EMLSAG00000000062, EMLSAG00000000062-682828 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000000062 vs. C. finmarchicus
Match: gi|592871769|gb|GAXK01085793.1| (TSA: Calanus finmarchicus comp79683_c1_seq2 transcribed RNA sequence) HSP 1 Score: 106.686 bits (265), Expect = 1.631e-23 Identity = 43/56 (76.79%), Postives = 49/56 (87.50%), Query Frame = 0 Query: 396 LRKDPFD--DDLENNDGSFFPCEFCGDPYPVEYLMRHQLSCDLNPNPVSSGDGFNY 449 +R+DP D DD +NNDGSFFPCEFCGDPYP E+LMRHQ+SCDLNP PVSSG GF+Y Sbjct: 1546 MRRDPMDVEDDPDNNDGSFFPCEFCGDPYPCEFLMRHQMSCDLNPQPVSSGSGFDY 1713 HSP 2 Score: 32.7278 bits (73), Expect = 3.136e+0 Identity = 13/32 (40.62%), Postives = 16/32 (50.00%), Query Frame = 0 Query: 160 LIPCEFCGASINMFKVILHQTKCDRNPDSIGS 191 PCEFCG ++ HQ CD NP + S Sbjct: 1600 FFPCEFCGDPYPCEFLMRHQMSCDLNPQPVSS 1695
BLAST of EMLSAG00000000062 vs. C. finmarchicus
Match: gi|592871770|gb|GAXK01085792.1| (TSA: Calanus finmarchicus comp79683_c1_seq1 transcribed RNA sequence) HSP 1 Score: 106.686 bits (265), Expect = 1.633e-23 Identity = 43/56 (76.79%), Postives = 49/56 (87.50%), Query Frame = 0 Query: 396 LRKDPFD--DDLENNDGSFFPCEFCGDPYPVEYLMRHQLSCDLNPNPVSSGDGFNY 449 +R+DP D DD +NNDGSFFPCEFCGDPYP E+LMRHQ+SCDLNP PVSSG GF+Y Sbjct: 1546 MRRDPMDVEDDPDNNDGSFFPCEFCGDPYPCEFLMRHQMSCDLNPQPVSSGSGFDY 1713 HSP 2 Score: 32.7278 bits (73), Expect = 3.138e+0 Identity = 13/32 (40.62%), Postives = 16/32 (50.00%), Query Frame = 0 Query: 160 LIPCEFCGASINMFKVILHQTKCDRNPDSIGS 191 PCEFCG ++ HQ CD NP + S Sbjct: 1600 FFPCEFCGDPYPCEFLMRHQMSCDLNPQPVSS 1695
BLAST of EMLSAG00000000062 vs. C. finmarchicus
Match: gi|592871768|gb|GAXK01085794.1| (TSA: Calanus finmarchicus comp79683_c1_seq3 transcribed RNA sequence) HSP 1 Score: 104.76 bits (260), Expect = 3.293e-23 Identity = 43/56 (76.79%), Postives = 49/56 (87.50%), Query Frame = 0 Query: 396 LRKDPFD--DDLENNDGSFFPCEFCGDPYPVEYLMRHQLSCDLNPNPVSSGDGFNY 449 +R+DP D DD +NNDGSFFPCEFCGDPYP E+LMRHQ+SCDLNP PVSSG GF+Y Sbjct: 1546 MRRDPMDVEDDPDNNDGSFFPCEFCGDPYPCEFLMRHQMSCDLNPQPVSSGSGFDY 1713 HSP 2 Score: 33.113 bits (74), Expect = 2.431e+0 Identity = 13/32 (40.62%), Postives = 16/32 (50.00%), Query Frame = 0 Query: 160 LIPCEFCGASINMFKVILHQTKCDRNPDSIGS 191 PCEFCG ++ HQ CD NP + S Sbjct: 1600 FFPCEFCGDPYPCEFLMRHQMSCDLNPQPVSS 1695
BLAST of EMLSAG00000000062 vs. C. finmarchicus
Match: gi|592795168|gb|GAXK01159400.1| (TSA: Calanus finmarchicus comp4827554_c0_seq1 transcribed RNA sequence) HSP 1 Score: 31.9574 bits (71), Expect = 1.485e+0 Identity = 20/55 (36.36%), Postives = 29/55 (52.73%), Query Frame = 0 Query: 397 RKDPFDDDL--ENNDGSFFPCEFCGDPYPVEYLMR------HQLSCDLNPNPVSS 443 ++D DD + E+ GS FPC FC +P +Y +R H +S L P P+ S Sbjct: 38 QRDDQDDQVSQEHKRGSLFPCPFCSKTFPNKYDLRSHLVTNHMVSESLKPPPLYS 202
BLAST of EMLSAG00000000062 vs. C. finmarchicus
