EMLSAG00000000164, EMLSAG00000000164-682930 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000164
Unique NameEMLSAG00000000164-682930
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000164 vs. GO
Match: - (symbol:mRpL36 "mitochondrial ribosomal protein L36" species:7227 "Drosophila melanogaster" [GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISS] [GO:0003735 "structural constituent of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=IEA] [GO:0032543 "mitochondrial translation" evidence=IC] InterPro:IPR000473 Pfam:PF00444 EMBL:AE014296 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 PANTHER:PTHR18804 SUPFAM:SSF57840 TIGRFAMs:TIGR01022 KO:K02919 CTD:64979 OrthoDB:EOG79CZ1X eggNOG:NOG304857 EMBL:AY102667 RefSeq:NP_652658.1 UniGene:Dm.11991 SMR:Q9I7Q9 STRING:7227.FBpp0076458 EnsemblMetazoa:FBtr0076735 GeneID:59151 KEGG:dme:Dmel_CG18767 FlyBase:FBgn0042112 InParanoid:Q9I7Q9 OMA:SWILTHA GenomeRNAi:59151 NextBio:841539 Uniprot:Q9I7Q9)

HSP 1 Score: 53.5286 bits (127), Expect = 7.173e-9
Identity = 25/62 (40.32%), Postives = 34/62 (54.84%), Query Frame = 0 
Query:   24 LLNQVRGLKFVQFPKKRCPDCYFVFSENRKEVFCTAHPRHRQSTPVLPKKMTYIMTSATQGR 85
            L+ QV G K     K+RC DCY V  + R  V C  HPRH+Q +       ++I+T ATQ +
Sbjct:   63 LVQQVAGFKVKGRLKRRCKDCYIVVRQERGYVICPTHPRHKQMSMKKRDYKSWILTHATQSK 124
[Close]
BLAST of EMLSAG00000000164 vs. GO
Match: - (symbol:SPBC83.06c "mitochondrial ribosomal protein subunit L36, Rtc6 (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0032543 "mitochondrial translation" evidence=NAS] [GO:0003735 "structural constituent of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS] [GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISS] [GO:0005739 "mitochondrion" evidence=IDA] InterPro:IPR000473 Pfam:PF00444 PomBase:SPBC83.06c EMBL:CU329671 GO:GO:0005762 GO:GO:0003735 GO:GO:0032543 HAMAP:MF_00251 PANTHER:PTHR18804 SUPFAM:SSF57840 TIGRFAMs:TIGR01022 KO:K02919 eggNOG:COG0257 HOGENOM:HOG000111586 PIR:T40695 RefSeq:NP_595638.2 MINT:MINT-4686243 STRING:4896.SPBC83.06c-1 GeneID:2540781 KEGG:spo:SPBC83.06c OrthoDB:EOG76TB4H NextBio:20801899 Uniprot:O94690)

HSP 1 Score: 46.9802 bits (110), Expect = 1.148e-6
Identity = 29/62 (46.77%), Postives = 33/62 (53.23%), Query Frame = 0 
Query:    7 GLLSNS---IHKAFSLSQCLL-LNQVRGLKFVQFPKKRCPDCYFVFSENRKEVFCTAHPRHR 64
            GLL N+   +  AF LS  LL  N  RG K     KKRC  CYFV  + R  V C  HPRH+
Sbjct:   27 GLLKNASMFLTPAFRLSPSLLPWNFSRGFKVKASVKKRCSSCYFVRRKGRLYVLCKKHPRHK 88
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BLAST of EMLSAG00000000164 vs. GO
Match: - (symbol:mrpl36 "mitochondrial ribosomal protein L36" species:7955 "Danio rerio" [GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0003735 "structural constituent of ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA] InterPro:IPR000473 Pfam:PF00444 PROSITE:PS00828 ZFIN:ZDB-GENE-060503-821 GO:GO:0005739 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:BX571830 HAMAP:MF_00251 PANTHER:PTHR18804 SUPFAM:SSF57840 TIGRFAMs:TIGR01022 KO:K02919 eggNOG:NOG129164 EMBL:BC142854 RefSeq:NP_001092727.1 RefSeq:XP_005170051.1 UniGene:Dr.74684 ProteinModelPortal:Q1LWG3 STRING:7955.ENSDARP00000094638 Ensembl:ENSDART00000103862 GeneID:100093703 KEGG:dre:100093703 CTD:64979 GeneTree:ENSGT00390000010866 HOGENOM:HOG000111586 InParanoid:Q1LWG3 OrthoDB:EOG79CZ1X TreeFam:TF300275 NextBio:20788633 Bgee:Q1LWG3 Uniprot:Q1LWG3)

