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Associated RNAi Experiments
Homology
BLAST of EMLSAG00000000045 vs. L. salmonis peptides
Match: EMLSAP00000000045 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1009:108613:114600:1 gene:EMLSAG00000000045 transcript:EMLSAT00000000045 description:"snap_masked-LSalAtl2s1009-processed-gene-0.17") HSP 1 Score: 612.068 bits (1577), Expect = 0.000e+0 Identity = 310/310 (100.00%), Postives = 310/310 (100.00%), Query Frame = 0
Query: 1 MEDKDGDKPEEKIEGNDDEEEEPLLVKESGEQNNNTCNDSPSHNTPLEENAEPSEPLLSSSCSSPESSSVLQEQQILNSTSSSPTQNNFIAPPSHPEDEDHEEGDRDHKVIEEEVDQQESEIIKESDPDHDNEELLPSSKEQQYNGERSSNDSNSRISSPKESILLEQQEQEEVDGTLSECLLEDSSKMVQVEQTASPQQQQALEKQISLEEPPIIHDPTPPPPIGANDPQIYSPMHSHHPQQDPYNSFSRPSPEEEICGGGAGSGANRHYSNNNFNNNTLNNDSQRNGGEADIFIDEEHEDAGREEIDG 310
MEDKDGDKPEEKIEGNDDEEEEPLLVKESGEQNNNTCNDSPSHNTPLEENAEPSEPLLSSSCSSPESSSVLQEQQILNSTSSSPTQNNFIAPPSHPEDEDHEEGDRDHKVIEEEVDQQESEIIKESDPDHDNEELLPSSKEQQYNGERSSNDSNSRISSPKESILLEQQEQEEVDGTLSECLLEDSSKMVQVEQTASPQQQQALEKQISLEEPPIIHDPTPPPPIGANDPQIYSPMHSHHPQQDPYNSFSRPSPEEEICGGGAGSGANRHYSNNNFNNNTLNNDSQRNGGEADIFIDEEHEDAGREEIDG
Sbjct: 1 MEDKDGDKPEEKIEGNDDEEEEPLLVKESGEQNNNTCNDSPSHNTPLEENAEPSEPLLSSSCSSPESSSVLQEQQILNSTSSSPTQNNFIAPPSHPEDEDHEEGDRDHKVIEEEVDQQESEIIKESDPDHDNEELLPSSKEQQYNGERSSNDSNSRISSPKESILLEQQEQEEVDGTLSECLLEDSSKMVQVEQTASPQQQQALEKQISLEEPPIIHDPTPPPPIGANDPQIYSPMHSHHPQQDPYNSFSRPSPEEEICGGGAGSGANRHYSNNNFNNNTLNNDSQRNGGEADIFIDEEHEDAGREEIDG 310
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000045 vs. GO
Analysis Date: 2014-04-02 ( Blast vs. GO)
Total hits: 0
| Match Name | E-value | Identity | Description | |
|---|
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BLAST of EMLSAG00000000045 vs. L. salmonis peptides
Analysis Date: 2014-05-10 ( Blastp vs. self)
Total hits: 1
| Match Name | E-value | Identity | Description | |
|---|
| EMLSAP00000000045 | 0.000e+0 | 100.00 | pep:novel supercontig:LSalAtl2s:LSalAtl2s1009:1086... | [more] |
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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| LSalAtl2s1009 | supercontig | LSalAtl2s1009:108613..114600 + |
Analyses
This gene is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Logic name | ensemblgenomes |
