EMLSAG00000000240, EMLSAG00000000240-683006 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000240
Unique NameEMLSAG00000000240-683006
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000240 vs. C. finmarchicus
Match: gi|592932073|gb|GAXK01026480.1| (TSA: Calanus finmarchicus comp18398_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 6.210e+0
Identity = 12/32 (37.50%), Postives = 22/32 (68.75%), Query Frame = 0 
Query:   18 LDKCPPLRTILGILMRIVAMILINFSGKDNSS 49
            LD+  P   I  +L  ++A++L+N SG+D++S
Sbjct:  541 LDRLLPSEDIDRVLHEVLALVLVNISGEDSAS 636
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BLAST of EMLSAG00000000240 vs. L. salmonis peptides
Match: EMLSAP00000000240 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1032:81060:81586:-1 gene:EMLSAG00000000240 transcript:EMLSAT00000000240 description:"snap-LSalAtl2s1032-processed-gene-0.40")

HSP 1 Score: 198.749 bits (504), Expect = 7.058e-67
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0 
Query:    1 MGINYVSPCRQPLVLWKLDKCPPLRTILGILMRIVAMILINFSGKDNSSNCRRMNRWETVSKALSKSIKTNKLRDRFLVKDFSVSTIKDWASADANVL 98
            MGINYVSPCRQPLVLWKLDKCPPLRTILGILMRIVAMILINFSGKDNSSNCRRMNRWETVSKALSKSIKTNKLRDRFLVKDFSVSTIKDWASADANVL
Sbjct:    1 MGINYVSPCRQPLVLWKLDKCPPLRTILGILMRIVAMILINFSGKDNSSNCRRMNRWETVSKALSKSIKTNKLRDRFLVKDFSVSTIKDWASADANVL 98
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000240 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000240 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592932073|gb|GAXK01026480.1|6.210e+037.50TSA: Calanus finmarchicus comp18398_c1_seq1 transc... [more]
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BLAST of EMLSAG00000000240 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000002407.058e-67100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1032:8106... [more]
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BLAST of EMLSAG00000000240 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000240 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000240 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000240 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1032supercontigLSalAtl2s1032:81060..81586 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap-LSalAtl2s1032-processed-gene-0.40
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000240 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000240EMLSAT00000000240-696087Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1032:81060..81586-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000240-683006 ID=EMLSAG00000000240-683006|Name=EMLSAG00000000240|organism=Lepeophtheirus salmonis|type=gene|length=527bp|location=Sequence derived from alignment at LSalAtl2s1032:81060..81586- (Lepeophtheirus salmonis)
ATGGGGATAAACTATGTATCTCCTTGTCGGCAGCCCCTTGTGCTATGGAA
ACTGGACAAATGTCCTCCTCTTCGTACTATACTAGGAATACTCATGAGAA
TAGTGGCTATGATTCTTATAAACTTTTCTGGAAAAGATAATTCGAGCAAT
TGCCGTAGAATGAACCGGTGGGAGACCGTGTCAAAAGCTTTATCCAAATC
TATCAAGTAAAACGTAAAACTTTTGCCTGCCAGCTTTATCTCATTGATCA
TATCTTGGAAAGTACGTGGAATGTCTTCAGTAAATCTATTTCTCATAAAA
CCCTTTTGTTCGTGTGGAATAATATGCAGGAGGATCCTCACTAGCCTATT
GTTTAATATTCCCGTCAAATTTTGTAAGATGTATTCAGAAGTGTGATTGG
CCTGAAGTTTTTAATTTCAAGTGTTACTTTTTATAGAACTAATAAACTAA
GGGATCGCTTCCTAGTAAAAGATTTTTCTGTAAGCACCATCAAGGATTGG
GCAAGCGCTGATGCAAATGTTTTATAG
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