EMLSAG00000000315, EMLSAG00000000315-683081 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000315
Unique NameEMLSAG00000000315-683081
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000315 vs. C. finmarchicus
Match: gi|592856088|gb|GAXK01101456.1| (TSA: Calanus finmarchicus comp414129_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 33.113 bits (74), Expect = 2.060e-2
Identity = 18/43 (41.86%), Postives = 23/43 (53.49%), Query Frame = 0 
Query:    2 ESLSCHKCGTLSSSARYVEDCTGASTVE--DCAPNEVCVVFKR 42
            +SLSC+ CG LSS    +EDC   +T     C   E CV + R
Sbjct:  162 QSLSCYSCGALSSDLSMMEDCINTTTTTLITCREGEACVTYSR 290
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BLAST of EMLSAG00000000315 vs. C. finmarchicus
Match: gi|592856089|gb|GAXK01101455.1| (TSA: Calanus finmarchicus comp414129_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 33.113 bits (74), Expect = 2.587e-2
Identity = 18/43 (41.86%), Postives = 23/43 (53.49%), Query Frame = 0 
Query:    2 ESLSCHKCGTLSSSARYVEDCTGASTVE--DCAPNEVCVVFKR 42
            +SLSC+ CG LSS    +EDC   +T     C   E CV + R
Sbjct:  176 QSLSCYSCGALSSDLSMMEDCINTTTTTLITCREGEACVTYSR 304
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BLAST of EMLSAG00000000315 vs. C. finmarchicus
Match: gi|592894238|gb|GAXK01064137.1| (TSA: Calanus finmarchicus comp183900_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 4.439e-1
Identity = 16/55 (29.09%), Postives = 25/55 (45.45%), Query Frame = 0 
Query:   22 CTGASTVEDCAPNEVCVVFKRLHVCVIPTCVTTRNMIFINKEPIDYFEIKRAHCP 76
            C+   TV     + VC   + +H+C I TC++      +N EP   F    +H P
Sbjct:  188 CSHGQTVHGINYSTVCSTSRCVHLCSIITCISYLQHFLLNPEPCHPFLWPSSHIP 352
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BLAST of EMLSAG00000000315 vs. C. finmarchicus
Match: gi|592905146|gb|GAXK01053229.1| (TSA: Calanus finmarchicus comp354353_c4_seq102 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 4.453e-1
Identity = 20/80 (25.00%), Postives = 39/80 (48.75%), Query Frame = 0 
Query:    4 LSCHKCGTL-SSSARYVEDCTGASTVEDCAPNEVCVVF----KRLHVCVIPTCVTTRNMIFINKEPIDYFEIKRAHCPQR 78
            L C+ CG+L +  A    D + AS V+ C+P E C+++     +     +  C +T  ++    +P+    +  +HC +R
Sbjct:  704 LQCYSCGSLLNPDASCQFDRSAASQVQTCSPGEACLMYTWRQSQDEAATLRECFSTSVLLGSISDPL----VPASHCDKR 931
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BLAST of EMLSAG00000000315 vs. C. finmarchicus
Match: gi|592905128|gb|GAXK01053247.1| (TSA: Calanus finmarchicus comp354353_c4_seq120 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 5.947e-1
Identity = 21/80 (26.25%), Postives = 39/80 (48.75%), Query Frame = 0 
Query:    4 LSCHKCGTL-SSSARYVEDCTGASTVEDCAPNEVCVVF----KRLHVCVIPTCVTTRNMIFINKEPIDYFEIKRAHCPQR 78
            L C+ CG+L S  A    D + AS V+ C+P E C+++     +     +  C +T  ++    +P+    +  +HC +R
Sbjct:  489 LQCYSCGSLLSPQASCQFDRSDASQVQTCSPGEACLMYTWRQSQDEAATLRECFSTSVLLGSISDPL----VPASHCDKR 716
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BLAST of EMLSAG00000000315 vs. C. finmarchicus
Match: gi|592905109|gb|GAXK01053266.1| (TSA: Calanus finmarchicus comp354353_c4_seq139 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 6.217e+0
Identity = 19/67 (28.36%), Postives = 32/67 (47.76%), Query Frame = 0 
Query:    6 CHKCGTLSSSARYVEDCTGASTVED---CAPNEVCVVFKRLH----VCVIPTCVTTRNMIFINKEPI 65
            C++CGTL S++    D   +S  E    C P EVC+ +        V VI  C++   ++    +P+
