EMLSAG00000000213, EMLSAG00000000213-682979 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000213
Unique NameEMLSAG00000000213-682979
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000000213 vs. GO
Match: - (symbol:RPL27 "60S ribosomal protein L27" species:9823 "Sus scrofa" [GO:0003735 "structural constituent of ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA] InterPro:IPR001141 InterPro:IPR018262 Pfam:PF01777 ProDom:PD009396 PROSITE:PS01107 Pfam:PF00467 GO:GO:0006412 GO:GO:0003735 Gene3D:2.30.30.30 InterPro:IPR014722 InterPro:IPR008991 SUPFAM:SSF50104 GO:GO:0022625 InterPro:IPR005824 SMART:SM00739 PANTHER:PTHR10497 OMA:KIYKPGK GeneTree:ENSGT00390000010721 OrthoDB:EOG7J181Z TreeFam:TF314648 EMBL:FP340289 Ensembl:ENSSSCT00000026116 ArrayExpress:I3LIX1 Uniprot:I3LIX1)

HSP 1 Score: 45.8246 bits (107), Expect = 1.765e-6
Identity = 27/57 (47.37%), Postives = 31/57 (54.39%), Query Frame = 0 
Query:    8 MSHGGDFYPRKVGET--------RSKCMSFHKVLNYNNLMHTCYNVDIEFDKESIGK 56
            +  G D YPRKV           RSK  SF KV NYN+LM T Y+VDI  DK  + K
Sbjct:   41 LVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNK 97
[Close]
BLAST of EMLSAG00000000213 vs. GO
Match: - (symbol:RPL27 "Uncharacterized protein" species:9615 "Canis lupus familiaris" [GO:0003735 "structural constituent of ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA] InterPro:IPR001141 Pfam:PF01777 ProDom:PD009396 GO:GO:0006412 GO:GO:0003735 Gene3D:2.30.30.30 InterPro:IPR014722 InterPro:IPR008991 SUPFAM:SSF50104 GO:GO:0022625 OMA:RVKCFFK PANTHER:PTHR10497 GeneTree:ENSGT00390000010721 OrthoDB:EOG7J181Z TreeFam:TF314648 Ensembl:ENSCAFT00000020952 Uniprot:E2QVG7)

HSP 1 Score: 45.4394 bits (106), Expect = 2.175e-6
Identity = 27/57 (47.37%), Postives = 31/57 (54.39%), Query Frame = 0 
Query:    8 MSHGGDFYPRKVGET--------RSKCMSFHKVLNYNNLMHTCYNVDIEFDKESIGK 56
            +  G D YPRKV           RSK  SF KV NYN+LM T Y+VDI  DK  + K
Sbjct:   40 LVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNK 96
[Close]
BLAST of EMLSAG00000000213 vs. GO
Match: - (symbol:RGD1563835 "similar to ribosomal protein L27" species:10116 "Rattus norvegicus" [GO:0003735 "structural constituent of ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA] InterPro:IPR001141 InterPro:IPR018262 Pfam:PF01777 ProDom:PD009396 PROSITE:PS01107 RGD:1563835 Pfam:PF00467 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 Gene3D:2.30.30.30 InterPro:IPR014722 InterPro:IPR008991 SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739 PANTHER:PTHR10497 GeneTree:ENSGT00390000010721 OrthoDB:EOG7J181Z TreeFam:TF314648 EMBL:AABR06068771 RefSeq:XP_001069148.1 RefSeq:XP_573288.1 PRIDE:D3ZTK5 Ensembl:ENSRNOT00000042756 GeneID:498085 KEGG:rno:498085 UCSC:RGD:1563835 CTD:498085 OMA:KITACKE NextBio:698627 Uniprot:D3ZTK5)