| Description | snap_masked-LSalAtl2s1009-processed-gene-0.17 |
| Biotype | protein_coding |
| Evidence | IEA |
| Note | Hypothetical protein |
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s1009:108613..114600+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below. >EMLSAG00000000045-682811 ID=EMLSAG00000000045-682811|Name=EMLSAG00000000045|organism=Lepeophtheirus salmonis|type=gene|length=5988bp|location=Sequence derived from alignment at LSalAtl2s1009:108613..114600+ (Lepeophtheirus salmonis)
TTACTTCTTAGTTTCTAAATATATGTGTGATGTGATAGTCTGTACAAAGA
AAAAAATTGACAAAAACCAACTTTTTTTTTGAAGAAACGAAACGCCAAAA
TATACACACCCGTCTGATGTAATCAAATTCATTGAACGCTTCCAAAAAAA
ACCTTCCTAATTACTCCAACATTGGTTATAATTCCTCGTCAAATGTGATA
TTATTGCACTATTCCTCACCACCTATAATGAAATAAACATTAAGAGTGCT
GCGATGGGAAGGCGAAAAATTATTATTTATAATAATAGTTTAATTTGTCG
TCTCTCCTTCTGTTGTTGGTAAATTAGTATTCACTATTTGGAGACAACAA
CTATCTCTACTCCAACATCAGGAATAATAACAATAATAATAATAAACAGC
ATACGTGCTTTTGCAAAAGAATATAATTGTTGTTATTAGTTTTAAAAAAA
ATTAAAAAAATTTAGCGGTGTAAAGTGGAGAGAGATTAGAAAGCATAAAT
TGTGGACCCAACAACACTGCTAAAAAAAAGGAAGACGAAGAATAAAAATA
AAAACGGAACCGAGGTCATGCTGTTATAAGTAATATACTATAATGATTAA
AATCAGCTGAGAAGGAAGAGAAAGAGTGGGAAAGAAGAATAAGTAAAAGA
CGGAGGCTGGTGGAAGCGGAAGATTTTCATTGATCGACAACCATTCCTCT
TTACATTTGCTGCCTTTTCTTCTGGTAATACATATAACAAACGTAATAGT
CCTCATTTGAAGGAGAGAAAGGAGAAGGGATTTTGTGAGTGTGTATGTGT
CTGTTGTGGAGAAATCCTCTTTTTCCTGATTCGTTTTGGCCATTAACTGC
CTTAAAAAAATTCTCTTCCTTAAATCGCATTTTAAAAAATATATATATAT
ATACAGCATGAAAAACAGTTTTTCATGCAATTAAAATCATAAAAAAAGCC
GTCATTCATTATTTTTGCAATATAGATTTGACGAAATTGGCATAGAAGAA
CAACGCAAAAATCAGTGAAACCGTGCCTTTTAAAAATTGTTCCTCGTAAT
TAAAGGAAACATATATTAAAAAAACATGTGAAATTCTGGATCATAAAAGG
AAGAAGAAAAAAAATAATACTCATAAAAAATAGAAAGGTAAGTTGTAAAA
AAAAAAAAAAAAAAAAATAACTCAAAWACAWAATAGTAAAWAAWAARCAW
AATGCCCCCCCCCCCCCTCCCCCATATTTTATGATAAATTGTTCTTCCGG
GAGTTAACGGCCGCAATGAAAATGAAAAACTTGTAGGAAGGCCTCTACTT
CTGTGGTTATGTACATAGAAGGATTTCGTATACGCTTGATCAAATAAGTA
TGTCCCAATAATGGCTTTGAATGGTTCTTCTCCATACTTTATTTAATTTA
TAATTAATATGTACAGCTACTACTTAAATAATTATCTTAATACTAATATT
TCTCTTTTTCTATTTTTTTTTTTTCCTCTCTTTTCCTTAACAACCTTCTT
TTTTCCGGCCTCTTCTTAGAAAAAAAAAAAAATATATACATATATAATAA
AAAGTAGTAATGACAGTTTCCTACATTCTGAAGTATTTCAAGTACATTTA
CATATAAATAAATCTTTAACTGTATTTTTCTACAAAATAACCCAACCATC
AACTCATTACTAATAGCGACAGCCATCATGGAGGATAAGGACGGGTAAGA