HSP 1 Score: 42.743 bits (99), Expect = 3.958e-5
Identity = 21/45 (46.67%), Postives = 26/45 (57.78%), Query Frame = 0 
Query:   21 QCLLLNQVRGLKFVQFPKKRCPDCYFVFSENRKEVFCTAHPRHRQ 65
            Q L +    G+K     KKRC +C+FV    R  VFC AHPRH+Q
Sbjct:   69 QLLCVQPSAGMKTKSALKKRCNECFFVRRRGRLFVFCKAHPRHKQ 113
[Close]
BLAST of EMLSAG00000000164 vs. GO
Match: - (symbol:MRPL36 "39S ribosomal protein L36, mitochondrial" species:9606 "Homo sapiens" [GO:0003735 "structural constituent of ribosome" evidence=IEA] [GO:0005762 "mitochondrial large ribosomal subunit" evidence=NAS] [GO:0006412 "translation" evidence=NAS] InterPro:IPR000473 Pfam:PF00444 GO:GO:0006412 GO:GO:0005762 GO:GO:0003735 EMBL:CH471102 CleanEx:HS_BRIP1 HAMAP:MF_00251 PANTHER:PTHR18804 SUPFAM:SSF57840 TIGRFAMs:TIGR01022 KO:K02919 CTD:64979 HOGENOM:HOG000111586 OrthoDB:EOG79CZ1X TreeFam:TF300275 EMBL:AB049654 EMBL:AF151109 EMBL:EF036487 EMBL:AF155653 EMBL:AK312001 EMBL:BC020642 EMBL:BC104652 RefSeq:NP_115868.1 UniGene:Hs.719465 ProteinModelPortal:Q9P0J6 SMR:Q9P0J6 BioGrid:122366 IntAct:Q9P0J6 MINT:MINT-1526761 STRING:9606.ENSP00000372093 DMDM:24212267 PRIDE:Q9P0J6 DNASU:64979 Ensembl:ENST00000382647 Ensembl:ENST00000505059 Ensembl:ENST00000505818 Ensembl:ENST00000508987 GeneID:64979 KEGG:hsa:64979 UCSC:uc003jcx.4 GeneCards:GC05M001851 HGNC:HGNC:14490 HPA:HPA047238 MIM:611842 neXtProt:NX_Q9P0J6 PharmGKB:PA30967 eggNOG:NOG267357 HOVERGEN:HBG029144 InParanoid:Q9P0J6 OMA:RVTHILV PhylomeDB:Q9P0J6 GenomeRNAi:64979 NextBio:67168 PRO:PR:Q9P0J6 ArrayExpress:Q9P0J6 Bgee:Q9P0J6 CleanEx:HS_MRPL36 Genevestigator:Q9P0J6 Uniprot:Q9P0J6)

