EMLSAG00000000199, EMLSAG00000000199-682965 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000199
Unique NameEMLSAG00000000199-682965
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000199 vs. C. finmarchicus
Match: gi|592893791|gb|GAXK01064584.1| (TSA: Calanus finmarchicus comp584462_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 60.077 bits (144), Expect = 2.432e-8
Identity = 33/69 (47.83%), Postives = 42/69 (60.87%), Query Frame = 0 
Query:    1 MSHPPYRTRSDTLKLQRLIHTLKERGSNFANVLETTASNFLSDVKKDKTVVPSIPHYDPGDDSDGSSFE 69
            MS P Y+T+SDT+ L+RLI+ LKERGS  A  LE  A NFL+DV+  +   P        DD  GS +E
Sbjct:  103 MSRPGYKTKSDTMLLRRLINNLKERGSEVAGELERKAHNFLTDVQIKRKKKPE--ETFESDDESGSDWE 303
[Close]
BLAST of EMLSAG00000000199 vs. C. finmarchicus
Match: gi|592893790|gb|GAXK01064585.1| (TSA: Calanus finmarchicus comp584462_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 59.6918 bits (143), Expect = 2.936e-8
Identity = 33/69 (47.83%), Postives = 42/69 (60.87%), Query Frame = 0 
Query:    1 MSHPPYRTRSDTLKLQRLIHTLKERGSNFANVLETTASNFLSDVKKDKTVVPSIPHYDPGDDSDGSSFE 69
            MS P Y+T+SDT+ L+RLI+ LKERGS  A  LE  A NFL+DV+  +   P        DD  GS +E
Sbjct:   18 MSRPGYKTKSDTMLLRRLINNLKERGSEVAGELERKAHNFLTDVQIKRKKKPE--ETFESDDESGSDWE 218
[Close]
BLAST of EMLSAG00000000199 vs. C. finmarchicus
Match: gi|592790458|gb|GAXK01164110.1| (TSA: Calanus finmarchicus comp2727860_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 51.2174 bits (121), Expect = 5.069e-6
Identity = 30/53 (56.60%), Postives = 36/53 (67.92%), Query Frame = 0 
Query:    1 MSHPPYRTRSDTLKLQRLIHTLKERGSNFANVLETTASNFLSDV--KKDKTVV 51
            MSH  Y+T S+TL L+RLI  LKERGS+ A  LE  A + LSDV  +K KT V
Sbjct:   24 MSHTTYKTTSNTLLLRRLISNLKERGSDVAGELEGRALDLLSDVQTRKKKTKV 182
[Close]
BLAST of EMLSAG00000000199 vs. C. finmarchicus
Match: gi|592835970|gb|GAXK01121574.1| (TSA: Calanus finmarchicus comp233931_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 48.1358 bits (113), Expect = 8.684e-5
Identity = 24/51 (47.06%), Postives = 35/51 (68.63%), Query Frame = 0 
Query:    6 YRTRSDTLKLQRLIHTLKERGSNFANVLETTASNFLSDVKKDKTVVPSIPH 56
            Y+TRSD+L L+R I  LKE GS+  + LE+ A++FLS V+  +T   +IP 
Sbjct:   44 YKTRSDSLMLRRQIRHLKESGSDLGDDLESDAASFLSGVQIVRTRNRNIPE 196
[Close]
BLAST of EMLSAG00000000199 vs. C. finmarchicus
