184_c2_seq1 transc... [more]
gi|592935984|gb|GAXK01022569.1|1.192e-144.74TSA: Calanus finmarchicus comp7731594_c0_seq1 tran... [more]
gi|592843809|gb|GAXK01113735.1|7.346e+041.18TSA: Calanus finmarchicus comp5022983_c0_seq1 tran... [more]
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BLAST of EMLSAG00000000030 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000000303.644e-139100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1006:1311... [more]
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BLAST of EMLSAG00000000030 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000030 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000030 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000030 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1006supercontigLSalAtl2s1006:131162..131806 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1006-augustus-gene-1.21
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000030 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000030EMLSAT00000000030-695877Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1006:131162..131806-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000030-682796 ID=EMLSAG00000000030-682796|Name=EMLSAG00000000030|organism=Lepeophtheirus salmonis|type=gene|length=645bp|location=Sequence derived from alignment at LSalAtl2s1006:131162..131806- (Lepeophtheirus salmonis)
ATGATTGCTTTGGTATTGTTCTACATCTTTATGTCCTCTGTCTCTGCTCA
AGAAGTATTGCACACCACCTCACCTGCTCCCGAATATCAATTCAACAAGG
TAACAGTAGTTTAACATATATATATATATATATATTAAACGTGAGACTAA
TATCCCCTCTTTCCCAAGGACTTTGCCTTCAACCTCCATTCCAATCTTGG
GGACAAAATTGTCAATTGGAACAATGGTGCCACCTCTGATGTCTCAGCTT
CTGAGCCCATCACAGCTGAAGGAAATGGCCTCTTTGAATTTGACAATGAA
GTAGAAACACCATTGGGAGTTCTCAAGGGTTGGATCGGGGATTTGACTTA
TCCCGTAGTTGTTGGTGCCTTTGCCGTCCTAACCCTCTATATCATTGCTC
AACTTGCCTTCCAATTTATGGGATTTGCCTTTGCTTCCAAGTCAGCACTG
TTCACGTCTTTTAGCGAATGGTTTGCTTCAACTGCCGTTTTCCAAAAGTT
GTTCACTACCTATATCGAGAATGAGACGCCTTTAGATGGTAGATCTGCCC
GCAATTTAAACTCTCCTTATGCTGATCGTATTGTTAGCATGATCACCCGA
ACCTTGGAGAGCATTGAGGCTGCCAAGGAAAAGTATGAAGCATAA
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