HSP 1 Score: 41.5874 bits (96), Expect = 7.943e-5
Identity = 16/28 (57.14%), Postives = 18/28 (64.29%), Query Frame = 0 
Query:   38 KKRCPDCYFVFSENRKEVFCTAHPRHRQ 65
            KKRC DCY V    R  V+C  HPRH+Q
Sbjct:   73 KKRCKDCYLVKRRGRWYVYCKTHPRHKQ 100
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BLAST of EMLSAG00000000164 vs. C. finmarchicus
Match: gi|592807271|gb|GAXK01147297.1| (TSA: Calanus finmarchicus comp42978_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 58.9214 bits (141), Expect = 4.258e-11
Identity = 35/86 (40.70%), Postives = 46/86 (53.49%), Query Frame = 0 
Query:   23 LLLNQVRGLKFVQFPKKRCPDCYFVFSENRKEVFCTAHPRHRQSTPVLPKKM-TYIMTSATQGRSTR---QGNTRMLTQSNFRLDF 104
            +L  Q  G+K V     RC  CYF   + ++ V CTA PRH Q+     KK    I T ATQG S +   +G+  M TQ +FRLD+
Sbjct:   54 VLTTQSAGIKHVGELSLRCRHCYFAVKDEQRFVMCTAKPRHYQAQKAPGKKWGMMIFTHATQGSSKKNNGKGSRHMNTQHSFRLDY 311
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BLAST of EMLSAG00000000164 vs. C. finmarchicus
Match: gi|592809975|gb|GAXK01144593.1| (TSA: Calanus finmarchicus comp58031_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.9574 bits (71), Expect = 3.099e-1
Identity = 18/47 (38.30%), Postives = 25/47 (53.19%), Query Frame = 0 
Query:   22 CLLLNQVRGLK-FVQFPK----KRCPDCYFVFSENRKEVFCTAHPRH 63
            C  LNQ+  +K   + PK    + CP CY+ F +N  +V C  HPR 
Sbjct: 4118 CCSLNQLEDMKKNFELPKGLIGQTCPTCYYNFRKNFCDVTC--HPRQ 4252
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BLAST of EMLSAG00000000164 vs. C. finmarchicus
Match: gi|592886367|gb|GAXK01072008.1| (TSA: Calanus finmarchicus comp550826_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 7.443e-1
Identity = 18/44 (40.91%), Postives = 24/44 (54.55%), Query Frame = 0 
Query:   13 IHKAFSLSQCLLL---NQVRGLKFVQFPKKRCPDCYFVFSENRK 53
            I K + +SQ L L   N++R    +   KKRCP+ Y    ENRK
Sbjct:  500 ISKDYRISQALNLSDRNKIRTTLQISEEKKRCPELY-SLDENRK 628
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BLAST of EMLSAG00000000164 vs. C. finmarchicus
Match: gi|592886368|gb|GAXK01072007.1| (TSA: Calanus finmarchicus comp550826_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 7.755e-1
Identity = 18/44 (40.91%), Postives = 24/44 (54.55%), Query Frame = 0 
Query:   13 IHKAFSLSQCLLL---NQVRGLKFVQFPKKRCPDCYFVFSENRK 53
            I K + +SQ L L   N++R    +   KKRCP+ Y    ENRK
Sbjct:  500 ISKDYRISQALNLSDRNKIRTTLQISEEKKRCPELY-SLDENRK 628
[Close]
BLAST of EMLSAG00000000164 vs. C. finmarchicus
Match: gi|592795739|gb|GAXK01158829.1| (TSA: Calanus finmarchicus comp67444_c0_seq5 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 3.500e+0
Identity = 17/53 (32.08%), Postives = 22/53 (41.51%), Query Frame = 0 
Query:    5 LGGLLSNSIHKAFSLSQCLLLNQVRGLKFVQFPKKRCPDCYFVFSENRKEVFC 57
            +  +L N   K FS    L   +   L + QF KK C D  FV      +V C
Sbjct:  211 MEAVLDNVDTKQFSAKLVLQDGEAVSLPYEQFSKKFCDDVVFVPRRKDVDVIC 369
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BLAST of EMLSAG00000000164 vs. L. salmonis peptides
Match: EMLSAP00000000164 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1025:115779:116093:1 gene:EMLSAG00000000164 transcript:EMLSAT00000000164 description:"augustus_masked-LSalAtl2s1025-processed-gene-0.13")

HSP 1 Score: 216.853 bits (551), Expect = 7.600e-74
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0 
Query:    1 MTSILGGLLSNSIHKAFSLSQCLLLNQVRGLKFVQFPKKRCPDCYFVFSENRKEVFCTAHPRHRQSTPVLPKKMTYIMTSATQGRSTRQGNTRMLTQSNFRLDF 104
            MTSILGGLLSNSIHKAFSLSQCLLLNQVRGLKFVQFPKKRCPDCYFVFSENRKEVFCTAHPRHRQSTPVLPKKMTYIMTSATQGRSTRQGNTRMLTQSNFRLDF
Sbjct:    1 MTSILGGLLSNSIHKAFSLSQCLLLNQVRGLKFVQFPKKRCPDCYFVFSENRKEVFCTAHPRHRQSTPVLPKKMTYIMTSATQGRSTRQGNTRMLTQSNFRLDF 104
[Close]
BLAST of EMLSAG00000000164 vs. SwissProt
Match: gi|408360189|sp|O94690.2|RTC6_SCHPO (RecName: Full=54S ribosomal protein c83.06c, mitochondrial; Flags: Precursor)

