EMLSAG00000000208, EMLSAG00000000208-682974 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000208
Unique NameEMLSAG00000000208-682974
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000208 vs. GO
Match: - (symbol:IGF2R "Uncharacterized protein" species:9031 "Gallus gallus" [GO:0001948 "glycoprotein binding" evidence=IEA] [GO:0005215 "transporter activity" evidence=IEA] [GO:0005520 "insulin-like growth factor binding" evidence=IEA] [GO:0005537 "mannose binding" evidence=IEA] [GO:0005641 "nuclear envelope lumen" evidence=IEA] [GO:0005768 "endosome" evidence=IEA] [GO:0009986 "cell surface" evidence=IEA] [GO:0016021 "integral component of membrane" evidence=IEA] [GO:0030139 "endocytic vesicle" evidence=IEA] [GO:0030140 "trans-Golgi network transport vesicle" evidence=IEA] [GO:0042802 "identical protein binding" evidence=IEA] [GO:0051219 "phosphoprotein binding" evidence=IEA] InterPro:IPR000479 Pfam:PF00878 GO:GO:0016021 GO:GO:0005737 GO:GO:0005215 InterPro:IPR013806 SUPFAM:SSF57440 InterPro:IPR009011 SUPFAM:SSF50911 Gene3D:2.10.10.10 InterPro:IPR000562 Pfam:PF00040 SMART:SM00059 PROSITE:PS00023 PROSITE:PS51092 OrthoDB:EOG74BJRG TreeFam:TF328963 GeneTree:ENSGT00390000013943 EMBL:AADN03002983 PDB:2L21 PDBsum:2L21 Ensembl:ENSGALT00000018986 PRO:PR:F1NVD2 Uniprot:F1NVD2)

HSP 1 Score: 44.669 bits (104), Expect = 3.294e-5
Identity = 21/46 (45.65%), Postives = 27/46 (58.70%), Query Frame = 0 
Query:   21 SAGQSCS--TTDGRICIFPFKYLGIPYDGCTTIDYGNTAWCATSLD 64
            + G  C   T  G +C+FPFKY G  YD C T +  N  WCAT++D
Sbjct: 1958 TGGDRCPPVTEKGELCVFPFKYKGKSYDKCIT-EEKNRPWCATAVD 2002
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BLAST of EMLSAG00000000208 vs. C. finmarchicus
Match: gi|592771624|gb|GAXK01182944.1| (TSA: Calanus finmarchicus comp288222_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 50.8322 bits (120), Expect = 7.536e-8
Identity = 28/60 (46.67%), Postives = 34/60 (56.67%), Query Frame = 0 
Query:    6 TFYSLPLTLGMQTLLSAGQSCSTTDGRICIFPFKYLGIPYDGCTT-IDYGNTAWCATSLD 64
            T  SL L + +    + GQ CSTTD   C+FPF YLG  YD CT   D     WCAT++D
Sbjct: 1543 TQNSLKLMVTLVIGTNLGQGCSTTDKDRCVFPFIYLGKTYDDCTRDSDPDGKRWCATNVD 1722
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BLAST of EMLSAG00000000208 vs. C. finmarchicus
Match: gi|592771625|gb|GAXK01182943.1| (TSA: Calanus finmarchicus comp288222_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 50.8322 bits (120), Expect = 7.548e-8
Identity = 28/60 (46.67%), Postives = 34/60 (56.67%), Query Frame = 0 
Query:    6 TFYSLPLTLGMQTLLSAGQSCSTTDGRICIFPFKYLGIPYDGCTT-IDYGNTAWCATSLD 64
            T  SL L + +    + GQ CSTTD   C+FPF YLG  YD CT   D     WCAT++D
Sbjct: 1547 TQNSLKLMVTLVIGTNLGQGCSTTDKDRCVFPFIYLGKTYDDCTRDSDPDGKRWCATNVD 1726
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BLAST of EMLSAG00000000208 vs. C. finmarchicus
Match: gi|592771626|gb|GAXK01182942.1| (TSA: Calanus finmarchicus comp288222_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 50.8322 bits (120), Expect = 7.595e-8
Identity = 28/60 (46.67%), Postives = 34/60 (56.67%), Query Frame = 0 
Query:    6 TFYSLPLTLGMQTLLSAGQSCSTTDGRICIFPFKYLGIPYDGCTT-IDYGNTAWCATSLD 64
            T  SL L + +    + GQ CSTTD   C+FPF YLG  YD CT   D     WCAT++D
Sbjct: 1572 TQNSLKLMVTLVIGTNLGQGCSTTDKDRCVFPFIYLGKTYDDCTRDSDPDGKRWCATNVD 1751
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BLAST of EMLSAG00000000208 vs. C. finmarchicus
Match: gi|592868234|gb|GAXK01089328.1| (TSA: Calanus finmarchicus comp891836_c0_seq13 transcribed RNA sequence)