Match: gi|592762309|gb|GAXK01192104.1| (TSA: Calanus finmarchicus comp40839_c3_seq8 transcribed RNA sequence) HSP 1 Score: 33.113 bits (74), Expect = 2.810e+0 Identity = 14/29 (48.28%), Postives = 17/29 (58.62%), Query Frame = 0 Query: 413 FPCEFCGDPYPVEY-LMRHQLSCDLNPNP 440 FPC FC + V +RH+ C LNPNP Sbjct: 1035 FPCRFCYSAFSVSSNRLRHEKKCKLNPNP 1121
BLAST of EMLSAG00000000062 vs. C. finmarchicus
Match: gi|592762310|gb|GAXK01192103.1| (TSA: Calanus finmarchicus comp40839_c3_seq7 transcribed RNA sequence) HSP 1 Score: 33.113 bits (74), Expect = 2.812e+0 Identity = 14/29 (48.28%), Postives = 17/29 (58.62%), Query Frame = 0 Query: 413 FPCEFCGDPYPVEY-LMRHQLSCDLNPNP 440 FPC FC + V +RH+ C LNPNP Sbjct: 1059 FPCRFCYSAFSVSSNRLRHEKKCKLNPNP 1145
BLAST of EMLSAG00000000062 vs. C. finmarchicus
Match: gi|592762312|gb|GAXK01192101.1| (TSA: Calanus finmarchicus comp40839_c3_seq5 transcribed RNA sequence) HSP 1 Score: 33.113 bits (74), Expect = 2.826e+0 Identity = 14/29 (48.28%), Postives = 17/29 (58.62%), Query Frame = 0 Query: 413 FPCEFCGDPYPVEY-LMRHQLSCDLNPNP 440 FPC FC + V +RH+ C LNPNP Sbjct: 1035 FPCRFCYSAFSVSSNRLRHEKKCKLNPNP 1121
BLAST of EMLSAG00000000062 vs. C. finmarchicus
Match: gi|592762313|gb|GAXK01192100.1| (TSA: Calanus finmarchicus comp40839_c3_seq4 transcribed RNA sequence) HSP 1 Score: 33.113 bits (74), Expect = 2.827e+0 Identity = 14/29 (48.28%), Postives = 17/29 (58.62%), Query Frame = 0 Query: 413 FPCEFCGDPYPVEY-LMRHQLSCDLNPNP 440 FPC FC + V +RH+ C LNPNP Sbjct: 1059 FPCRFCYSAFSVSSNRLRHEKKCKLNPNP 1145
BLAST of EMLSAG00000000062 vs. C. finmarchicus
Match: gi|592762315|gb|GAXK01192098.1| (TSA: Calanus finmarchicus comp40839_c3_seq2 transcribed RNA sequence) HSP 1 Score: 33.113 bits (74), Expect = 2.917e+0 Identity = 14/29 (48.28%), Postives = 17/29 (58.62%), Query Frame = 0 Query: 413 FPCEFCGDPYPVEY-LMRHQLSCDLNPNP 440 FPC FC + V +RH+ C LNPNP Sbjct: 3885 FPCRFCYSAFSVSSNRLRHEKKCKLNPNP 3971
BLAST of EMLSAG00000000062 vs. C. finmarchicus
Match: gi|592762316|gb|GAXK01192097.1| (TSA: Calanus finmarchicus comp40839_c3_seq1 transcribed RNA sequence) HSP 1 Score: 33.113 bits (74), Expect = 2.922e+0 Identity = 14/29 (48.28%), Postives = 17/29 (58.62%), Query Frame = 0 Query: 413 FPCEFCGDPYPVEY-LMRHQLSCDLNPNP 440 FPC FC + V +RH+ C LNPNP Sbjct: 3885 FPCRFCYSAFSVSSNRLRHEKKCKLNPNP 3971
BLAST of EMLSAG00000000062 vs. L. salmonis peptides
Match: EMLSAP00000000062 (pep:novel supercontig:LSalAtl2s:LSalAtl2s100:235381:240232:-1 gene:EMLSAG00000000062 transcript:EMLSAT00000000062 description:"maker-LSalAtl2s100-augustus-gene-2.10") HSP 1 Score: 938.717 bits (2425), Expect = 0.000e+0 Identity = 463/463 (100.00%), Postives = 463/463 (100.00%), Query Frame = 0 Query: 1 