HSP 1 Score: 43.8986 bits (102), Expect = 8.845e-6
Identity = 26/56 (46.43%), Postives = 31/56 (55.36%), Query Frame = 0 
Query:    8 MSHGGDFYPRKVGET-------RSKCMSFHKVLNYNNLMHTCYNVDIEFDKESIGK 56
            +  G D YPRKV          RSK  SF KV NY++LM T Y+VDI  DK  + K
Sbjct:   42 LVAGIDCYPRKVTAAMGKKMAKRSKIKSFVKVYNYSHLMPTRYSVDIPLDKTVVNK 97
[Close]
BLAST of EMLSAG00000000213 vs. GO
Match: - (symbol:Rpl27-l1 "60S ribosomal protein L27" species:10116 "Rattus norvegicus" [GO:0003735 "structural constituent of ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA] InterPro:IPR001141 InterPro:IPR018262 Pfam:PF01777 ProDom:PD009396 PROSITE:PS01107 RGD:1585224 Pfam:PF00467 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 Gene3D:2.30.30.30 InterPro:IPR014722 InterPro:IPR008991 SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739 PANTHER:PTHR10497 GeneTree:ENSGT00390000010721 OMA:HKRMGKG OrthoDB:EOG7J181Z TreeFam:TF314648 EMBL:AABR06105299 RefSeq:XP_001068279.1 RefSeq:XP_002727618.1 PRIDE:D4AD41 Ensembl:ENSRNOT00000047308 GeneID:688784 KEGG:rno:688784 CTD:688784 NextBio:737238 Uniprot:D4AD41)

HSP 1 Score: 42.743 bits (99), Expect = 2.190e-5
Identity = 25/57 (43.86%), Postives = 31/57 (54.39%), Query Frame = 0 
Query:    8 MSHGGDFYPRKVGET--------RSKCMSFHKVLNYNNLMHTCYNVDIEFDKESIGK 56
            +  G D YPRKV           RSK  SF K+ NYN+L+ T Y+VDI  DK  + K
Sbjct:   42 LVAGIDHYPRKVTAAMGKKKIAKRSKIKSFVKLYNYNHLVPTRYSVDIPLDKTVVNK 98
[Close]
BLAST of EMLSAG00000000213 vs. GO
Match: - (symbol:Rpl27-l1 "ribosomal protein L27-like 1" species:10116 "Rattus norvegicus" [GO:0003735 "structural constituent of ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA] InterPro:IPR001141 InterPro:IPR018262 Pfam:PF01777 ProDom:PD009396 PROSITE:PS01107 RGD:1585224 Pfam:PF00467 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 Gene3D:2.30.30.30 InterPro:IPR014722 InterPro:IPR008991 SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739 PANTHER:PTHR10497 GeneTree:ENSGT00390000010721 OMA:HKRMGKG OrthoDB:EOG7J181Z TreeFam:TF314648 EMBL:AABR06105299 RefSeq:XP_001068279.1 RefSeq:XP_002727618.1 PRIDE:D4AD41 Ensembl:ENSRNOT00000047308 GeneID:688784 KEGG:rno:688784 CTD:688784 NextBio:737238 Uniprot:D4AD41)

HSP 1 Score: 42.743 bits (99), Expect = 2.190e-5
Identity = 25/57 (43.86%), Postives = 31/57 (54.39%), Query Frame = 0 
Query:    8 MSHGGDFYPRKVGET--------RSKCMSFHKVLNYNNLMHTCYNVDIEFDKESIGK 56
            +  G D YPRKV           RSK  SF K+ NYN+L+ T Y+VDI  DK  + K
Sbjct:   42 LVAGIDHYPRKVTAAMGKKKIAKRSKIKSFVKLYNYNHLVPTRYSVDIPLDKTVVNK 98
[Close]
BLAST of EMLSAG00000000213 vs. GO
Match: - (symbol:rpl-27 species:6239 "Caenorhabditis elegans" [GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP] [GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0018996 "molting cycle, collagen and cuticulin-based cuticle" evidence=IMP] InterPro:IPR001141 InterPro:IPR018262 Pfam:PF01777 ProDom:PD009396 PROSITE:PS01107 Pfam:PF00467 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 Gene3D:2.30.30.30 InterPro:IPR014722 InterPro:IPR008991 SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739 eggNOG:COG2163 HOGENOM:HOG000210138 KO:K02901 PANTHER:PTHR10497 OMA:KIYKPGK GeneTree:ENSGT00390000010721 EMBL:U89308 EMBL:FO080940 RefSeq:NP_490905.1 UniGene:Cel.19696 ProteinModelPortal:P91914 SMR:P91914 STRING:6239.C53H9.1.2 PaxDb:P91914 EnsemblMetazoa:C53H9.1.1 EnsemblMetazoa:C53H9.1.2 GeneID:171750 KEGG:cel:CELE_C53H9.1 UCSC:C53H9.1.1 CTD:171750 WormBase:C53H9.1 InParanoid:P91914 NextBio:872543 PRO:PR:P91914 Uniprot:P91914)