HSP 1 Score: 45.8246 bits (107), Expect = 6.388e-7
Identity = 20/42 (47.62%), Postives = 26/42 (61.90%), Query Frame = 0 
Query:   24 QSCSTTDGRICIFPFKYLGIPYDGCTTIDYGNTA-WCATSLD 64
            Q C T  G+ C+FPFKY G  +  CT  D  N A WCAT+++
Sbjct:   96 QGCQTARGKYCVFPFKYKGKAHSKCTKEDSKNGAYWCATAIE 221
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BLAST of EMLSAG00000000208 vs. C. finmarchicus
Match: gi|592868237|gb|GAXK01089325.1| (TSA: Calanus finmarchicus comp891836_c0_seq10 transcribed RNA sequence)

HSP 1 Score: 46.595 bits (109), Expect = 7.113e-7
Identity = 21/42 (50.00%), Postives = 26/42 (61.90%), Query Frame = 0 
Query:   24 QSCSTTDGRICIFPFKYLGIPYDGCTTIDYGNTA-WCATSLD 64
            Q C T  G+ C+FPFKY G  +  CT  D  N A WCAT++D
Sbjct:  331 QGCQTASGKYCVFPFKYKGKAHSKCTKEDSKNGAYWCATAVD 456

HSP 2 Score: 37.7354 bits (86), Expect = 9.671e-4
Identity = 22/56 (39.29%), Postives = 28/56 (50.00%), Query Frame = 0 
Query:   11 PLTLGMQTLLSAGQSCSTTDGRICIFPFKYLGIPYDGCTTIDYGNTA--WCATSLD 64
            PL + M       + C TT    CIFPFK+ G  Y  CT  DY +    WCAT ++
Sbjct:  133 PLEMDMD------EGCRTTKNEECIFPFKFRGRFYKSCTR-DYSDNGSPWCATQVN 279
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BLAST of EMLSAG00000000208 vs. C. finmarchicus
Match: gi|592853500|gb|GAXK01104044.1| (TSA: Calanus finmarchicus comp271928_c0_seq11 transcribed RNA sequence)

HSP 1 Score: 48.1358 bits (113), Expect = 7.477e-7
Identity = 21/50 (42.00%), Postives = 29/50 (58.00%), Query Frame = 0 
Query:   15 GMQTLLSAGQSCSTTDGRICIFPFKYLGIPYDGCTTIDYGNTAWCATSLD 64
             +Q  +   QSC T +G  C+FPF Y G+ Y  CT++D     WCAT L+
Sbjct: 2033 AVQDTVCEHQSCYTQEGAECVFPFPYKGVTYQNCTSVDV-YLPWCATELN 2179
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BLAST of EMLSAG00000000208 vs. C. finmarchicus
Match: gi|592853501|gb|GAXK01104043.1| (TSA: Calanus finmarchicus comp271928_c0_seq10 transcribed RNA sequence)

HSP 1 Score: 48.1358 bits (113), Expect = 7.507e-7
Identity = 21/50 (42.00%), Postives = 29/50 (58.00%), Query Frame = 0 
Query:   15 GMQTLLSAGQSCSTTDGRICIFPFKYLGIPYDGCTTIDYGNTAWCATSLD 64
             +Q  +   QSC T +G  C+FPF Y G+ Y  CT++D     WCAT L+
Sbjct: 2033 AVQDTVCEHQSCYTQEGAECVFPFPYKGVTYQNCTSVDV-YLPWCATELN 2179
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BLAST of EMLSAG00000000208 vs. C. finmarchicus
Match: gi|592853506|gb|GAXK01104038.1| (TSA: Calanus finmarchicus comp271928_c0_seq5 transcribed RNA sequence)