HSP 1 Score: 46.9802 bits (110), Expect = 5.451e-7
Identity = 29/62 (46.77%), Postives = 33/62 (53.23%), Query Frame = 0 
Query:    7 GLLSNS---IHKAFSLSQCLL-LNQVRGLKFVQFPKKRCPDCYFVFSENRKEVFCTAHPRHR 64
            GLL N+   +  AF LS  LL  N  RG K     KKRC  CYFV  + R  V C  HPRH+
Sbjct:   27 GLLKNASMFLTPAFRLSPSLLPWNFSRGFKVKASVKKRCSSCYFVRRKGRLYVLCKKHPRHK 88
[Close]
BLAST of EMLSAG00000000164 vs. Select Arthropod Genomes
Match: EAA11645.5 (AGAP005927-PA [Anopheles gambiae str. PEST])

HSP 1 Score: 55.4546 bits (132), Expect = 3.258e-10
Identity = 26/59 (44.07%), Postives = 34/59 (57.63%), Query Frame = 0 
Query:   28 VRGLKFVQFPKKRCPDCYFVFSENRKEVFCTAHPRHRQSTPVLPKKMTYIMTSATQGRS 86
            V G K     K+RC DCYFV  + R  V C  HPRH+Q +       T+I+T ATQG++
Sbjct:   75 VSGFKVKGRLKRRCKDCYFVMRQERLYVICKTHPRHKQMSMKKHDHNTWILTDATQGKA 133
[Close]
BLAST of EMLSAG00000000164 vs. Select Arthropod Genomes
Match: AAG22323.1 (mitochondrial ribosomal protein L36 [Drosophila melanogaster])

HSP 1 Score: 53.5286 bits (127), Expect = 1.414e-9
Identity = 25/62 (40.32%), Postives = 34/62 (54.84%), Query Frame = 0 
Query:   24 LLNQVRGLKFVQFPKKRCPDCYFVFSENRKEVFCTAHPRHRQSTPVLPKKMTYIMTSATQGR 85
            L+ QV G K     K+RC DCY V  + R  V C  HPRH+Q +       ++I+T ATQ +
Sbjct:   63 LVQQVAGFKVKGRLKRRCKDCYIVVRQERGYVICPTHPRHKQMSMKKRDYKSWILTHATQSK 124
[Close]
BLAST of EMLSAG00000000164 vs. Select Arthropod Genomes
Match: gb|KFM59693.1| (39S ribosomal protein L36, mitochondrial, partial [Stegodyphus mimosarum])

HSP 1 Score: 50.8322 bits (120), Expect = 1.200e-8
Identity = 25/60 (41.67%), Postives = 32/60 (53.33%), Query Frame = 0 
Query:   25 LNQVRGLKFVQFPKKRCPDCYFVFSENRKEVFCTAHPRHRQSTPVLPKKMTYIMTSATQG 84
            + Q RG K      KRC DCYF   + R  VFC  HPRH+Q   +  K + +I+T  T G
Sbjct:   55 ITQFRGFKDKDVLTKRCKDCYFQRLDGRWYVFCKTHPRHKQRQKIDEKNL-WIITHYTHG 113
[Close]
BLAST of EMLSAG00000000164 vs. Select Arthropod Genomes
Match: EFX68183.1 (hypothetical protein DAPPUDRAFT_301505 [Daphnia pulex])

HSP 1 Score: 50.8322 bits (120), Expect = 1.313e-8
Identity = 24/55 (43.64%), Postives = 31/55 (56.36%), Query Frame = 0 
Query:   30 GLKFVQFPKKRCPDCYFVFSENRKEVFCTAHPRHRQSTPVLPKKMTYIMTSATQG 84
            G K V  P KRC DCY V  + R  + C   PRH+Q +    +  T+I+TSAT G
Sbjct:   64 GFKVVGKPMKRCKDCYKVVRQERVHIICKTKPRHKQMSMKKDEDKTWILTSATMG 118
[Close]
BLAST of EMLSAG00000000164 vs. nr
Match: gi|1121160225|ref|XP_019525839.1| (PREDICTED: 39S ribosomal protein L36, mitochondrial-like [Aedes albopictus])