CCTTTATTTTTGTTGATGTTTTGGTCCTCTGTACAATATATACTCGACTT
TTAAAACTTTTCTTATATGTTATATTTATGTGTGTACAAGTTGCAACTCA
AAAATAATGGTAATAATTGAAAGATGGTGCAGTTTTTGAGTCTTTTAGTA
TAAAATGACATATACCGGGTGGTCCATTGAAATCTGAAATCTTACTAATT
CAAAAATCAATGAAGATTCTGTGATTGAGAGGAATTAATATTCCAATATA
TTAAAGCATAAACAATTAGTTACAAAATTTAAAAAATATGACCTCTTTAT
CTTACGTACGAGTTGAGAAAATTACACTTGAACGTGATGGACGAATTTCC
ATTCTTGCACTCCCAGTAGTTGGGCGTCTCCAAGACCACTTTTACGACGT
CAGCAAGTCCAAAACGTTGGAGAGGAAGAAGGTCTCTATTAAAAAGGCCA
AATTGGACAACGAGGAGTTAAAGATAATAGCCATTAATGATGAAGAGAGC
TCAGACATTTATCTATTTGTAGTAATAATTTTTGTTGAAATTCTTATGTT
AATAAATTATATCGTGTTGAATTTTCAATATTTAAAGTGTTCAGATTTTA
ATAGATCACTTGGTAGAGCTTTTTGTGATGACGTTGGCATTGCTCATGTC
GGTCATTTTGGGGATCTTAACAACCGTGTTTATATCAATGACAACTCTTT
TTTTTTTTCATTAAAAGGAAGGGAAACTGGGAACTTATTAGATGTCAAAA
TGAGACTTCTATATAAAAGAAATCCTCTATCAAAAATCTGTCCCTCTATT
ACCTTCTTTGATTATATATCTGACCCAAAAATGTGTTAAAATATATATTT
TATTAAACTTATTACAATCTTATTTCATATACATTTAAAAATTTCAACTT
TGATCCCCCGAAATGAATGAAATGTATGAAGTCAGGGAAACACTCTAATT
AATTTTAATCCATCAAAATGAAATATGTACTCAATTCCCATTAACTCTCA
TAATAGTGTCCCCTAATAACATCCAAGGATAAAAGAAACTTAATTGTGGT
GTAAGTGTTGTTAGCAATAAAAATAATTTGAAAAAAAAATTAAAAAATCA
ATAATTATTCATAGAAAGTTCAATTTTTTGGAAAAAAAATTGAATAATTA
TATTTCAATATTAAGTTCTTGCTCTGCTGCATAATTTCCCTGAATGACCT
TTTTATTAAGAAAATAAATCTTTCAAAAAAATATTTTTACACCTCTTTTC
GCGATTTTTTTTTTCATCTTAACGAAAAAATGATCAAATACACCAAAAAA
TCTATCATTCGTGGGAAGGAGTTCCAACCACTCGTGTCCACCTCTGATAC
TTGAAGCATTATCTTTTAGCTGAGTTAATTATGATCTGTAAAGTGCCGTT
GAGTGTTTATCCTACTAATGAAAATATGGAATGTTGCAATTAAAAAATGC
AAACTTTAATTTGTGAGATATTATTATTATAGTTACGACTTGTACAGACA
AAAAAAGTTTCTTTATTCTTTTTAAAGAAATGGGGATTTCACTTTAAATT
ATTTAATAATTTAAATTAATTTTTTTTTGCACAAAAGCAACCGAATTGTT
ACTGTTGATTGTCATATCTTTTTACCCTATACAATATAATAAAAAGACCA
TGGTATGGAGCAAAAAATCACTCAAATGAATAAAATCATTTTCATTTTAA
TTATTACGAGTAATTGTAATGAAAAATGTATTTAATTCTAATTATACTAA
AGCTATATCGACAAAGGGTCATTCATATATTTGACCCTTGTTTGTAATAC
ACATATATTTTAGGTCCAATCTGCTATGATGTTTATAGAGTTATAAACAT
GAGTTGATTTTTTTTCTCTACAGGTTTTTTTATGCAGTAGTTCCACTAAC
ATACATTATTATTAAAAGTTTAATATAATTATTAGTGCTGGGGCTCGGTC
TGTAAATCCTGGACCGCCTGAGACCTTTATGAGTTCGGTCCAACAAAAGC
TCGGTCTGGACCGGTCTCATATAAAAATTTTGTCTAGATAGGTTCAAAGG
AAAAATTTGGTCGAGTTCGGTCTCAAAAGAAATCCGTCTAGACCGATTTT
ACAGAGAACTATTTTATAACATGACATCATATGTTATCTCAAGTACAATG