HSP 1 Score: 48.1358 bits (113), Expect = 7.993e-7
Identity = 21/50 (42.00%), Postives = 29/50 (58.00%), Query Frame = 0 
Query:   15 GMQTLLSAGQSCSTTDGRICIFPFKYLGIPYDGCTTIDYGNTAWCATSLD 64
             +Q  +   QSC T +G  C+FPF Y G+ Y  CT++D     WCAT L+
Sbjct: 2033 AVQDTVCEHQSCYTQEGAECVFPFPYKGVTYQNCTSVDV-YLPWCATELN 2179
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BLAST of EMLSAG00000000208 vs. C. finmarchicus
Match: gi|592853507|gb|GAXK01104037.1| (TSA: Calanus finmarchicus comp271928_c0_seq4 transcribed RNA sequence)

HSP 1 Score: 48.1358 bits (113), Expect = 8.199e-7
Identity = 21/50 (42.00%), Postives = 29/50 (58.00%), Query Frame = 0 
Query:   15 GMQTLLSAGQSCSTTDGRICIFPFKYLGIPYDGCTTIDYGNTAWCATSLD 64
             +Q  +   QSC T +G  C+FPF Y G+ Y  CT++D     WCAT L+
Sbjct: 8414 AVQDTVCEHQSCYTQEGAECVFPFPYKGVTYQNCTSVDV-YLPWCATELN 8560

HSP 2 Score: 38.891 bits (89), Expect = 8.724e-4
Identity = 18/42 (42.86%), Postives = 25/42 (59.52%), Query Frame = 0 
Query:   24 QSCSTTDGRICIFPFKYLGIPYDGCTTID-YGNTAWCATSLD 64
            + C  ++ + CIFPF+  G  YD CTTI    NT WC+  +D
Sbjct: 3335 RECRISEDQACIFPFRVGGRLYDKCTTIGTETNTPWCSLKVD 3460
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BLAST of EMLSAG00000000208 vs. C. finmarchicus
Match: gi|592853508|gb|GAXK01104036.1| (TSA: Calanus finmarchicus comp271928_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 48.1358 bits (113), Expect = 8.203e-7
Identity = 21/50 (42.00%), Postives = 29/50 (58.00%), Query Frame = 0 
Query:   15 GMQTLLSAGQSCSTTDGRICIFPFKYLGIPYDGCTTIDYGNTAWCATSLD 64
             +Q  +   QSC T +G  C+FPF Y G+ Y  CT++D     WCAT L+
Sbjct: 8414 AVQDTVCEHQSCYTQEGAECVFPFPYKGVTYQNCTSVDV-YLPWCATELN 8560

HSP 2 Score: 38.891 bits (89), Expect = 8.728e-4
Identity = 18/42 (42.86%), Postives = 25/42 (59.52%), Query Frame = 0 
Query:   24 QSCSTTDGRICIFPFKYLGIPYDGCTTID-YGNTAWCATSLD 64
            + C  ++ + CIFPF+  G  YD CTTI    NT WC+  +D
Sbjct: 3335 RECRISEDQACIFPFRVGGRLYDKCTTIGTETNTPWCSLKVD 3460
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BLAST of EMLSAG00000000208 vs. L. salmonis peptides
Match: EMLSAP00000009269 (pep:novel supercontig:LSalAtl2s:LSalAtl2s58:709591:716253:-1 gene:EMLSAG00000009269 transcript:EMLSAT00000009269 description:"maker-LSalAtl2s58-augustus-gene-7.4")