HSP 1 Score: 55.4546 bits (132), Expect = 1.464e-7
Identity = 26/61 (42.62%), Postives = 35/61 (57.38%), Query Frame = 0 
Query:   24 LLNQVRGLKFVQFPKKRCPDCYFVFSENRKEVFCTAHPRHRQSTPVLPKKMTYIMTSATQG 84
            ++N   G K     K+RC DC+FV    R  V C  HPRH+Q +    +K T+I+T ATQG
Sbjct:   71 MVNPACGFKVKGHLKRRCKDCFFVVRHQRLYVICKTHPRHKQMSMKKREKNTWILTDATQG 131
[Close]
BLAST of EMLSAG00000000164 vs. nr
Match: gi|1000201326|gb|KXJ73834.1| (hypothetical protein RP20_CCG014896 [Aedes albopictus])

HSP 1 Score: 55.4546 bits (132), Expect = 1.464e-7
Identity = 26/61 (42.62%), Postives = 35/61 (57.38%), Query Frame = 0 
Query:   24 LLNQVRGLKFVQFPKKRCPDCYFVFSENRKEVFCTAHPRHRQSTPVLPKKMTYIMTSATQG 84
            ++N   G K     K+RC DC+FV    R  V C  HPRH+Q +    +K T+I+T ATQG
Sbjct:   71 MVNPACGFKVKGHLKRRCKDCFFVVRHQRLYVICKTHPRHKQMSMKKREKNTWILTDATQG 131
[Close]
BLAST of EMLSAG00000000164 vs. nr
Match: gi|1121153215|ref|XP_019563455.1| (PREDICTED: 39S ribosomal protein L36, mitochondrial-like [Aedes albopictus])

HSP 1 Score: 55.4546 bits (132), Expect = 1.479e-7
Identity = 26/61 (42.62%), Postives = 35/61 (57.38%), Query Frame = 0 
Query:   24 LLNQVRGLKFVQFPKKRCPDCYFVFSENRKEVFCTAHPRHRQSTPVLPKKMTYIMTSATQG 84
            ++N   G K     K+RC DC+FV    R  V C  HPRH+Q +    +K T+I+T ATQG
Sbjct:   71 MVNPACGFKVKGHLKRRCKDCFFVVRHQRLYVICKTHPRHKQMSMKKREKNTWILTDATQG 131
[Close]
BLAST of EMLSAG00000000164 vs. nr
Match: gi|158295012|ref|XP_315957.4| (AGAP005927-PA [Anopheles gambiae str. PEST] >gi|157015833|gb|EAA11645.5| AGAP005927-PA [Anopheles gambiae str. PEST])

HSP 1 Score: 55.4546 bits (132), Expect = 1.594e-7
Identity = 26/59 (44.07%), Postives = 34/59 (57.63%), Query Frame = 0 
Query:   28 VRGLKFVQFPKKRCPDCYFVFSENRKEVFCTAHPRHRQSTPVLPKKMTYIMTSATQGRS 86
            V G K     K+RC DCYFV  + R  V C  HPRH+Q +       T+I+T ATQG++
Sbjct:   75 VSGFKVKGRLKRRCKDCYFVMRQERLYVICKTHPRHKQMSMKKHDHNTWILTDATQGKA 133
[Close]
BLAST of EMLSAG00000000164 vs. nr
Match: gi|1134470865|gb|JAV24969.1| (putative mitochondrial ribosomal protein l36 [Culex tarsalis])