HSP 1 Score: 42.743 bits (99), Expect = 2.326e-5
Identity = 24/61 (39.34%), Postives = 34/61 (55.74%), Query Frame = 0 
Query:    4 HPQHMSHGGDFYPRKVG--------ETRSKCMSFHKVLNYNNLMHTCYNVDIEFDKESIGK 56
            +P  +  G D YP KV         E R+K   F KV++Y +L+ T Y+VD+ FDK +I K
Sbjct:   38 YPHAIIAGIDRYPLKVTKDMGKKKIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINK 98
[Close]
BLAST of EMLSAG00000000213 vs. GO
Match: - (symbol:rpl-27 "60S ribosomal protein L27" species:6239 "Caenorhabditis elegans" [GO:0003735 "structural constituent of ribosome" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA] InterPro:IPR001141 InterPro:IPR018262 Pfam:PF01777 ProDom:PD009396 PROSITE:PS01107 Pfam:PF00467 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 Gene3D:2.30.30.30 InterPro:IPR014722 InterPro:IPR008991 SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739 eggNOG:COG2163 HOGENOM:HOG000210138 KO:K02901 PANTHER:PTHR10497 OMA:KIYKPGK GeneTree:ENSGT00390000010721 EMBL:U89308 EMBL:FO080940 RefSeq:NP_490905.1 UniGene:Cel.19696 ProteinModelPortal:P91914 SMR:P91914 STRING:6239.C53H9.1.2 PaxDb:P91914 EnsemblMetazoa:C53H9.1.1 EnsemblMetazoa:C53H9.1.2 GeneID:171750 KEGG:cel:CELE_C53H9.1 UCSC:C53H9.1.1 CTD:171750 WormBase:C53H9.1 InParanoid:P91914 NextBio:872543 PRO:PR:P91914 Uniprot:P91914)

HSP 1 Score: 42.743 bits (99), Expect = 2.326e-5
Identity = 24/61 (39.34%), Postives = 34/61 (55.74%), Query Frame = 0 
Query:    4 HPQHMSHGGDFYPRKVG--------ETRSKCMSFHKVLNYNNLMHTCYNVDIEFDKESIGK 56
            +P  +  G D YP KV         E R+K   F KV++Y +L+ T Y+VD+ FDK +I K
Sbjct:   38 YPHAIIAGIDRYPLKVTKDMGKKKIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINK 98
[Close]
BLAST of EMLSAG00000000213 vs. GO
Match: - (symbol:LOC100912027 "Protein LOC100912027" species:10116 "Rattus norvegicus" [GO:0003735 "structural constituent of ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA] InterPro:IPR001141 Pfam:PF01777 ProDom:PD009396 RGD:6489473 Pfam:PF00467 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 Gene3D:2.30.30.30 InterPro:IPR014722 InterPro:IPR008991 SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739 PANTHER:PTHR10497 GeneTree:ENSGT00390000010721 OrthoDB:EOG7J181Z OMA:QVAKRAH EMBL:AABR06055452 EMBL:AABR06055447 RefSeq:XP_003750581.1 RefSeq:XP_003754482.1 RefSeq:XP_213135.1 Ensembl:ENSRNOT00000071909 Ensembl:ENSRNOT00000073647 GeneID:100912027 GeneID:300833 KEGG:rno:100912027 KEGG:rno:300833 CTD:300833 Uniprot:M0R7P0)