HSP 1 Score: 49.2914 bits (116), Expect = 3.016e-9
Identity = 20/38 (52.63%), Postives = 26/38 (68.42%), Query Frame = 0 
Query:   26 CSTTDGRICIFPFKYLGIPYDGCTTIDYGNTAWCATSL 63
            C+ T+G +C FPF YLG+ Y+ CT+ID     WCA SL
Sbjct:   67 CTXTNGEVCKFPFIYLGVTYNECTSIDNAGVFWCALSL 104
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BLAST of EMLSAG00000000208 vs. L. salmonis peptides
Match: EMLSAP00000001176 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1194:65796:74243:-1 gene:EMLSAG00000001176 transcript:EMLSAT00000001176 description:"snap_masked-LSalAtl2s1194-processed-gene-1.11")

HSP 1 Score: 48.1358 bits (113), Expect = 5.320e-9
Identity = 22/40 (55.00%), Postives = 23/40 (57.50%), Query Frame = 0 
Query:   24 QSCSTTDGRICIFPFKYLGIPYDGCTTIDYGNTAWCATSL 63
            Q C T  G  CIFPF Y G+ YD CT  D     WCATSL
Sbjct:   94 QGCKTESGLECIFPFIYAGVTYDDCTDDDNNGIKWCATSL 133

HSP 2 Score: 46.9802 bits (110), Expect = 1.659e-8
Identity = 25/59 (42.37%), Postives = 32/59 (54.24%), Query Frame = 0 
Query:    5 ITFYSLPLTLGMQTLLSAGQSCSTTDGRICIFPFKYLGIPYDGCTTIDYGNTAWCATSL 63
            I  Y    ++G  T +S  + C T+    CIFPF YLGI Y+ CT +      WCATSL
Sbjct:    4 IIEYISDESVGTGTTISINK-CQTSQDIDCIFPFIYLGISYNSCTDVQNNGVKWCATSL 61
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BLAST of EMLSAG00000000208 vs. L. salmonis peptides
Match: EMLSAP00000000209 (pep:novel supercontig:LSalAtl2s:LSalAtl2s102:309071:333337:1 gene:EMLSAG00000000209 transcript:EMLSAT00000000209 description:"maker-LSalAtl2s102-augustus-gene-3.9")

HSP 1 Score: 49.6766 bits (117), Expect = 7.786e-9
Identity = 20/39 (51.28%), Postives = 25/39 (64.10%), Query Frame = 0 
Query:   26 CSTTDGRICIFPFKYLGIPYDGCTTIDYGNTAWCATSLD 64
            C +T G  C FPF Y G  YD CT +D+GN  WCA S++
Sbjct:   38 CKSTSGATCKFPFGYKGEMYDQCTNVDFGNAFWCAVSVN 76
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BLAST of EMLSAG00000000208 vs. L. salmonis peptides
Match: EMLSAP00000006369 (pep:novel supercontig:LSalAtl2s:LSalAtl2s348:56470:57649:-1 gene:EMLSAG00000006369 transcript:EMLSAT00000006369 description:"maker-LSalAtl2s348-snap-gene-1.9")

HSP 1 Score: 47.3654 bits (111), Expect = 8.649e-9
Identity = 25/60 (41.67%), Postives = 33/60 (55.00%), Query Frame = 0 
Query:    4 TITFYSLPLTLGMQTLLSAGQSCSTTDGRICIFPFKYLGIPYDGCTTIDYGNTAWCATSL 63
            ++  +S+ LT+      S GQ C T +   C+FPF Y    Y GCTT + G   WCATSL
Sbjct:    3 SLKVFSIFLTITTLLSQSNGQDCLTNNNATCVFPFIYGERIYAGCTTANNGGIFWCATSL 62
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BLAST of EMLSAG00000000208 vs. L. salmonis peptides
Match: EMLSAP00000007469 (pep:novel supercontig:LSalAtl2s:LSalAtl2s427:478231:479427:-1 gene:EMLSAG00000007469 transcript:EMLSAT00000007469 description:"maker-LSalAtl2s427-snap-gene-3.19")

HSP 1 Score: 46.9802 bits (110), Expect = 1.535e-8
Identity = 18/36 (50.00%), Postives = 25/36 (69.44%), Query Frame = 0 
Query:   26 CSTTDGRICIFPFKYLGIPYDGCTTIDYGNTAWCAT 61
            C  ++GR C+FPF Y G+ Y+ CT  D+G+  WCAT
Sbjct:   40 CPASNGRNCVFPFIYKGVTYEKCTVTDFGSIFWCAT 75