Match: gi|592774429|gb|GAXK01180139.1| (TSA: Calanus finmarchicus comp914338_c2_seq2 transcribed RNA sequence)

HSP 1 Score: 43.8986 bits (102), Expect = 1.996e-3
Identity = 26/76 (34.21%), Postives = 37/76 (48.68%), Query Frame = 0 
Query:    1 MSHPPYRTRSDTLKLQRLIHTLKERGSNFANVLETTASNFLSD---VKKDKTVVPSIPHYDPGDDSDGSSFEGYPE 73
            M+    RT SDTLKL+RLI +LK  GS+ A  LE  ++        V+ D   +     +D  D+ D   F  + E
Sbjct:   60 MASRYSRTSSDTLKLRRLITSLKTSGSDLATKLEDQSAQIFGGVQIVRSDNPCISKQARFDSDDEEDTCEFLNHAE 287
[Close]
BLAST of EMLSAG00000000199 vs. C. finmarchicus
Match: gi|592774430|gb|GAXK01180138.1| (TSA: Calanus finmarchicus comp914338_c2_seq1 transcribed RNA sequence)

HSP 1 Score: 43.8986 bits (102), Expect = 2.002e-3
Identity = 26/76 (34.21%), Postives = 37/76 (48.68%), Query Frame = 0 
Query:    1 MSHPPYRTRSDTLKLQRLIHTLKERGSNFANVLETTASNFLSD---VKKDKTVVPSIPHYDPGDDSDGSSFEGYPE 73
            M+    RT SDTLKL+RLI +LK  GS+ A  LE  ++        V+ D   +     +D  D+ D   F  + E
Sbjct:   60 MASRYSRTSSDTLKLRRLITSLKTSGSDLATKLEDQSAQIFGGVQIVRSDNPCISKQARFDSDDEEDTCEFLNHAE 287
[Close]
BLAST of EMLSAG00000000199 vs. C. finmarchicus
Match: gi|592811246|gb|GAXK01143322.1| (TSA: Calanus finmarchicus comp2146589_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 35.4242 bits (80), Expect = 1.143e+0
Identity = 17/56 (30.36%), Postives = 39/56 (69.64%), Query Frame = 0 
Query:  645 EDTNITNVTKEERVQNNILKQRKSIEHSRQSIDLKENTDDKLHVEINKGECTKVHI 700
            +D N   +T+ + VQN ++KQ++S++  +++ D+KE   D+  +E+N+G+ T++ +
Sbjct: 2339 QDKNAVGLTQNQNVQNKVVKQQQSVDLVQRN-DMKEFLKDEDPLELNQGKGTRIFL 2503
[Close]
BLAST of EMLSAG00000000199 vs. L. salmonis peptides
Match: EMLSAP00000000199 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1029:45097:47559:-1 gene:EMLSAG00000000199 transcript:EMLSAT00000000199 description:"augustus_masked-LSalAtl2s1029-processed-gene-0.1")

HSP 1 Score: 1649.8 bits (4271), Expect = 0.000e+0
Identity = 820/820 (100.00%), Postives = 820/820 (100.00%), Query Frame = 0 
