EMLSAG00000000156, EMLSAG00000000156-682922 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000156
Unique NameEMLSAG00000000156-682922
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000156 vs. C. finmarchicus
Match: gi|592930322|gb|GAXK01028223.1| (TSA: Calanus finmarchicus comp7979607_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 2.860e-1
Identity = 15/39 (38.46%), Postives = 21/39 (53.85%), Query Frame = 0 
Query:   46 IRLLSHSSKCPQFFLVQICKLPGQFLNKCIVAILLKYYW 84
            I L+S     P FF   I K P  + NKC ++I L ++W
Sbjct:  184 IFLVSIMCNGPCFFFFVIIKNPASYSNKCSISIFLSFFW 300
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BLAST of EMLSAG00000000156 vs. C. finmarchicus
Match: gi|592889044|gb|GAXK01069331.1| (TSA: Calanus finmarchicus comp2982703_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 7.284e+0
Identity = 13/24 (54.17%), Postives = 16/24 (66.67%), Query Frame = 0 
Query:   63 ICKLPGQFLNKCIVAILLKYYWPY 86
            IC +PGQ   KC  AI L +Y+PY
Sbjct:   71 ICPIPGQ--TKCHQAISLHFYFPY 136
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BLAST of EMLSAG00000000156 vs. L. salmonis peptides
Match: EMLSAP00000000156 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1024:172925:176606:1 gene:EMLSAG00000000156 transcript:EMLSAT00000000156 description:"snap_masked-LSalAtl2s1024-processed-gene-1.11")

HSP 1 Score: 200.675 bits (509), Expect = 1.219e-67
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 
Query:    1 MHLKKLKRLLILLFLLIQKKYIYIYTIQHDSFTSRNYNIIRTALIIRLLSHSSKCPQFFLVQICKLPGQFLNKCIVAILLKYYWPYDLNMKCSVFVGINS 100
            MHLKKLKRLLILLFLLIQKKYIYIYTIQHDSFTSRNYNIIRTALIIRLLSHSSKCPQFFLVQICKLPGQFLNKCIVAILLKYYWPYDLNMKCSVFVGINS
Sbjct:    1 MHLKKLKRLLILLFLLIQKKYIYIYTIQHDSFTSRNYNIIRTALIIRLLSHSSKCPQFFLVQICKLPGQFLNKCIVAILLKYYWPYDLNMKCSVFVGINS 100
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000156 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000156 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592930322|gb|GAXK01028223.1|2.860e-138.46TSA: Calanus finmarchicus comp7979607_c0_seq1 tran... [more]
gi|592889044|gb|GAXK01069331.1|7.284e+054.17TSA: Calanus finmarchicus comp2982703_c0_seq1 tran... [more]
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BLAST of EMLSAG00000000156 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000001561.219e-67100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1024:1729... [more]
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BLAST of EMLSAG00000000156 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000156 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000156 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000156 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1024supercontigLSalAtl2s1024:172925..176606 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s1024-processed-gene-1.11
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000156 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000156EMLSAT00000000156-696003Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1024:172925..176606+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000156-682922 ID=EMLSAG00000000156-682922|Name=EMLSAG00000000156|organism=Lepeophtheirus salmonis|type=gene|length=3682bp|location=Sequence derived from alignment at LSalAtl2s1024:172925..176606+ (Lepeophtheirus salmonis)
ATGAGAGTGAGTTTTAATTTAAATTTGTACTCTTCAAGTGTCCTGATGCA
GTTGCATAGTAATAATTCCTTCTGCTTCAATCTTCTTTTCCATATTTTAT
CTATATTTAGATAGATAGACAGAAAGAGGAAGTGAGAGAACGAAGGAAAA
TAATTGTTTATGTCGCGTAACGCGACGAGTTTAGTGGAAAGTCATCGTAA
CTGACAGTATACAATATTATAATTTTTTCACTAAATTAACCCATGCACAT