HSP 2 Score: 44.2838 bits (103), Expect = 1.066e-7
Identity = 19/47 (40.43%), Postives = 27/47 (57.45%), Query Frame = 0 
Query:   18 TLLSAGQSCSTTDGRICIFPFKYLGIPYDGCTTIDYGNTAWCATSLD 64
            ++      C+TT  + C FPF Y G+ +  CTT D   + WCATS+D
Sbjct:   69 SIFWCATECATTSNQACSFPFIYNGVTFQSCTTRDNSGSPWCATSVD 115
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000208 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 1
Match NameE-valueIdentityDescription
-3.294e-545.65symbol:IGF2R "Uncharacterized protein" species:903... [more]
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BLAST of EMLSAG00000000208 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 25
Match NameE-valueIdentityDescription
gi|592771624|gb|GAXK01182944.1|7.536e-846.67TSA: Calanus finmarchicus comp288222_c0_seq3 trans... [more]
gi|592771625|gb|GAXK01182943.1|7.548e-846.67TSA: Calanus finmarchicus comp288222_c0_seq2 trans... [more]
gi|592771626|gb|GAXK01182942.1|7.595e-846.67TSA: Calanus finmarchicus comp288222_c0_seq1 trans... [more]
gi|592868234|gb|GAXK01089328.1|6.388e-747.62TSA: Calanus finmarchicus comp891836_c0_seq13 tran... [more]
gi|592868237|gb|GAXK01089325.1|7.113e-750.00TSA: Calanus finmarchicus comp891836_c0_seq10 tran... [more]
gi|592853500|gb|GAXK01104044.1|7.477e-742.00TSA: Calanus finmarchicus comp271928_c0_seq11 tran... [more]
gi|592853501|gb|GAXK01104043.1|7.507e-742.00TSA: Calanus finmarchicus comp271928_c0_seq10 tran... [more]
gi|592853506|gb|GAXK01104038.1|7.993e-742.00TSA: Calanus finmarchicus comp271928_c0_seq5 trans... [more]
gi|592853507|gb|GAXK01104037.1|8.199e-742.00TSA: Calanus finmarchicus comp271928_c0_seq4 trans... [more]
gi|592853508|gb|GAXK01104036.1|8.203e-742.00TSA: Calanus finmarchicus comp271928_c0_seq3 trans... [more]

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BLAST of EMLSAG00000000208 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 25
Match NameE-valueIdentityDescription
EMLSAP000000092693.016e-952.63pep:novel supercontig:LSalAtl2s:LSalAtl2s58:709591... [more]
EMLSAP000000011765.320e-955.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1194:6579... [more]
EMLSAP000000002097.786e-951.28pep:novel supercontig:LSalAtl2s:LSalAtl2s102:30907... [more]
EMLSAP000000063698.649e-941.67pep:novel supercontig:LSalAtl2s:LSalAtl2s348:56470... [more]
EMLSAP000000074691.535e-850.00pep:novel supercontig:LSalAtl2s:LSalAtl2s427:47823... [more]

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BLAST of EMLSAG00000000208 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000208 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000208 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000208 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s102supercontigLSalAtl2s102:308799..309048 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s102-snap-gene-3.14
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000208 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000208EMLSAT00000000208-696055Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s102:308799..309048+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000208-682974 ID=EMLSAG00000000208-682974|Name=EMLSAG00000000208|organism=Lepeophtheirus salmonis|type=gene|length=250bp|location=Sequence derived from alignment at LSalAtl2s102:308799..309048+ (Lepeophtheirus salmonis)
ATGGAGAAAACTATCACGTTTTACTCTTTGCCCTTGACTCTTGGCATGCA
GACTCTTTTATCAGCAGGTAAAAGTTCGAAAGTATCTCATAGCTTTAAAA
TTTACTCATAATTATTTTGTAGGTCAATCATGTTCTACCACTGATGGACG
GATCTGCATATTTCCATTCAAATATCTTGGTATACCATATGATGGGTGTA
CAACTATCGATTATGGAAATACGGCATGGTGCGCTACATCCTTAGACTGA
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