HSP 1 Score: 41.9726 bits (97), Expect = 4.257e-5
Identity = 25/57 (43.86%), Postives = 30/57 (52.63%), Query Frame = 0 
Query:    8 MSHGGDFYPRKVGET--------RSKCMSFHKVLNYNNLMHTCYNVDIEFDKESIGK 56
            +  G D YPRKV           +SK  SF KV NYN+ M T Y+VDI  DK  + K
Sbjct:   42 LVAGIDRYPRKVTAAMGKKKITKQSKIKSFVKVYNYNHFMPTRYSVDIPLDKTVVNK 98
[Close]
BLAST of EMLSAG00000000213 vs. GO
Match: - (symbol:LOC100912027 "60S ribosomal protein L27-like" species:10116 "Rattus norvegicus" [GO:0003735 "structural constituent of ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA] InterPro:IPR001141 Pfam:PF01777 ProDom:PD009396 RGD:6489473 Pfam:PF00467 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 Gene3D:2.30.30.30 InterPro:IPR014722 InterPro:IPR008991 SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739 PANTHER:PTHR10497 GeneTree:ENSGT00390000010721 OrthoDB:EOG7J181Z OMA:QVAKRAH EMBL:AABR06055452 EMBL:AABR06055447 RefSeq:XP_003750581.1 RefSeq:XP_003754482.1 RefSeq:XP_213135.1 Ensembl:ENSRNOT00000071909 Ensembl:ENSRNOT00000073647 GeneID:100912027 GeneID:300833 KEGG:rno:100912027 KEGG:rno:300833 CTD:300833 Uniprot:M0R7P0)

HSP 1 Score: 41.9726 bits (97), Expect = 4.257e-5
Identity = 25/57 (43.86%), Postives = 30/57 (52.63%), Query Frame = 0 
Query:    8 MSHGGDFYPRKVGET--------RSKCMSFHKVLNYNNLMHTCYNVDIEFDKESIGK 56
            +  G D YPRKV           +SK  SF KV NYN+ M T Y+VDI  DK  + K
Sbjct:   42 LVAGIDRYPRKVTAAMGKKKITKQSKIKSFVKVYNYNHFMPTRYSVDIPLDKTVVNK 98
[Close]
BLAST of EMLSAG00000000213 vs. GO
Match: - (symbol:RPL27 "60S ribosomal protein L27" species:9606 "Homo sapiens" [GO:0003735 "structural constituent of ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA] InterPro:IPR001141 InterPro:IPR018262 Pfam:PF01777 ProDom:PD009396 PROSITE:PS01107 GO:GO:0006412 EMBL:CH471152 EMBL:AC055866 GO:GO:0005840 GO:GO:0003735 Gene3D:2.30.30.30 InterPro:IPR014722 InterPro:IPR008991 SUPFAM:SSF50104 PANTHER:PTHR10497 UniGene:Hs.514196 UniGene:Hs.660076 HGNC:HGNC:10328 ProteinModelPortal:K7EQQ9 SMR:K7EQQ9 PRIDE:K7EQQ9 Ensembl:ENST00000590864 ArrayExpress:K7EQQ9 Uniprot:K7EQQ9)