ATATGTATATGCAGTTGCTCTCTTTTAAATATACTTTACTCTTGAACAAG
TTGGGCTTTTGTACGATTAAATTGTACGTGAGCTACATTTTAAACATACA
AGGGATGAAGATGAGTTATACGATATTTCATATGTTTGGGAATAGTCGCC
TTATTCCTAAGAACTCTACAAATAATAATCTTCAAACTTCAACGATTATC
CTTATGTAGAAACTGAGCAAGATACGTTTTCACCTACAAAAGGCTCGTGT
CGTGTCAGGATTTAAGGACACAATCACGTCTTTACAAAAATATGATGCTT
TGTTAAAAGAAAGGTTAATTATTAATGTGAAACCATTTAGACAAAGTAAC
TACTAAGTTATGGAAACATCTCAGTGACTGATACTTTATCTCCTCAAAAC
CTCCTACTTTTGAAAGGAAGGGATGCAGTATGTTTAGATCAAATATTAAT
AAAAATCCTTATGATTATATATCTAGACTAGTTCTGAAAATCTGAGATAT
GATGATTAAATAGGTGGAAATAAGTCTGTTCCACCTCATTACTAATACCT
GAGTGAATGATTATTAACTGCATATTTAAACCCTACATTCTCAATGAGTT
AATTGTCTGGCATCAATGACTTTTCTCATAAAAATTACAAATCCTTATTT
ATTCTACTTCACGTCACAAGAAAAATCAAGTCTAATAATTTTATCAGACA
TTAAATATGATATATATAATATAACAAATATGATCTCTTTATAGTTGCCT
ATTAAAATTTCAGGTGTTATTACAAAGTGAAGGGCTCCGAACAAATTGCT
GCGGTATAAAATCCCAGATTCTATGAATGAGTAGATGACCATTCTTAGAA
GAAGTATGGCCTCTAATTCCTTATTCGCTTCATTTTAGACGCAGTTCTTT
AATTTCGATAGTCATCGATAATTTTTCGTTTAAAAGTAAAATAATCATCG
AAAATAAATTAAATCTATTTCCTCTCTAAAAATAAGGATACAAACCCCAG
GGMCGTCCGCAGAAGGRGGGGCTGTAGCCCCCCCCCCCCTCCCCAGATAA
ATATATATATATAATTCTGCAGAACCCTATGGGCCCCTTCAACTTTATCA
ATGTAGGAAAAATATTATACTAAATGAAGCTAATGAGCTAGATTCGTTCG
TCTACTATCCTTCATTATATAGTATGGTTTGTACATGAGTGAAGATGAGC
TTCCTCATCCATCATTGGTGTACAAATAGATATGTGTATAGTTTTGGAAC
GGAACAATGAGCAATTTTTTTTATAAATTCTGAAAAAATTTTCATATTAT
AATCTTCAAAGCTCAACAATTTTCTTTTTGAAAATAAATTGGCTCTGTGG
TTTAAAATATTTTTTGTTTGGAGGAGTAAAGCCGGACTACCCCATCTATC
GTTCGTGTACACATTAGTGTATATATATTATATTAACTCTTGTTAATTGA
TTGAAGGAAGTCTCTGTGAGAGCAATTCTTTGTCTGATATCATATATACA
CGCATACACACGATTTCCCCAAACAAAAATATTATAAATCACAGTACCTC
TATATTTTGAGAGGGATAATTGTTGACGTTTAAAGATTATAATTGGAAAG
TTCTTATAAATAAATTACCCTTTGGTTCGTTCAAAAATTATACACGTATT
GCGTCAACAAGCATGATAAATGTGGAAATTCACTTTAAGACAGGATCATC
CTGTAGGGATCTTTATGACCGCTGCGGATTTCGCTTATACTAGAGTTTTT
GTGGAGGGTCTTTTGACTGCATGAAGTTCTGTAGATATGTATCATATAAA
GATTTAGCCGAATGCTTTCGAAATTTATTTTCTTTTTGTCATTATTATTA
TTATTATTATTTTTAACTCATTTTCTTTTTATTATTTTTTAGCAACCAAA
AAGAAAGTTAAATGAACCCACAAGTTCCCCATGGAAAGATGATGATGTTT
ATCTTCCATTATGCGTTGAGAAACTCTCAAAATACCTCCGAATTCTATAA
ATGGAACAAAGAAGCATCTACACATTTAACTTTTTATTATCGTTAAACTT
TAGATTTTTTTTTCTTTCAAAAAAAGTTCTTATATATACAAATTATTTGT
TTTTATGATTCGTACACAATTAATTCAAATTGTCTTCCATCAAGACAATA
GTTTTCCCCATCATGTAATTGGAACCCCAATTATGTGATTCCTTGATCAT
TTTGAAGAATGAATTTACATTTATCTTCTTCCCAGTCATCGGGGACTTTG
TTTCATTCATAACTGATGTATTTTGGTGAAATGGCTCAGTTATTATTATT
CATTATAAAAAACTTGCTCATTAATAGAAATATAGTTTATGTTATAATAA
AATGATTCACTTTTCATCTTTTAAGTAAATTACAGWTCTGCTTCCAGAAG
ASCTGCCACTCTATACCCCATTTCTAGAGTTGTATAAAATATGACCTGTC
GTAAGGTGAAACTAAATTAAATCGAAGAATTGTATGATAACCACGTCATT
TTGAAGAATGTTTGGTAGAAAATCAGCTTTGCTGTCATTACGTTTTATTA
GATTAGCTGTGCGCAGCTATGAGAGAAAATAAATATAATAAAATCCCACT
CTCATGACCACACGCAATAGTTATTTTAGATATTCTCTCTTTAATTATAA
TTAAATAATAATGATAGAAGCTTTAGGAACTAAAAAATACCTTTTCAGAT
TGACAACTAGAAACAAGTCTTGTAGGAGTTAAGATAAYATTTTATGTAAC
TCTACTCATTTCATTCATATCAAACAAAATAGGATTATTATTTATGCACC
TCAAAAAATTAAAACGTCTACTTATTTTATTATTTCTGCTTATACAAAAA
AAATATATATATATATACACCATACAACACGATAGTTTTACATCTAGAAA
CTATAATATTATTCGCACAGCCTTGATTATTCGATTACTTTCCCATTCAT
CTAAATGCCCACAATTTTTTTTGGTCCAAATTTGCAAATTACCTGGGCAA
TTTCTCAACAAATGTATTGTGGCTATTTTGTTAAAATATTACTGGCCATA
TGACCTTAATATGAAATGTTCAGTTTTTGTTGGGATAAATAGTTGAATAT
TTACTTTAAATAAATTACATAAACAAAGCTCGTAATACGACTAAAATTCA
TCGTCAGATCGACAAGATTCAGATTTTAATAAGACTCAAGGCTTGAAACT
TACCAACTCACGTACCCAAAAATTTGCGACTAGACATTCACTCGTATTAA
AATAATGCATGTTACTTTTGAGACTTCACTCGAGCTTATCTCTCAATAAT
TGAGATTCTACTAGTTGTCTTAATTTTTTTGAAATACTTGTAACATTGAA
TCTTTACTTGATATATGTCGAAAGAATTCCATAAAATAATGATCCTCATC
ACATACAATTGTTAATATGGAACCGAATTCTG
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