EMLSAG00000000246, EMLSAG00000000246-683012 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000246
Unique NameEMLSAG00000000246-683012
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000246 vs. C. finmarchicus
Match: gi|592892991|gb|GAXK01065384.1| (TSA: Calanus finmarchicus comp5397_c2_seq3 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 1.714e+0
Identity = 14/42 (33.33%), Postives = 23/42 (54.76%), Query Frame = 0 
Query:    3 HSDSIPDTRIISIIKYLHNKRRRIIDKTQEETTNQSARTTPH 44
            H  SIP  R++++ K LHN R  +    Q+E  + +   +PH
Sbjct: 1088 HGSSIPHVRVVTLTKQLHNSRAVVRLLEQQEPKSHNC-CSPH 1210
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BLAST of EMLSAG00000000246 vs. C. finmarchicus
Match: gi|592892992|gb|GAXK01065383.1| (TSA: Calanus finmarchicus comp5397_c2_seq2 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 1.726e+0
Identity = 14/42 (33.33%), Postives = 23/42 (54.76%), Query Frame = 0 
Query:    3 HSDSIPDTRIISIIKYLHNKRRRIIDKTQEETTNQSARTTPH 44
            H  SIP  R++++ K LHN R  +    Q+E  + +   +PH
Sbjct: 1088 HGSSIPHVRVVTLTKQLHNSRAVVRLLEQQEPKSHNC-CSPH 1210
[Close]
BLAST of EMLSAG00000000246 vs. C. finmarchicus
Match: gi|592892993|gb|GAXK01065382.1| (TSA: Calanus finmarchicus comp5397_c2_seq1 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 1.780e+0
Identity = 14/42 (33.33%), Postives = 23/42 (54.76%), Query Frame = 0 
Query:    3 HSDSIPDTRIISIIKYLHNKRRRIIDKTQEETTNQSARTTPH 44
            H  SIP  R++++ K LHN R  +    Q+E  + +   +PH
Sbjct: 1088 HGSSIPHVRVVTLTKQLHNSRAVVRLLEQQEPKSHNC-CSPH 1210
[Close]
BLAST of EMLSAG00000000246 vs. C. finmarchicus
Match: gi|592892990|gb|GAXK01065385.1| (TSA: Calanus finmarchicus comp5397_c6_seq1 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 2.908e+0
Identity = 14/42 (33.33%), Postives = 23/42 (54.76%), Query Frame = 0 
Query:    3 HSDSIPDTRIISIIKYLHNKRRRIIDKTQEETTNQSARTTPH 44
            H  SIP  R++++ K LHN R  +    Q+E  + +   +PH
Sbjct: 1913 HGSSIPHVRVVTLTKQLHNSRAVVRLLEQQEPKSHNC-CSPH 2035
[Close]
BLAST of EMLSAG00000000246 vs. C. finmarchicus
Match: gi|592886440|gb|GAXK01071935.1| (TSA: Calanus finmarchicus comp551902_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 5.135e+0
Identity = 24/72 (33.33%), Postives = 32/72 (44.44%), Query Frame = 0 
Query:    4 SDSIPDTRIISIIKYLHNKRRRII-DKTQEETTNQSARTTPHAPVSSLTFSSHKNHLEHETTYKRKYRRSSE 74
            SDS  +  +I   K  HNK+ R+  DK +E     S    P AP   L      + +E   T K+K R S E
Sbjct: 4767 SDSTENKELIDKCKSPHNKKLRLAKDKVEEPAITASEAVAPMAP--DLVLGDKLDVIESLDT-KQKRRASKE 4973
[Close]
BLAST of EMLSAG00000000246 vs. C. finmarchicus
Match: gi|592886441|gb|GAXK01071934.1| (TSA: Calanus finmarchicus comp551902_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 5.136e+0
Identity = 24/72 (33.33%), Postives = 32/72 (44.44%), Query Frame = 0 
Query:    4 SDSIPDTRIISIIKYLHNKRRRII-DKTQEETTNQSARTTPHAPVSSLTFSSHKNHLEHETTYKRKYRRSSE 74
            SDS  +  +I   K  HNK+ R+  DK +E     S    P AP   L      + +E   T K+K R S E
Sbjct: 4833 SDSTENKELIDKCKSPHNKKLRLAKDKVEEPAITASEAVAPMAP--DLVLGDKLDVIESLDT-KQKRRASKE 5039
[Close]
