EMLSAG00000000192, EMLSAG00000000192-682958 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000192
Unique NameEMLSAG00000000192-682958
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000192 vs. C. finmarchicus
Match: gi|592931372|gb|GAXK01027181.1| (TSA: Calanus finmarchicus comp9138799_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 3.189e+0
Identity = 12/31 (38.71%), Postives = 17/31 (54.84%), Query Frame = 0 
Query:   14 VAKYSKSRISFWAFIKSPNGWDDKRLAKGFD 44
            +A  S  R++FWA   +  GWD   L+  FD
Sbjct:  103 LAGNSTKRMAFWAISGAAGGWDTATLSYPFD 195
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BLAST of EMLSAG00000000192 vs. L. salmonis peptides
Match: EMLSAP00000000192 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1029:171077:171730:1 gene:EMLSAG00000000192 transcript:EMLSAT00000000192 description:"maker-LSalAtl2s1029-snap-gene-1.44")

HSP 1 Score: 158.688 bits (400), Expect = 8.043e-52
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0 
Query:    1 MKMMATIRNKFQGVAKYSKSRISFWAFIKSPNGWDDKRLAKGFDVQTWTHLKIDHYHIGNIHIYLSNKRFNRIYNN 76
            MKMMATIRNKFQGVAKYSKSRISFWAFIKSPNGWDDKRLAKGFDVQTWTHLKIDHYHIGNIHIYLSNKRFNRIYNN
Sbjct:    1 MKMMATIRNKFQGVAKYSKSRISFWAFIKSPNGWDDKRLAKGFDVQTWTHLKIDHYHIGNIHIYLSNKRFNRIYNN 76
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000192 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000192 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592931372|gb|GAXK01027181.1|3.189e+038.71TSA: Calanus finmarchicus comp9138799_c0_seq1 tran... [more]
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BLAST of EMLSAG00000000192 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000001928.043e-52100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1029:1710... [more]
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BLAST of EMLSAG00000000192 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000192 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000192 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000192 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1029supercontigLSalAtl2s1029:171077..171730 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1029-snap-gene-1.44
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000192 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000192EMLSAT00000000192-696039Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1029:171077..171730+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000192-682958 ID=EMLSAG00000000192-682958|Name=EMLSAG00000000192|organism=Lepeophtheirus salmonis|type=gene|length=654bp|location=Sequence derived from alignment at LSalAtl2s1029:171077..171730+ (Lepeophtheirus salmonis)
ATGAAAATGATGGCTACCATTAGAAACAAATTTCAGGGAGTGGCTAAATA
TTCAAAATCTCGAATTTCCTTTTGGGCCTTCGTTAAGAAACTCATGTCCT
AGGCCATTGCCACATTTTCCGCAAGAAACCTTAATAAAAAAAAGTAAGTT
TAATTAATAATATAATTTCATTAAAATATAAATTTAGCCAGGGAAAACAT
TATATACTTTATATGCGTTTTTCCTTTCTTGTTTTTTAGATAAAGAGTCC
GAACGGATGGGATGATAAAAGGCTGGCCAAGGGGTTTGATGTTCAAACTT
GGACTCACTTGAAAATAGATCATTATCACATTGGGAACATACATATTTAC
CTGTCGAATAAGAGATTTAATAGAATATATAATAATTAAATATATCTACA
TTCAAATCTTTCAATATTAATTAGAAAAATATATAATACCCGAGGAAAAA
TGATCCCGATACACTTCTCCTTTATTCCATCTAGAGCAAAATGACATACT
AGCTATATTAAAATTAAACTCTACTCGGCGTAATAAACTAAACTACGTTT
TTATTGTTTAAATTCGTGATAATAAAAAAATATCCAAAAGTGAGGCTAAA
AAGAGAGCAAGAAATCATATCAGTAAGCTGAAAAATAGCTGATAAACCCC
CTTT
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