EMLSAG00000000094, EMLSAG00000000094-682860 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000094
Unique NameEMLSAG00000000094-682860
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000094 vs. C. finmarchicus
Match: gi|592881686|gb|GAXK01076380.1| (TSA: Calanus finmarchicus comp99255_c1_seq7 transcribed RNA sequence)

HSP 1 Score: 25.409 bits (54), Expect = 7.488e+0
Identity = 14/34 (41.18%), Postives = 18/34 (52.94%), Query Frame = 0 
Query:    9 QGGRKKDKDSISQNESSNNYPMTDEHEHLELGLQ 42
            +G +    D I QNE SN YP+T   +H  L  Q
Sbjct:    9 RGEKST*NDHICQNEISNEYPITIVKKHFCLKPQ 110
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BLAST of EMLSAG00000000094 vs. L. salmonis peptides
Match: EMLSAP00000000094 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1015:24785:25045:-1 gene:EMLSAG00000000094 transcript:EMLSAT00000000094 description:"maker-LSalAtl2s1015-augustus-gene-0.3")

HSP 1 Score: 87.4261 bits (215), Expect = 8.425e-25
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 0 
Query:    1 MELILHNRQGGRKKDKDSISQNESSNNYPMTDEHEHLELGLQ 42
            MELILHNRQGGRKKDKDSISQNESSNNYPMTDEHEHLELGLQ
Sbjct:    1 MELILHNRQGGRKKDKDSISQNESSNNYPMTDEHEHLELGLQ 42
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000094 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000094 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592881686|gb|GAXK01076380.1|7.488e+041.18TSA: Calanus finmarchicus comp99255_c1_seq7 transc... [more]
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BLAST of EMLSAG00000000094 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000000948.425e-25100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1015:2478... [more]
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BLAST of EMLSAG00000000094 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000094 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000094 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000094 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1015supercontigLSalAtl2s1015:24785..25045 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1015-augustus-gene-0.3
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000094 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000094EMLSAT00000000094-695941Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1015:24785..25045-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000094-682860 ID=EMLSAG00000000094-682860|Name=EMLSAG00000000094|organism=Lepeophtheirus salmonis|type=gene|length=261bp|location=Sequence derived from alignment at LSalAtl2s1015:24785..25045- (Lepeophtheirus salmonis)
AGCATGGAAAAAAATATTAAATTTTTCAGAGGATCAACTACAAAGACCCG
AAAAAGCCTCTGTTCTTTGGAAGTGGGTTATGGAACTGATTCTTCACAAC
CGTCAAGGTGGAAGAAAAAAGGATGTGAGTAAAAAAACACATTTAAATAT
ACTAATCATACGCTTATTTATTTCCAGAAAGACTCTATTTCCCAAAATGA
GTCCAGCAATAATTATCCAATGACAGATGAACATGAACATTTGGAGTTGG
GMCTMCAGMCY
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