EMLSAG00000000245, EMLSAG00000000245-683011 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000245
Unique NameEMLSAG00000000245-683011
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000245 vs. C. finmarchicus
Match: gi|592791457|gb|GAXK01163111.1| (TSA: Calanus finmarchicus comp3622840_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 36.1946 bits (82), Expect = 2.020e-1
Identity = 27/82 (32.93%), Postives = 36/82 (43.90%), Query Frame = 0 
Query:    2 AHLKTVYIIVLTTISLAQAWMIHRPSK-----EKKDVAETTEYVCFPWIFNPGCPLSRWIDWDVVCRTNTLGWEMCEFKKNS 78
            A L T  I  L  +S+ + ++I +P K      KK  A  T  VC+     P  PL  W  WD     NT  W +C F  +S
Sbjct:  398 AVLLTASIYHLLALSVDRLYLIEKPFKFMRLKAKKREAYQTALVCWMLALLPAVPL--WTAWDTRTAMNTDCWNICTFPYDS 637
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BLAST of EMLSAG00000000245 vs. C. finmarchicus
Match: gi|592801313|gb|GAXK01153255.1| (TSA: Calanus finmarchicus comp4093634_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 33.113 bits (74), Expect = 1.323e+0
Identity = 24/79 (30.38%), Postives = 37/79 (46.84%), Query Frame = 0 
Query:    4 LKTVYIIVLTTISLAQAWMIHRPSK---EKKDVAETTEYVCFPWI--FNPGCPLSRWIDWDVVCRTNTLGWEMCEFKKN 77
            L  V I  L  +S+ + ++I  P K    K ++ +    + F W+  F P  PL  W DWD     +T  W +C F K+
Sbjct:  287 LVAVSIYHLLALSVDRLYLIRHPFKFLKMKHNMRQVYLTILFCWVLAFFPPAPL--WTDWDTRTDMSTNCWTICHFPKD 517
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BLAST of EMLSAG00000000245 vs. L. salmonis peptides
Match: EMLSAP00000000245 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1036:44499:46108:-1 gene:EMLSAG00000000245 transcript:EMLSAT00000000245 description:"maker-LSalAtl2s1036-augustus-gene-0.33")

HSP 1 Score: 809.675 bits (2090), Expect = 0.000e+0
Identity = 397/397 (100.00%), Postives = 397/397 (100.00%), Query Frame = 0 
Query:    1 MAHLKTVYIIVLTTISLAQAWMIHRPSKEKKDVAETTEYVCFPWIFNPGCPLSRWIDWDVVCRTNTLGWEMCEFKKNSDKRKKEANNPSSTKGEEKNYADNAHLKAEDIIIINNVHVNNHSMVVTSPSSSEGVLHELAQIESGKDEYTIIDHIVGNLAAGHDTLQESLNEQQPQVIQLEDVVLLDPSSSAYNSPTSIVDEISGIVNASIQGFQDKLNQTSEVEFDFPSIFLESGPHSDSSSEANAIEETSTLKTAEELSYSNTDKISEEALDKLVTEVFSDDYEVEEELVNQSSDKDPFVKESIGPEVFVIENLKPFHYKVNQQPTELPALNLINKATGNEIPEIISLKPFRFVPIVKVIKHKDGGADSLLNTVEENLNAEIQEFNIIKPRVYPIIS 397
            MAHLKTVYIIVLTTISLAQAWMIHRPSKEKKDVAETTEYVCFPWIFNPGCPLSRWIDWDVVCRTNTLGWEMCEFKKNSDKRKKEANNPSSTKGEEKNYADNAHLKAEDIIIINNVHVNNHSMVVTSPSSSEGVLHELAQIESGKDEYTIIDHIVGNLAAGHDTLQESLNEQQPQVIQLEDVVLLDPSSSAYNSPTSIVDEISGIVNASIQGFQDKLNQTSEVEFDFPSIFLESGPHSDSSSEANAIEETSTLKTAEELSYSNTDKISEEALDKLVTEVFSDDYEVEEELVNQSSDKDPFVKESIGPEVFVIENLKPFHYKVNQQPTELPALNLINKATGNEIPEIISLKPFRFVPIVKVIKHKDGGADSLLNTVEENLNAEIQEFNIIKPRVYPIIS
Sbjct:    1 MAHLKTVYIIVLTTISLAQAWMIHRPSKEKKDVAETTEYVCFPWIFNPGCPLSRWIDWDVVCRTNTLGWEMCEFKKNSDKRKKEANNPSSTKGEEKNYADNAHLKAEDIIIINNVHVNNHSMVVTSPSSSEGVLHELAQIESGKDEYTIIDHIVGNLAAGHDTLQESLNEQQPQVIQLEDVVLLDPSSSAYNSPTSIVDEISGIVNASIQGFQDKLNQTSEVEFDFPSIFLESGPHSDSSSEANAIEETSTLKTAEELSYSNTDKISEEALDKLVTEVFSDDYEVEEELVNQSSDKDPFVKESIGPEVFVIENLKPFHYKVNQQPTELPALNLINKATGNEIPEIISLKPFRFVPIVKVIKHKDGGADSLLNTVEENLNAEIQEFNIIKPRVYPIIS 397
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BLAST of EMLSAG00000000245 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold114_size351134-snap-gene-1.14 (protein:Tk09548 transcript:maker-scaffold114_size351134-snap-gene-1.14-mRNA-1 annotation:"hypothetical protein")

HSP 1 Score: 74.3294 bits (181), Expect = 1.177e-14
Identity = 28/60 (46.67%), Postives = 38/60 (63.33%), Query Frame = 0 
Query:   38 EYVCFPWIFNPGCPLSRWIDWDVVCRTNTLGWEMCEFKKNSDKRKKEANNPSSTKGEEKN 97