HSP 1 Score: 40.0466 bits (92), Expect = 1.563e-4
Identity = 20/34 (58.82%), Postives = 23/34 (67.65%), Query Frame = 0 
Query:   23 RSKCMSFHKVLNYNNLMHTCYNVDIEFDKESIGK 56
            RSK  SF KV NYN+LM T Y+VDI  DK  + K
Sbjct:    9 RSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNK 42
[Close]
BLAST of EMLSAG00000000213 vs. C. finmarchicus
Match: gi|592788505|gb|GAXK01166063.1| (TSA: Calanus finmarchicus comp166_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 43.1282 bits (100), Expect = 6.470e-6
Identity = 27/57 (47.37%), Postives = 34/57 (59.65%), Query Frame = 0 
Query:    8 MSHGGDFYPRKVGET--------RSKCMSFHKVLNYNNLMHTCYNVDIEFDKESIGK 56
            +  G D YPRKV +         RSK   F KV+NYN++M T Y+VDI FDK +I K
Sbjct:  152 LVAGIDRYPRKVTKKMSKKKIQKRSKVKPFLKVVNYNHVMPTRYSVDISFDKTNINK 322
[Close]
BLAST of EMLSAG00000000213 vs. C. finmarchicus
Match: gi|592788506|gb|GAXK01166062.1| (TSA: Calanus finmarchicus comp166_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 43.1282 bits (100), Expect = 7.521e-6
Identity = 27/57 (47.37%), Postives = 34/57 (59.65%), Query Frame = 0 
Query:    8 MSHGGDFYPRKVGET--------RSKCMSFHKVLNYNNLMHTCYNVDIEFDKESIGK 56
            +  G D YPRKV +         RSK   F KV+NYN++M T Y+VDI FDK +I K
Sbjct:  152 LVAGIDRYPRKVTKKMSKKKIQKRSKVKPFLKVVNYNHVMPTRYSVDISFDKTNINK 322
[Close]
BLAST of EMLSAG00000000213 vs. C. finmarchicus
Match: gi|592781273|gb|GAXK01173295.1| (TSA: Calanus finmarchicus comp2383511_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 38.891 bits (89), Expect = 3.228e-4
Identity = 26/74 (35.14%), Postives = 32/74 (43.24%), Query Frame = 0 
Query:    3 KHPQHMSHGGDFYPRKVGET--------RSKCMSFHKVLNYNNLMHTCYNVDIEFDKESIGKGPQKPNIETESQ 68
            K    +  G D YPRKV           RSK   F K +NYN++M T Y VDI+  K         P    ES+
Sbjct:  137 KFSHAIVAGIDRYPRKVTRAMGKNTIKKRSKVKPFVKFVNYNHIMPTRYVVDIDLKKVLDDDAMNNPETRVESR 358
[Close]
BLAST of EMLSAG00000000213 vs. C. finmarchicus
Match: gi|592946265|gb|GAXK01012288.1| (TSA: Calanus finmarchicus comp3876908_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 36.5798 bits (83), Expect = 2.163e-3
Identity = 22/54 (40.74%), Postives = 31/54 (57.41%), Query Frame = 0 
Query:    1 MVKHPQHMSHGGDFYPRKVGETRSKCMSFHKVLNYNNLMHTCYNVDIEFDKESI 54
            + K P  +  G     +KV E RS+   F KVLN+N+LM T Y+V+I+F    I
Sbjct:  164 VAKAPLKVKKG--MSAKKV-EKRSRIKPFLKVLNFNHLMPTRYSVEIDFKPAGI 316
[Close]
BLAST of EMLSAG00000000213 vs. C. finmarchicus
Match: gi|592769344|gb|GAXK01185224.1| (TSA: Calanus finmarchicus comp3942177_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 33.4982 bits (75), Expect = 2.169e-2
Identity = 19/46 (41.30%), Postives = 25/46 (54.35%), Query Frame = 0 
Query:   17 RKVGETRSKCMSFHKVLNYNNLMHTCYNVDIEFDKESIGKGPQKPN 62
            RK  E RS+   F K +NYN++M T Y+VDI+       K    PN
Sbjct:  199 RKKIEKRSRIKPFIKFVNYNHIMPTRYSVDIDVKSVVNSKVMANPN 336
[Close]
BLAST of EMLSAG00000000213 vs. C. finmarchicus
Match: gi|592818579|gb|GAXK01135989.1| (TSA: Calanus finmarchicus comp2851050_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 33.4982 bits (75), Expect = 3.449e-2
Identity = 20/45 (44.44%), Postives = 23/45 (51.11%), Query Frame = 0 
Query:   11 GGDFYPRKVGET--------RSKCMSFHKVLNYNNLMHTCYNVDI 47
            G D YPRKV  +        RSK   F K  N+ +LM T Y VDI
Sbjct:  253 GIDRYPRKVTRSMGKKKTAKRSKIKPFVKAFNFTHLMPTRYQVDI 387
[Close]
BLAST of EMLSAG00000000213 vs. C. finmarchicus
Match: gi|592815948|gb|GAXK01138620.1| (TSA: Calanus finmarchicus comp7628178_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 1.664e+0
Identity = 18/55 (32.73%), Postives = 25/55 (45.45%), Query Frame = 0 
Query:    5 PQHMSHGGDFYPRKVGET--------RSKCMSFHKVLNYNNLMHTCYNVDIEFDK 51
            P  +  G D  P KV ++        RSK   F K  N+N++M T Y  D +  K
Sbjct:  149 PHCLVAGIDKAPLKVTKSMSKKKILKRSKIKPFLKYFNFNHIMPTRYAADFDLKK 313
[Close]
BLAST of EMLSAG00000000213 vs. C. finmarchicus
Match: gi|592815947|gb|GAXK01138621.1| (TSA: Calanus finmarchicus comp7628178_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 7.450e+0
Identity = 12/29 (41.38%), Postives = 16/29 (55.17%), Query Frame = 0 
Query:   23 RSKCMSFHKVLNYNNLMHTCYNVDIEFDK 51
            RSK   F K  N+N++M T Y  D +  K
Sbjct:  191 RSKIKPFLKYFNFNHIMPTRYAADFDLKK 277
[Close]
BLAST of EMLSAG00000000213 vs. L. salmonis peptides
Match: EMLSAP00000000213 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1030:53525:53767:-1 gene:EMLSAG00000000213 transcript:EMLSAT00000000213 description:"maker-LSalAtl2s1030-snap-gene-0.1")