HSP 1 Score: 55.0694 bits (131), Expect = 1.822e-7
Identity = 28/61 (45.90%), Postives = 36/61 (59.02%), Query Frame = 0 
Query:   24 LLNQVRGLKFVQFPKKRCPDCYFVFSENRKEVFCTAHPRHRQSTPVLPKKMTYIMTSATQG 84
            LL+QV G K     K+RC DCYFV  + R  V C  HPRH+Q +    +  T+I+T ATQ 
Sbjct:   73 LLSQVCGFKVKGRLKRRCKDCYFVVRQQRLFVICKTHPRHKQMSMKKREHNTWILTDATQS 133
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000164 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 4
Match NameE-valueIdentityDescription
-7.173e-940.32symbol:mRpL36 "mitochondrial ribosomal protein L36... [more]
-1.148e-646.77symbol:SPBC83.06c "mitochondrial ribosomal protein... [more]
-3.958e-546.67symbol:mrpl36 "mitochondrial ribosomal protein L36... [more]
-7.943e-557.14symbol:MRPL36 "39S ribosomal protein L36, mitochon... [more]
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BLAST of EMLSAG00000000164 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 5
Match NameE-valueIdentityDescription
gi|592807271|gb|GAXK01147297.1|4.258e-1140.70TSA: Calanus finmarchicus comp42978_c0_seq1 transc... [more]
gi|592809975|gb|GAXK01144593.1|3.099e-138.30TSA: Calanus finmarchicus comp58031_c0_seq1 transc... [more]
gi|592886367|gb|GAXK01072008.1|7.443e-140.91TSA: Calanus finmarchicus comp550826_c0_seq2 trans... [more]
gi|592886368|gb|GAXK01072007.1|7.755e-140.91TSA: Calanus finmarchicus comp550826_c0_seq1 trans... [more]
gi|592795739|gb|GAXK01158829.1|3.500e+032.08TSA: Calanus finmarchicus comp67444_c0_seq5 transc... [more]
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BLAST of EMLSAG00000000164 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000001647.600e-74100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1025:1157... [more]
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BLAST of EMLSAG00000000164 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
gi|408360189|sp|O94690.2|RTC6_SCHPO5.451e-746.77RecName: Full=54S ribosomal protein c83.06c, mitoc... [more]
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BLAST of EMLSAG00000000164 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 4
Match NameE-valueIdentityDescription
EAA11645.53.258e-1044.07AGAP005927-PA [Anopheles gambiae str. PEST][more]
AAG22323.11.414e-940.32mitochondrial ribosomal protein L36 [Drosophila me... [more]
gb|KFM59693.1|1.200e-841.6739S ribosomal protein L36, mitochondrial, partial ... [more]
EFX68183.11.313e-843.64hypothetical protein DAPPUDRAFT_301505 [Daphnia pu... [more]
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BLAST of EMLSAG00000000164 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 25
Match NameE-valueIdentityDescription
gi|1121160225|ref|XP_019525839.1|1.464e-742.62PREDICTED: 39S ribosomal protein L36, mitochondria... [more]
gi|1000201326|gb|KXJ73834.1|1.464e-742.62hypothetical protein RP20_CCG014896 [Aedes albopic... [more]
gi|1121153215|ref|XP_019563455.1|1.479e-742.62PREDICTED: 39S ribosomal protein L36, mitochondria... [more]
gi|158295012|ref|XP_315957.4|1.594e-744.07AGAP005927-PA [Anopheles gambiae str. PEST] >gi|15... [more]
gi|1134470865|gb|JAV24969.1|1.822e-745.90putative mitochondrial ribosomal protein l36 [Cule... [more]

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BLAST of EMLSAG00000000164 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1025supercontigLSalAtl2s1025:115779..116093 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus_masked-LSalAtl2s1025-processed-gene-0.13
Biotypeprotein_coding
EvidenceIEA
Note54S ribosomal protein c83.06c, mitochondrial
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000164 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000164EMLSAT00000000164-696011Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1025:115779..116093+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000164-682930 ID=EMLSAG00000000164-682930|Name=EMLSAG00000000164|organism=Lepeophtheirus salmonis|type=gene|length=315bp|location=Sequence derived from alignment at LSalAtl2s1025:115779..116093+ (Lepeophtheirus salmonis)
ATGACATCTATTCTAGGAGGACTCCTTTCCAACTCTATTCATAAGGCATT
TAGTTTAAGTCAATGCCTTCTGCTAAATCAAGTCCGTGGATTGAAATTCG
TCCAATTCCCTAAAAAACGTTGCCCAGACTGTTATTTCGTGTTCAGTGAG
AATCGGAAGGAAGTATTTTGTACAGCACATCCACGACACCGACAGTCCAC
TCCTGTTCTCCCCAAGAAAATGACCTACATTATGACGAGCGCAACTCAAG
GAAGATCCACTCGGCAAGGGAATACCCGAATGTTGACACAAAGCAACTTT
AGGCTAGATTTCTAA
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