            +Y CFPW+FNPGC L+  +DWD VCRTNT+GWE C+ K  +     +      TK  E++
Sbjct:  455 QYSCFPWVFNPGCYLNSLVDWDWVCRTNTMGWEQCDLKSTNTLPNPQTAQKFGTKMNEED 514
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000245 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000245 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592791457|gb|GAXK01163111.1|2.020e-132.93TSA: Calanus finmarchicus comp3622840_c0_seq1 tran... [more]
gi|592801313|gb|GAXK01153255.1|1.323e+030.38TSA: Calanus finmarchicus comp4093634_c0_seq1 tran... [more]
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BLAST of EMLSAG00000000245 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000002450.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1036:4449... [more]
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BLAST of EMLSAG00000000245 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000245 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000245 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000245 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold114_size351134-snap-gene-1.141.177e-1446.67protein:Tk09548 transcript:maker-scaffold114_size3... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1036supercontigLSalAtl2s1036:44499..46108 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1036-augustus-gene-0.33
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000245 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000245EMLSAT00000000245-696092Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1036:44499..46108-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000245-683011 ID=EMLSAG00000000245-683011|Name=EMLSAG00000000245|organism=Lepeophtheirus salmonis|type=gene|length=1610bp|location=Sequence derived from alignment at LSalAtl2s1036:44499..46108- (Lepeophtheirus salmonis)
AGAAGAATGGCTCATCTCAAAACTGTATATATTATAGTGCTGACCACCAT
TAGTCTAGCACAAGCTTGGATGATCCATCGGCCATCTAAAGAAAAGAAAG
ATGTAGCAGAGACGACGGAGTATGTTTGTTTCCCTTGGATATTCAATCCA
GGTATGTATTGTACCCATAGGCCATAGAATATTTGGGAAATGGATGACAA
ACTGAGATTTATTTGACTTTTTTGAAAAAAGACATTTCTTTGATAACATT
TTCTGATAAAATACGCTTCTTCAAGGATCTTTTTTTTCAGAAAATACATT
TATTTGATGACCTTTTTGCAGAATAGACATTTATTTGATGACCTTTTTTC
AAAAAAGTGATATATTTGATTACTATTTTTTTATAAAAAAAGTTTCTTTA
ATGACTTTTTTTTTGAAAAAGATATTATTTATTTGATGACCTCTTCAAAA
AAAAAGACTTGTCCTTCATTGTCCCTTTTACTCCCGTCTCTTACGTCTAT
GATGATAAACATTGGTTATTATAAAAATATCCCTTTTTTAATCAACTTAT
TTTTTTTAAAGGATGTCCTTTGAGCAGATGGATCGATTGGGATGTTGTTT
GTCGAACGAATACTCTTGGATGGGAAATGTGCGAATTTAAAAAGAATTCA
GATAAGAGAAAAAAAGAAGCAAATAATCCCTCTTCTACGAAGGGAGAGGA
AAAGAATTACGCTGACAACGCCCACTTAAAAGCTGAGGATATAATCATTA
TCAATAATGTCCACGTGAATAATCATTCTATGGTTGTAACATCACCGTCA
TCATCTGAGGGTGTTTTGCATGAATTGGCTCAGATTGAGAGCGGTAAAGA
TGAATACACAATTATTGATCACATTGTTGGGAACTTAGCTGCCGGTCATG
ATACCCTACAAGAGTCTTTGAATGAACAACAGCCTCAAGTAATACAGCTT
GAGGATGTTGTTTTATTAGATCCATCCTCATCTGCCTATAATTCTCCTAC
AAGTATTGTCGATGAAATATCTGGGATCGTAAATGCAAGTATCCAAGGAT
TCCAGGATAAGCTCAATCAAACCTCTGAAGTAGAATTCGACTTCCCTTCC
ATCTTTTTGGAGAGTGGACCACATAGTGATTCTAGTTCTGAGGCTAATGC
GATAGAAGAGACGTCCACTCTTAAAACAGCAGAAGAATTATCATATTCCA
ACACTGATAAGATATCGGAAGAGGCATTAGACAAATTAGTGACAGAAGTT
TTTTCGGATGATTATGAGGTGGAAGAAGAACTCGTCAATCAATCTTCCGA
CAAAGATCCATTTGTGAAGGAGAGTATTGGCCCGGAAGTATTTGTTATAG
AAAATTTAAAACCCTTTCATTATAAAGTTAATCAACAGCCCACGGAGCTT
CCTGCATTGAATCTAATCAATAAGGCTACTGGTAATGAAATACCCGAAAT
AATATCTTTAAAACCCTTTCGTTTCGTACCCATTGTCAAAGTGATTAAAC
ATAAAGACGGTGGTGCTGATAGTTTGTTGAATACTGTAGAAGAAAATCTG
AATGCAGAAATTCAAGAATTCAATATTATTAAACCTCGAGTATATCCAAT
TATTTCTTAA
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