HSP 1 Score: 160.614 bits (405), Expect = 1.219e-52
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0 
Query:    1 MVKHPQHMSHGGDFYPRKVGETRSKCMSFHKVLNYNNLMHTCYNVDIEFDKESIGKGPQKPNIETESQTIRHYRL 75
            MVKHPQHMSHGGDFYPRKVGETRSKCMSFHKVLNYNNLMHTCYNVDIEFDKESIGKGPQKPNIETESQTIRHYRL
Sbjct:    1 MVKHPQHMSHGGDFYPRKVGETRSKCMSFHKVLNYNNLMHTCYNVDIEFDKESIGKGPQKPNIETESQTIRHYRL 75
[Close]
BLAST of EMLSAG00000000213 vs. L. salmonis peptides
Match: EMLSAP00000005005 (pep:novel supercontig:LSalAtl2s:LSalAtl2s260:403367:403765:1 gene:EMLSAG00000005005 transcript:EMLSAT00000005005 description:"augustus_masked-LSalAtl2s260-processed-gene-4.5")

HSP 1 Score: 56.6102 bits (135), Expect = 7.580e-12
Identity = 32/57 (56.14%), Postives = 36/57 (63.16%), Query Frame = 0 
Query:    8 MSHGGDFYPRKVGE--------TRSKCMSFHKVLNYNNLMHTCYNVDIEFDKESIGK 56
            +  G D YPRKV +         RSK   F KVLNYN+LM T YNVDI+FDKESI K
Sbjct:   38 LVAGVDRYPRKVTKRMSKKKVKQRSKIKPFLKVLNYNHLMPTRYNVDIKFDKESINK 94
[Close]
BLAST of EMLSAG00000000213 vs. SwissProt
Match: gi|47117189|sp|Q7ZV82.3|RL27_DANRE (RecName: Full=60S ribosomal protein L27)

HSP 1 Score: 47.7506 bits (112), Expect = 2.313e-7
Identity = 27/57 (47.37%), Postives = 32/57 (56.14%), Query Frame = 0 
Query:    8 MSHGGDFYPRKVGET--------RSKCMSFHKVLNYNNLMHTCYNVDIEFDKESIGK 56
            +  G D YPRKV  T        RSK  +F KV NYN+LM T Y+VDI  DK  + K
Sbjct:   42 LVAGIDRYPRKVTATMGKKKIAKRSKIKAFVKVFNYNHLMPTRYSVDIPLDKTVVNK 98
[Close]
BLAST of EMLSAG00000000213 vs. SwissProt
Match: gi|47117269|sp|Q90YU1.3|RL27_ICTPU (RecName: Full=60S ribosomal protein L27)

HSP 1 Score: 47.3654 bits (111), Expect = 3.048e-7
Identity = 27/57 (47.37%), Postives = 32/57 (56.14%), Query Frame = 0 
Query:    8 MSHGGDFYPRKVGET--------RSKCMSFHKVLNYNNLMHTCYNVDIEFDKESIGK 56
            +  G D YPRKV  T        RSK  +F KV NYN+LM T Y+VDI  DK  + K
Sbjct:   42 LVSGIDRYPRKVTATMGKKKVAKRSKIKAFVKVFNYNHLMPTRYSVDIPLDKTIVNK 98
[Close]
BLAST of EMLSAG00000000213 vs. Select Arthropod Genomes
Match: gb|KFM83405.1| (60S ribosomal protein L27, partial [Stegodyphus mimosarum])