BLAST of EMLSAG00000000246 vs. L. salmonis peptides
Match: EMLSAP00000000246 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1036:46118:49548:-1 gene:EMLSAG00000000246 transcript:EMLSAT00000000246 description:"maker-LSalAtl2s1036-snap-gene-0.38")

HSP 1 Score: 149.443 bits (376), Expect = 3.100e-48
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 
Query:    1 MFHSDSIPDTRIISIIKYLHNKRRRIIDKTQEETTNQSARTTPHAPVSSLTFSSHKNHLEHETTYKRKYRRSSE 74
            MFHSDSIPDTRIISIIKYLHNKRRRIIDKTQEETTNQSARTTPHAPVSSLTFSSHKNHLEHETTYKRKYRRSSE
Sbjct:    1 MFHSDSIPDTRIISIIKYLHNKRRRIIDKTQEETTNQSARTTPHAPVSSLTFSSHKNHLEHETTYKRKYRRSSE 74
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000246 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000246 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 6
Match NameE-valueIdentityDescription
gi|592892991|gb|GAXK01065384.1|1.714e+033.33TSA: Calanus finmarchicus comp5397_c2_seq3 transcr... [more]
gi|592892992|gb|GAXK01065383.1|1.726e+033.33TSA: Calanus finmarchicus comp5397_c2_seq2 transcr... [more]
gi|592892993|gb|GAXK01065382.1|1.780e+033.33TSA: Calanus finmarchicus comp5397_c2_seq1 transcr... [more]
gi|592892990|gb|GAXK01065385.1|2.908e+033.33TSA: Calanus finmarchicus comp5397_c6_seq1 transcr... [more]
gi|592886440|gb|GAXK01071935.1|5.135e+033.33TSA: Calanus finmarchicus comp551902_c0_seq2 trans... [more]
gi|592886441|gb|GAXK01071934.1|5.136e+033.33TSA: Calanus finmarchicus comp551902_c0_seq1 trans... [more]
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BLAST of EMLSAG00000000246 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000002463.100e-48100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1036:4611... [more]
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BLAST of EMLSAG00000000246 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000246 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000246 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000246 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1036supercontigLSalAtl2s1036:46118..49548 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1036-snap-gene-0.38
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000246 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000246EMLSAT00000000246-696093Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1036:46118..49548-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000246-683012 ID=EMLSAG00000000246-683012|Name=EMLSAG00000000246|organism=Lepeophtheirus salmonis|type=gene|length=3431bp|location=Sequence derived from alignment at LSalAtl2s1036:46118..49548- (Lepeophtheirus salmonis)
CATGTTTCATTCTGATTCCATTCCTGATACAAGGATCATCTCGATAATAA
AGTACCTACATAACAAAAGAAGAAGAATAATTGATAAAACACAAGAAGAG
ACGACTAATCAATCTGCACGAACGACACCTCAGTAGTTATTATTGATTTC
CCTTCCCTCTCTGTTGCGCCTGTCGTTGGATTTTATATAATATTAATATA
TTTATTATTGATAATAATTTATCAGTGCTCCTGTTTCTTCATTGACCTTC
TCTTCTCATAAGAACCACTTGGAACACGAAACTACTTACAAGCGGAGTAA
GTGCACAAAGATTCATAAAGCTTATAATTATTAGTGTTGTGTGAGCCCTT
ATTTGTCTGTACTACAACGGGGGCGTCCGCAGGGGAGAGGCTGTAGCCCC
CCCTTCAGGAATTTTTGATTCTCACTAGAAAATTTGACATAAAAAAAAAA