Query:    1 MSHPPYRTRSDTLKLQRLIHTLKERGSNFANVLETTASNFLSDVKKDKTVVPSIPHYDPGDDSDGSSFEGYPEAKDGEEEEWGSDWEEDTGEEDKCALQDAQFQCDINVTKEPATCSRNASYDYAPTHDSKKNETETGSKQLTLNSKKLDCDDSISLKLSYTQSLDKTISTKSVPFSKKITIPEGIQHNDDSKREILSISKYPYRVSTDQKKILKDNNQDPIFSTKTSELSSVLKDSPVLPSKFSEKKSLLSPSKELNVKLNDTYQEHRESNSIKVMSTKEQKLSIETSDINDEVEQLNERSIEDFKIQATSKAISMDLLENDSCNNAPLQKIDENGDGISCCINNSILENDEDFNVTTLQEDRELSRQDDVITNFQKRIEESIETPCYKDFNTDLIKCIPKDNHTSNVNKVAKKTIDKKKSKITYSKEVTLSSSAPATIQEKHQELKNTKCLIKELKKDSSSSHQEIMRVSSEKQIGPIRKSAQNKLTNEKKSYPCMKERECTKVEISKNKSYTSSIKSKEDFKERKKSVDKEETECITHIKEKPSVLSNTRLTIKSDFTETKCTEMKNSSAVTSKKDSFSQNAKHLCTLSKSGCLIDRASSSDSHKSSVEQNHIVNNNDILLKNTNSNIANESSNNENIKSLEDTNITNVTKEERVQNNILKQRKSIEHSRQSIDLKENTDDKLHVEINKGECTKVHIPASKLENNNKSNESPPSPTCKQIKHVSFDMTDSSNLPETEDSDVLLHEEKLQTVEPSQEISSTPVEEPFSYQNENKKEESNNSISNLTPKKKNTKPGRRSQTLAALWRKNKEKQRKTSNI 820
            MSHPPYRTRSDTLKLQRLIHTLKERGSNFANVLETTASNFLSDVKKDKTVVPSIPHYDPGDDSDGSSFEGYPEAKDGEEEEWGSDWEEDTGEEDKCALQDAQFQCDINVTKEPATCSRNASYDYAPTHDSKKNETETGSKQLTLNSKKLDCDDSISLKLSYTQSLDKTISTKSVPFSKKITIPEGIQHNDDSKREILSISKYPYRVSTDQKKILKDNNQDPIFSTKTSELSSVLKDSPVLPSKFSEKKSLLSPSKELNVKLNDTYQEHRESNSIKVMSTKEQKLSIETSDINDEVEQLNERSIEDFKIQATSKAISMDLLENDSCNNAPLQKIDENGDGISCCINNSILENDEDFNVTTLQEDRELSRQDDVITNFQKRIEESIETPCYKDFNTDLIKCIPKDNHTSNVNKVAKKTIDKKKSKITYSKEVTLSSSAPATIQEKHQELKNTKCLIKELKKDSSSSHQEIMRVSSEKQIGPIRKSAQNKLTNEKKSYPCMKERECTKVEISKNKSYTSSIKSKEDFKERKKSVDKEETECITHIKEKPSVLSNTRLTIKSDFTETKCTEMKNSSAVTSKKDSFSQNAKHLCTLSKSGCLIDRASSSDSHKSSVEQNHIVNNNDILLKNTNSNIANESSNNENIKSLEDTNITNVTKEERVQNNILKQRKSIEHSRQSIDLKENTDDKLHVEINKGECTKVHIPASKLENNNKSNESPPSPTCKQIKHVSFDMTDSSNLPETEDSDVLLHEEKLQTVEPSQEISSTPVEEPFSYQNENKKEESNNSISNLTPKKKNTKPGRRSQTLAALWRKNKEKQRKTSNI
Sbjct:    1 MSHPPYRTRSDTLKLQRLIHTLKERGSNFANVLETTASNFLSDVKKDKTVVPSIPHYDPGDDSDGSSFEGYPEAKDGEEEEWGSDWEEDTGEEDKCALQDAQFQCDINVTKEPATCSRNASYDYAPTHDSKKNETETGSKQLTLNSKKLDCDDSISLKLSYTQSLDKTISTKSVPFSKKITIPEGIQHNDDSKREILSISKYPYRVSTDQKKILKDNNQDPIFSTKTSELSSVLKDSPVLPSKFSEKKSLLSPSKELNVKLNDTYQEHRESNSIKVMSTKEQKLSIETSDINDEVEQLNERSIEDFKIQATSKAISMDLLENDSCNNAPLQKIDENGDGISCCINNSILENDEDFNVTTLQEDRELSRQDDVITNFQKRIEESIETPCYKDFNTDLIKCIPKDNHTSNVNKVAKKTIDKKKSKITYSKEVTLSSSAPATIQEKHQELKNTKCLIKELKKDSSSSHQEIMRVSSEKQIGPIRKSAQNKLTNEKKSYPCMKERECTKVEISKNKSYTSSIKSKEDFKERKKSVDKEETECITHIKEKPSVLSNTRLTIKSDFTETKCTEMKNSSAVTSKKDSFSQNAKHLCTLSKSGCLIDRASSSDSHKSSVEQNHIVNNNDILLKNTNSNIANESSNNENIKSLEDTNITNVTKEERVQNNILKQRKSIEHSRQSIDLKENTDDKLHVEINKGECTKVHIPASKLENNNKSNESPPSPTCKQIKHVSFDMTDSSNLPETEDSDVLLHEEKLQTVEPSQEISSTPVEEPFSYQNENKKEESNNSISNLTPKKKNTKPGRRSQTLAALWRKNKEKQRKTSNI 820
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000199 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000199 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 7