HSP 1 Score: 47.7506 bits (112), Expect = 9.356e-8
Identity = 28/57 (49.12%), Postives = 32/57 (56.14%), Query Frame = 0 
Query:    8 MSHGGDFYPRKVGE--------TRSKCMSFHKVLNYNNLMHTCYNVDIEFDKESIGK 56
            +  G D YPRKV           RSK   F KVLNYN+LM T Y VDI+FDK  + K
Sbjct:   42 LIAGIDRYPRKVTRRMGKKKIAKRSKIKPFVKVLNYNHLMPTRYMVDIQFDKSIVNK 98
[Close]
BLAST of EMLSAG00000000213 vs. Select Arthropod Genomes
Match: EFX78542.1 (hypothetical protein DAPPUDRAFT_231081 [Daphnia pulex])

HSP 1 Score: 45.0542 bits (105), Expect = 9.551e-7
Identity = 24/57 (42.11%), Postives = 33/57 (57.89%), Query Frame = 0 
Query:    8 MSHGGDFYPRKVG--------ETRSKCMSFHKVLNYNNLMHTCYNVDIEFDKESIGK 56
            +  G D YPRKV           RSK  +F K++NYN++M T Y+VD+ FDK  + K
Sbjct:   42 LVAGVDRYPRKVTNKMSKKKVAKRSKIKAFVKIVNYNHMMPTRYSVDLSFDKNLVNK 98
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BLAST of EMLSAG00000000213 vs. nr
Match: gi|225714122|gb|ACO12907.1| (60S ribosomal protein L27 [Lepeophtheirus salmonis] >gi|290561357|gb|ADD38079.1| 60S ribosomal protein L27 [Lepeophtheirus salmonis])

HSP 1 Score: 56.6102 bits (135), Expect = 2.103e-8
Identity = 32/57 (56.14%), Postives = 36/57 (63.16%), Query Frame = 0 
Query:    8 MSHGGDFYPRKVGE--------TRSKCMSFHKVLNYNNLMHTCYNVDIEFDKESIGK 56
            +  G D YPRKV +         RSK   F KVLNYN+LM T YNVDI+FDKESI K
Sbjct:   42 LVAGVDRYPRKVTKRMSKKKVKQRSKIKPFLKVLNYNHLMPTRYNVDIKFDKESINK 98
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BLAST of EMLSAG00000000213 vs. nr
Match: gi|290462955|gb|ADD24525.1| (60S ribosomal protein L27 [Lepeophtheirus salmonis])

HSP 1 Score: 56.225 bits (134), Expect = 2.213e-8
Identity = 32/57 (56.14%), Postives = 36/57 (63.16%), Query Frame = 0 
Query:    8 MSHGGDFYPRKVGE--------TRSKCMSFHKVLNYNNLMHTCYNVDIEFDKESIGK 56
            +  G D YPRKV +         RSK   F KVLNYN+LM T YNVDI+FDKESI K
Sbjct:   38 LVAGVDRYPRKVTKRMSKKKVKQRSKIKPFLKVLNYNHLMPTRYNVDIKFDKESINK 94
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BLAST of EMLSAG00000000213 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold1323_size47899-snap-gene-0.17 (protein:Tk03421 transcript:maker-scaffold1323_size47899-snap-gene-0.17-mRNA-1 annotation:"60s ribosomal protein l27")

HSP 1 Score: 43.5134 bits (101), Expect = 3.398e-7
Identity = 25/54 (46.30%), Postives = 32/54 (59.26%), Query Frame = 0 
Query:   11 GGDFYPRKVGE--------TRSKCMSFHKVLNYNNLMHTCYNVDIEFDKESIGK 56
            G D YPR V +         RSK   F KV+NYN++M T Y+VDI FDK ++ K
Sbjct:   45 GIDRYPRIVTKRMSKKKIKMRSKIKPFLKVVNYNHMMPTRYSVDIGFDKANLNK 98
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000213 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 20
Match NameE-valueIdentityDescription
-1.765e-647.37symbol:RPL27 "60S ribosomal protein L27" species:9... [more]
-2.175e-647.37symbol:RPL27 "Uncharacterized protein" species:961... [more]
-8.845e-646.43symbol:RGD1563835 "similar to ribosomal protein L2... [more]
-2.190e-543.86symbol:Rpl27-l1 "60S ribosomal protein L27" specie... [more]
-2.190e-543.86symbol:Rpl27-l1 "ribosomal protein L27-like 1" spe... [more]
-2.326e-539.34symbol:rpl-27 species:6239 "Caenorhabditis elegans... [more]
-2.326e-539.34symbol:rpl-27 "60S ribosomal protein L27" species:... [more]
-4.257e-543.86symbol:LOC100912027 "Protein LOC100912027" species... [more]
-4.257e-543.86symbol:LOC100912027 "60S ribosomal protein L27-lik... [more]
-1.563e-458.82symbol:RPL27 "60S ribosomal protein L27" species:9... [more]