ATTAATTTTTTTTTCAAAAAATTTAATATTCGTAAATTTAATTAAATTTT
TCATTTTTTTTTTCAAAAAAAATCTATATTTTAGAATTTTTTTTTCCAAA
AAAATTGTAGTTTTTATATATACAGGTTAAAAAAAAAATTCCATTTTTTT
TTTTTGGAGAAGAGCTAATCTTTGATTTTTTTTTTCCAAAAAAATTAGTT
TTTTTGTGAATCGCTGTAGTTTTTTTGAAATTTTTTCTCCGAAAAAATGT
AATATTTGAATTTTTTTTTCAAAAAATATTTATATTTAGAATTTAATANN
NNNNNNNNNNNTTTAAATTCATTTTTTGAGAATAACTGTAGGATTATTAA
AATTTTTGTTTGCCAAAAAATTGTAATTTTTAGAATTTAAAAAAAAAAAT
TGCAAAAACCAANAAGTTTCATGAGTGATATGCAGGACTGAACTAGACCG
AACTGAGACTGAACTGAACGAGACTCCAGTCTTGCGTCCTAAATAGGGAC
TAACACAACACCACTTAAGTATGTTAAAAACATTAAGCAGTGGACCTTTT
TCTCTGAGTGAGCCATGAGACATTTTAAAATGTCATTCTGTGAGAGCCAT
TCAGTATGCTTAAACTAAATGTAAGTAAATATGTGCATTTGATGTAAGAC
CAACACTTTTAACCCTGCTCGACCGTTTGATAGAGCACATTCTGAGTCAA
CAAATCTTCAATATACAATGTATAGAAATATTTTATTTCAATGCTTAAAA
ATGATGCACGTTCTCTAAAATACATTTCTACCATGAATCCACATCTGAAG
CGTTTGTTAGAGGCCTATAAAAAACCGTGGGGTTTGTTAAAAAAAACAAT
ATTAATTGTTTTTACTTTTGTGAGGACCTTGAATGGTTAAAGTACAATAA
GTCTCTGAATTCTTAATTTCTTACAGGGCATAACATACATACAGTTCATT
TGTTCATTCACACAATAGGAAATCAAAACCATTATCAGGAACGTTTGCAC
GATTATATATGTATATATATTTAGGGGGGGGGGGGGGTTTGGAATTAAAA
AAAAATATATATATATTTGCTCAGATGCATAATTTTCCCAGAATTTGCTT
TTTAAGCAAAAAAAATCCTATTTTTTGTGTGTATTTTTTTTCCTAACAAA
TATTAATAGGTATGTTAAGCGTTTCAATTTAAAGGCAAAAACCAAAGACA
TTTGATGGTGCTCTTCAGTGAAGCCACTATTTCCTATATTGATTCGACTG
CAACAGAGTAATTTACTTTTTTTGACAAAAATTTAAAAAAAAAAAAAAAA
GTTCATTTTCTATGCTATTTTAATTCTAGAATATAATTTTTCCACATTCA
ATATTACATAGATTGTTCCTCTCAGCTTCATGAAATTTGGTTCAAGGATA
TTTGAAACATGTAAATAAGTAAGAAAGTTTAAAAAAAATAAATTACTTTA
AAAAATGATAGAAATTCATCCCTAATATTATTTCAATCTTGAAATTATAG
AAAACACTTTACTCTCCTTTAACAGGACAAAATATTTNNNNNNNNNNNNN
TTTCTATCATTTTTTAAGTATTTTATATTTTAGTATCATTAACAAATTTT
ATGAAGCTGAAGATCTATGTGATATTGTATGTAAAAATGTCATAACTATG
GAATTAAAGAAGCAGAGAAAAATTCAAAAGAAAAGGCTACATCAAATAAC
ATTTGCCTTCATATCTTTTTTTGGGGGTGGGGGAATCTTTTAACATGCTT
AGTAACTATCTTTATTTAATAACATATACAAACTTTCAATGCTAGCAAAT
AGCTTCCCTGAAGGAGTATTTATAACATAAAAGATTAACTATTGATCATT
AAACCTCTTCCCGGGATCAGGTTTACCGTGAGTGGATCGTAGAGCAACGG
TAAATGTGCAGTGATCTTCTCTTTTCTTAAATTTGAATTTAATTTCAAAG
ATAAACTTCGGTTTATTTATTTATGACAAGAATGTTGAATCCTCTTTTTT
TTAGAAAATTTAATGCCGGCCCCGTTTTATATGTATAGATTTTTTCAAGT
GACTTTACCTATTTTTTGTAGTCAAATAACCCCATAATTTGACTTATAGA
ATTAATCCGAGCCGGCCTGATAGGACTGTAGTACTTTATAACCATTCAAC
ACTATTAGTTAGCCAATTTACCCCAACTGTGGGCCTATTCTTCATTTTAA
ATCCTTAGTAGAACATTTTAATTTACAGCTCAGCGAATTCAAATTTTTGA
ATTCAAATACACGACCAATGTTAATGGATAACAATGTAGACGACGACTAC
CTTTTTTATCCACACTGAACCTCAACGGTCAAAAATAAAACTCAATAGAG
TTGCTGTAGTTTCATCATAATCATAAAATTGATTCTGAAAGGGGGGGGGG
GGTGGAGAGACTGATAAGGAAATTAGTCTTAACACCGATCCAACAAGACT
AGGAGTGATAAATTAATTATTTCTATCGTATAAATGTATTATATTTGGGC
TTTAGTACAAATATTCTATTTAAAAATATCAATTATTCTCTGAGTGTTTT
CCTTTATCAAAAAAGTTTGATTTGAGTATTCGTTTTCAAAGCAATAAAAG
CAAATGACGTACTAATTTGTAGAAATCAACAATTTATCTCATGTAAAAGA
GGAGATTTTTCAAATATTCTACAATTATATACTGCATAGTATGAGATTTA
ATGCAATAAACATCCTCTTTAATTGTTATTCACGTTCTTTACATAGAGTT
AATAAGATAAAAAATTCTGATGGAGTAGGAAGGTGTGTCCAATTTATCTT
CAAAAAGATAAATTAAAGAAAGAAGAGAGGAAGAGATGAAACAGCTCCTT
TCTTTCTTCATTGCTCATTGAGATTGATTAACCTCAATAATGATAAACCT
AAATGAATTGTTACCATCTTCAAAATAAGGGCTAATTTCTTTTATGTTTC
TCTTTAAGAATATAGACGGAGTAGTGAGTGA
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