MLNEWVKHSEMRLYHELANKPCAEVFGHNDTGGATPWXPLTTTSSSLRNXSDYSWSPPILAGPSSSTFSVTSPTSLLHXRRHSXASSTQPSSSSQIDSSIPDLELISSRKSSLSGMHRVPTSTSPPTSASVYNGSHYQSPTGFDFNIGSEDTKEEEEEILIPCEFCGASINMFKVILHQTKCDRNPDSIGSKQRSHSISQPIEYKSSLNNGPPLVNNDLTTTSTVSSGPIVSDMLSMKDISALTPNTSRRSSLRKDSIVEKYLRQPPQETRTDSNGYTGGARAKTTFKPVPSPMSESKGEESNRKRPQRKVSAPVLLQRPPPHPITKSMTSPKSTPNLQDLGKAEDSYKRSIGSSSQSNLNNDINVKTPQRKYSQVSNGNGDRDDREDLRQLLVNLRKDPFDDDLENNDGSFFPCEFCGDPYPVEYLMRHQLSCDLNPNPVSSGDGFNYDLIRNRIENNLNIE 463 MLNEWVKHSEMRLYHELANKPCAEVFGHNDTGGATPWXPLTTTSSSLRNXSDYSWSPPILAGPSSSTFSVTSPTSLLHXRRHSXASSTQPSSSSQIDSSIPDLELISSRKSSLSGMHRVPTSTSPPTSASVYNGSHYQSPTGFDFNIGSEDTKEEEEEILIPCEFCGASINMFKVILHQTKCDRNPDSIGSKQRSHSISQPIEYKSSLNNGPPLVNNDLTTTSTVSSGPIVSDMLSMKDISALTPNTSRRSSLRKDSIVEKYLRQPPQETRTDSNGYTGGARAKTTFKPVPSPMSESKGEESNRKRPQRKVSAPVLLQRPPPHPITKSMTSPKSTPNLQDLGKAEDSYKRSIGSSSQSNLNNDINVKTPQRKYSQVSNGNGDRDDREDLRQLLVNLRKDPFDDDLENNDGSFFPCEFCGDPYPVEYLMRHQLSCDLNPNPVSSGDGFNYDLIRNRIENNLNIE Sbjct: 1 MLNEWVKHSEMRLYHELANKPCAEVFGHNDTGGATPWXPLTTTSSSLRNXSDYSWSPPILAGPSSSTFSVTSPTSLLHXRRHSXASSTQPSSSSQIDSSIPDLELISSRKSSLSGMHRVPTSTSPPTSASVYNGSHYQSPTGFDFNIGSEDTKEEEEEILIPCEFCGASINMFKVILHQTKCDRNPDSIGSKQRSHSISQPIEYKSSLNNGPPLVNNDLTTTSTVSSGPIVSDMLSMKDISALTPNTSRRSSLRKDSIVEKYLRQPPQETRTDSNGYTGGARAKTTFKPVPSPMSESKGEESNRKRPQRKVSAPVLLQRPPPHPITKSMTSPKSTPNLQDLGKAEDSYKRSIGSSSQSNLNNDINVKTPQRKYSQVSNGNGDRDDREDLRQLLVNLRKDPFDDDLENNDGSFFPCEFCGDPYPVEYLMRHQLSCDLNPNPVSSGDGFNYDLIRNRIENNLNIE 463
BLAST of EMLSAG00000000062 vs. L. salmonis peptides
Match: EMLSAP00000000859 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1148:39650:44909:1 gene:EMLSAG00000000859 transcript:EMLSAT00000000859 description:"maker-LSalAtl2s1148-augustus-gene-0.12") HSP 1 Score: 51.2174 bits (121), Expect = 3.890e-7 Identity = 22/44 (50.00%), Postives = 29/44 (65.91%), Query Frame = 0 Query: 397 RKDPFDDDLENNDGSFFPCEFCGDPYPVEYLMRHQLSCDLNPNP 440 RKD DD E + PCEFCG + +Y+M+HQ+SCD NP+P Sbjct: 265 RKDSSIDDNEE----YLPCEFCGQSFLPDYIMKHQMSCDQNPHP 304 The following BLAST results are available for this feature:
BLAST of EMLSAG00000000062 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000000062 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 10
BLAST of EMLSAG00000000062 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 2
BLAST of EMLSAG00000000062 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000000062 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000000062 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000000062 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s100:235381..240232- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000000062-682828 ID=EMLSAG00000000062-682828|Name=EMLSAG00000000062|organism=Lepeophtheirus salmonis|type=gene|length=4852bp|location=Sequence derived from alignment at LSalAtl2s100:235381..240232- (Lepeophtheirus salmonis)back to top Add to Basket
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