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BLAST of EMLSAG00000000213 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 8
Match NameE-valueIdentityDescription
gi|592788505|gb|GAXK01166063.1|6.470e-647.37TSA: Calanus finmarchicus comp166_c0_seq2 transcri... [more]
gi|592788506|gb|GAXK01166062.1|7.521e-647.37TSA: Calanus finmarchicus comp166_c0_seq1 transcri... [more]
gi|592781273|gb|GAXK01173295.1|3.228e-435.14TSA: Calanus finmarchicus comp2383511_c0_seq1 tran... [more]
gi|592946265|gb|GAXK01012288.1|2.163e-340.74TSA: Calanus finmarchicus comp3876908_c0_seq1 tran... [more]
gi|592769344|gb|GAXK01185224.1|2.169e-241.30TSA: Calanus finmarchicus comp3942177_c0_seq1 tran... [more]
gi|592818579|gb|GAXK01135989.1|3.449e-244.44TSA: Calanus finmarchicus comp2851050_c0_seq1 tran... [more]
gi|592815948|gb|GAXK01138620.1|1.664e+032.73TSA: Calanus finmarchicus comp7628178_c0_seq1 tran... [more]
gi|592815947|gb|GAXK01138621.1|7.450e+041.38TSA: Calanus finmarchicus comp7628178_c0_seq2 tran... [more]
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BLAST of EMLSAG00000000213 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000002131.219e-52100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1030:5352... [more]
EMLSAP000000050057.580e-1256.14pep:novel supercontig:LSalAtl2s:LSalAtl2s260:40336... [more]
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BLAST of EMLSAG00000000213 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
gi|47117189|sp|Q7ZV82.3|RL27_DANRE2.313e-747.37RecName: Full=60S ribosomal protein L27[more]
gi|47117269|sp|Q90YU1.3|RL27_ICTPU3.048e-747.37RecName: Full=60S ribosomal protein L27[more]
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BLAST of EMLSAG00000000213 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 2
Match NameE-valueIdentityDescription
gb|KFM83405.1|9.356e-849.1260S ribosomal protein L27, partial [Stegodyphus mi... [more]
EFX78542.19.551e-742.11hypothetical protein DAPPUDRAFT_231081 [Daphnia pu... [more]
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BLAST of EMLSAG00000000213 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 2
Match NameE-valueIdentityDescription
gi|225714122|gb|ACO12907.1|2.103e-856.1460S ribosomal protein L27 [Lepeophtheirus salmonis... [more]
gi|290462955|gb|ADD24525.1|2.213e-856.1460S ribosomal protein L27 [Lepeophtheirus salmonis... [more]
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BLAST of EMLSAG00000000213 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold1323_size47899-snap-gene-0.173.398e-746.30protein:Tk03421 transcript:maker-scaffold1323_size... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1030supercontigLSalAtl2s1030:53525..53767 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1030-snap-gene-0.1
Biotypeprotein_coding
EvidenceIEA
Note60S ribosomal protein L27
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000213 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000213EMLSAT00000000213-696060Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1030:53525..53767-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000213-682979 ID=EMLSAG00000000213-682979|Name=EMLSAG00000000213|organism=Lepeophtheirus salmonis|type=gene|length=243bp|location=Sequence derived from alignment at LSalAtl2s1030:53525..53767- (Lepeophtheirus salmonis)
ATGGTGAAACACCCTCAACACATGTCACATGGAGGGGACTTTTATCCAAG
AAAAGTGTATAAATAAGATAGAGGTGAAACACGCTCCAAGTGTATGTCTT
TCCACAAGGTCCTCAATTACAATAATTTAATGCATACTTGCTATAATGTG
GATATAGAATTCGATAAAGAATCCATCGGAAAGGGTCCTCAAAAACCCAA
TATAGAAACGGAAAGCCAAACAATTCGTCACTACCGACTTTAA
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