Match NameE-valueIdentityDescription
gi|592893791|gb|GAXK01064584.1|2.432e-847.83TSA: Calanus finmarchicus comp584462_c0_seq1 trans... [more]
gi|592893790|gb|GAXK01064585.1|2.936e-847.83TSA: Calanus finmarchicus comp584462_c0_seq2 trans... [more]
gi|592790458|gb|GAXK01164110.1|5.069e-656.60TSA: Calanus finmarchicus comp2727860_c0_seq1 tran... [more]
gi|592835970|gb|GAXK01121574.1|8.684e-547.06TSA: Calanus finmarchicus comp233931_c0_seq1 trans... [more]
gi|592774429|gb|GAXK01180139.1|1.996e-334.21TSA: Calanus finmarchicus comp914338_c2_seq2 trans... [more]
gi|592774430|gb|GAXK01180138.1|2.002e-334.21TSA: Calanus finmarchicus comp914338_c2_seq1 trans... [more]
gi|592811246|gb|GAXK01143322.1|1.143e+030.36TSA: Calanus finmarchicus comp2146589_c0_seq1 tran... [more]
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BLAST of EMLSAG00000000199 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000001990.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1029:4509... [more]
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BLAST of EMLSAG00000000199 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000199 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000199 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000199 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1029supercontigLSalAtl2s1029:45097..47559 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
NoteHypothetical protein
Descriptionaugustus_masked-LSalAtl2s1029-processed-gene-0.1
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000199 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000199EMLSAT00000000199-696046Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1029:45097..47559-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000199-682965 ID=EMLSAG00000000199-682965|Name=EMLSAG00000000199|organism=Lepeophtheirus salmonis|type=gene|length=2463bp|location=Sequence derived from alignment at LSalAtl2s1029:45097..47559- (Lepeophtheirus salmonis)
ATGTCCCATCCTCCTTATCGAACTAGAAGCGACACACTTAAACTTCAACG
GCTTATACATACATTAAAGGAAAGGGGAAGCAATTTTGCGAATGTTCTAG
AAACAACTGCATCAAATTTTTTAAGTGATGTGAAAAAGGACAAGACGGTC
GTACCATCCATTCCTCACTATGATCCAGGAGATGACTCAGATGGAAGTTC
GTTCGAAGGATACCCAGAGGCAAAAGATGGGGAAGAAGAAGAGTGGGGTT