ACGTTATAAGAAGTTTAAACAGAGATAGCTCGGATTAATTTTGATCCTGC
CGTCTCTTATATGTATGCAGTATTTGTTCTAGAACCTATCGTGTACTTTT
GAGGGTTTTATTTTTGAAAAAAATGAATGCCAGTTGATCTAGTAAAACAT
ATAAGACCGGCAAAAATCGGTCCATAAAGTGAGACCGAGTCTAAATCGGT
CTACAAAGTGCGACAGAAAAATCGAGTCAAATCGGTCTAGAAAACATCAC
TTAAGACCAAACCGAACAAAAAATTCGTTGCTGGACCGAGTATCAACACT
GATAATTAGTGTTGGACTCGAGTGAAATTTGAACTCGAAAAAATGTGTAG
CTTACCAAATTCCACAATTTTCTGGAAATAAATATAAAACGTTCTGCAAA
ATTTGTCTTTAATCAACCCGGAATCAGGAACATTACTCGATATATTTGAA
TGACGATGAGTCAAATTTTTAGCTTATTCAAGAGGACAGTAAAAAAACTG
TATTCAGACGTTCTTTTCTTATTTTAAGAGGAGACATTTCTAGTCTCGTT
AGGTATAACTGGAGTACTGAAGGGTATAAAACGGAAATAGGTTCAACTGA
TATTGGAAGCAGTACTTGCAGTTTCCCTACGCCATAAAAAAATGACGCCT
AATGACGTTACCCTTTACATTTCCGACCCTAAGAAAATGAAAAAAAAACA
AGAATACAAATGATTTTATTTATGAAAAGTCCTACAAATTTATGAGAAAG
ACCCTACATCAAATAAAAATCCAGCGACACCTTATAAGTCCTCTGAACAA
CATTTTTGTTTGATATTTTTATTAAAAATGTACCGATACTTATTTTAGTA
GCGTAACCAGTACGAAAATTATACAAAAACTTGAATTCAAAAATGTTGAC
TCGAATCTAACACTAAATAGAATAAATGAATACTTATGAAAATATAATTA
GTTGTACTAAAGTAAATTCTTTTCTTTTTACCCATGTTTTCTTTTAGAGA
CAAGCCAGAGGAGAAAATTGAGGGAAATGACGATGAGGAAGAAGAACCTT
TATTGGTAAAGGAAAGTGGTGAACAAAATAATAATACTTGTAACGACAGC
CCTTCTCATAATACTCCTTTGGAGGAAAACGCAGAGCCATCAGAACCACT
GTTGTCCTCTTCTTGTTCTTCTCCTGAGTCTAGTTCAGTACTTCAGGAGC
AGCAGATCCTGAATAGCACATCCTCCTCTCCAACTCAAAATAACTTTATC
GCCCCACCTTCTCATCCCGAAGACGAGGACCACGAGGAAGGAGACAGAGA
CCACAAAGTAATCGAAGAAGAAGTGGATCAACAAGAGAGTGAAATAATCA
AAGAGTCCGATCCGGATCATGATAATGAGGAACTCCTTCCCTCTTCAAAA
GAACAACAATATAATGGAGAACGGAGTAGCAATGATAGTAATAGTCGAAT
CAGCTCTCCCAAAGAATCCATATTATTAGAACAACAGGAGCAAGAAGAAG
TAGACGGGACTCTTAGTGAGTGCTTATTAGAGGATTCTTCTAAAATGGTT
CAAGTGGAACAAACAGCCTCTCCGCAGCAGCAGCAGGCTCTTGAAAAACA
AATATCCCTTGAAGAACCTCCAATCATTCATGATCCTACKCCGCCGCCAC
CTATAGGAGCAAATGATCCTCAAATCTACTCCCCCATGCATTCTCATCAC
CCTCAACAGGATCCGTACAACTCCTTCTCTCGACCTTCTCCTGAAGAGGA
AATCTGTGGTGGTGGAGCTGGAAGTGGTGCTAATAGACATTACAGCAACA
ATAACTTTAATAATAACACTCTTAATAATGGTGGAGGAGGCTACTCARCC
TCKCCCAATGCMGGAGGAGGKCCCTATCCKCCACCACCACCKCCACCACT
CTCATCCATTCATCCGCATCAAAGGCCTTTTCAACATCCTTCATTTCASC
ATCCGTATCATCCTCACATCCCTCATCATATTTCACAGCAGCTCCACACT
CAGACCCTCCCGCCACCGCCCCATCCCTTGCTCCTCAACAATAATAATAA
CAAAGACTCACAGCGCAACGGGGGTGAAGCGGATATCTTCATTGATGAAG
AGCATGAGGACGCGGGAAGAGAGGAAATCGATGGGTAA back to top
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