CAGATTGGGAGGAAGATACAGGGGAAGAAGATAAATGTGCCCTACAAGAT
GCTCAATTTCAGTGCGATATTAATGTGACAAAGGAACCTGCAACCTGTTC
TCGGAATGCTTCCTATGATTATGCCCCTACACATGATTCGAAGAAGAATG
AGACAGAGACTGGTTCAAAACAACTGACTCTAAATTCAAAAAAATTAGAT
TGTGATGACTCAATTTCTTTAAAATTATCTTACACTCAATCCCTCGATAA
AACTATTTCAACTAAAAGCGTTCCATTTAGTAAAAAAATTACAATTCCTG
AAGGAATACAACATAACGATGATTCAAAAAGAGAAATATTATCCATATCC
AAATATCCTTATCGTGTTTCGACAGATCAAAAAAAAATACTGAAAGATAA
CAATCAAGATCCAATCTTTTCTACAAAAACTTCAGAACTATCTTCAGTTT
TAAAGGATTCGCCCGTTTTACCAAGTAAATTCTCAGAAAAAAAGTCCTTA
TTAAGCCCATCAAAAGAATTAAACGTCAAATTGAATGACACTTATCAAGA
ACATAGAGAATCAAATAGTATAAAAGTGATGTCAACAAAAGAACAAAAAT
TATCTATAGAAACGTCAGATATTAATGATGAAGTAGAGCAATTAAATGAA
AGATCTATCGAGGATTTCAAAATCCAAGCAACCTCTAAAGCAATATCAAT
GGATTTATTAGAGAATGACTCATGTAATAATGCACCTTTACAAAAAATAG
ATGAGAATGGAGACGGAATAAGTTGTTGTATCAATAATAGTATACTTGAA
AATGATGAAGATTTTAATGTAACAACTCTCCAAGAGGATAGAGAATTAAG
TAGACAAGATGATGTTATAACGAATTTTCAAAAAAGAATAGAAGAAAGTA
TCGAGACTCCGTGTTACAAAGATTTCAACACAGACTTAATAAAATGTATT
CCTAAAGATAATCATACATCAAATGTAAATAAGGTTGCAAAAAAAACTAT
CGATAAAAAGAAGTCAAAAATAACGTATTCAAAAGAAGTGACCTTATCAT
CATCAGCTCCCGCTACAATTCAAGAAAAACATCAAGAACTTAAAAATACA
AAATGTTTAATAAAAGAGTTAAAAAAGGATAGTTCTTCTTCTCATCAAGA
AATAATGAGAGTTTCTTCTGAAAAACAAATTGGCCCGATCAGAAAGTCAG
CGCAAAATAAATTAACTAACGAAAAAAAGTCATATCCTTGTATGAAGGAA
AGGGAGTGTACAAAAGTTGAAATATCAAAAAATAAATCCTACACGTCATC
AATTAAAAGTAAAGAAGATTTTAAAGAAAGGAAAAAGTCAGTTGATAAGG
AAGAAACAGAATGTATTACCCACATAAAAGAAAAACCCTCTGTATTGTCA
AACACTCGTTTAACAATAAAGTCGGATTTTACGGAGACAAAATGTACTGA
AATGAAAAATAGTTCAGCTGTAACATCTAAAAAAGACTCTTTTTCTCAAA
ATGCAAAACATTTATGTACCCTTTCAAAAAGTGGATGTCTAATAGACCGA
GCAAGTTCATCTGATAGCCACAAAAGCTCCGTAGAACAAAATCATATAGT
CAATAATAACGACATATTATTAAAAAATACGAATTCCAACATTGCCAATG
AAAGTTCTAATAATGAGAACATCAAAAGTCTCGAGGACACAAATATTACA
AATGTTACGAAAGAAGAAAGAGTACAAAATAATATACTAAAACAGAGAAA
ATCAATTGAGCATTCTAGGCAATCTATTGATTTGAAAGAAAATACTGATG
ATAAATTACATGTTGAAATAAATAAAGGTGAATGTACAAAGGTACACATC
CCTGCATCCAAATTGGAAAACAATAATAAGAGTAATGAATCTCCTCCATC
TCCTACTTGTAAGCAAATAAAGCATGTATCTTTCGATATGACTGATAGTA
GTAATTTACCAGAGACGGAGGATTCTGATGTGTTATTACACGAAGAAAAG
TTACAAACAGTTGAGCCCTCACAAGAAATTTCATCAACTCCAGTTGAAGA
GCCATTTTCTTATCAGAATGAAAACAAAAAAGAAGAAAGTAATAATAGTA
TCAGCAACTTGACTCCTAAGAAAAAGAATACAAAACCTGGACGTCGAAGC
CAAACCCTTGCAGCTCTCTGGCGTAAAAACAAAGAGAAGCAACGAAAAAC
TAGTAATATCTAA
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