Sbjct:  146 CYQCGTLFSASGSACDTFDSSDPEQQDFCQPGEVCLWYSWKQSDSTVSVIRECLSESVLLGSVDDPL 346
[Close]
BLAST of EMLSAG00000000315 vs. C. finmarchicus
Match: gi|592905111|gb|GAXK01053264.1| (TSA: Calanus finmarchicus comp354353_c4_seq137 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 6.372e+0
Identity = 19/67 (28.36%), Postives = 32/67 (47.76%), Query Frame = 0 
Query:    6 CHKCGTLSSSARYVEDCTGASTVED---CAPNEVCVVFKRLH----VCVIPTCVTTRNMIFINKEPI 65
            C++CGTL S++    D   +S  E    C P EVC+ +        V VI  C++   ++    +P+
Sbjct:  158 CYQCGTLFSASGSACDTFDSSDPEQQDFCQPGEVCLWYSWKQSDSTVSVIRECLSESVLLGSVDDPL 358
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BLAST of EMLSAG00000000315 vs. C. finmarchicus
Match: gi|592905104|gb|GAXK01053271.1| (TSA: Calanus finmarchicus comp354353_c4_seq144 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 6.846e+0
Identity = 19/67 (28.36%), Postives = 32/67 (47.76%), Query Frame = 0 
Query:    6 CHKCGTLSSSARYVEDCTGASTVED---CAPNEVCVVFKRLH----VCVIPTCVTTRNMIFINKEPI 65
            C++CGTL S++    D   +S  E    C P EVC+ +        V VI  C++   ++    +P+
Sbjct:  158 CYQCGTLFSASGSACDTFDSSDPEQQDFCQPGEVCLWYSWRQSDSTVSVIRECLSKAVLLGSVDDPL 358
[Close]
BLAST of EMLSAG00000000315 vs. C. finmarchicus
Match: gi|592905103|gb|GAXK01053272.1| (TSA: Calanus finmarchicus comp354353_c4_seq145 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 7.105e+0
Identity = 19/67 (28.36%), Postives = 32/67 (47.76%), Query Frame = 0 
Query:    6 CHKCGTLSSSARYVEDCTGASTVED---CAPNEVCVVFKRLH----VCVIPTCVTTRNMIFINKEPI 65
            C++CGTL S++    D   +S  E    C P EVC+ +        V VI  C++   ++    +P+
Sbjct:  146 CYQCGTLFSASGSACDTFDSSDPEQQDFCQPGEVCLWYSWRQSDSTVSVIRECLSKAVLLGSVDDPL 346
[Close]
BLAST of EMLSAG00000000315 vs. C. finmarchicus
Match: gi|592905168|gb|GAXK01053207.1| (TSA: Calanus finmarchicus comp354353_c4_seq80 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 7.326e+0
Identity = 18/74 (24.32%), Postives = 32/74 (43.24%), Query Frame = 0 
Query:    1 VESLSCHKCGTLSSSARYVEDC-----TGASTVEDCAPNEVCVVF----KRLHVCVIPTCVTTRNMIFINKEPI 65
            ++ + CH+CG+L SS+    DC     +       C P E C+ +     R     I  C +T  ++    +P+
Sbjct: 1385 LDRVQCHQCGSLFSSSSNNPDCDVFDESDPLQQNYCQPGEACLWYSWQKSRSSTSFIRECFSTSILLGSIDDPL 1606
[Close]
BLAST of EMLSAG00000000315 vs. L. salmonis peptides
Match: EMLSAP00000000315 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1047:18044:19110:-1 gene:EMLSAG00000000315 transcript:EMLSAT00000000315 description:"maker-LSalAtl2s1047-snap-gene-0.11")

HSP 1 Score: 161.77 bits (408), Expect = 5.677e-53
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0 
Query:    1 VESLSCHKCGTLSSSARYVEDCTGASTVEDCAPNEVCVVFKRLHVCVIPTCVTTRNMIFINKEPIDYFEIKRAHCPQR 78
            VESLSCHKCGTLSSSARYVEDCTGASTVEDCAPNEVCVVFKRLHVCVIPTCVTTRNMIFINKEPIDYFEIKRAHCPQR
Sbjct:    1 VESLSCHKCGTLSSSARYVEDCTGASTVEDCAPNEVCVVFKRLHVCVIPTCVTTRNMIFINKEPIDYFEIKRAHCPQR 78
[Close]
BLAST of EMLSAG00000000315 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold249_size238305-snap-gene-1.12 (protein:Tk01320 transcript:maker-scaffold249_size238305-snap-gene-1.12-mRNA-1 annotation:"PREDICTED: hemicentin-1-like")

HSP 1 Score: 57.3806 bits (137), Expect = 9.673e-12
Identity = 27/43 (62.79%), Postives = 32/43 (74.42%), Query Frame = 0 
Query:    4 LSCHKCGTLSSSARYVEDC--TGASTVEDCAPNEVCVVFKRLH 44
            LSCH+CGTLS SAR + DC     S+VE+C  NE CVVFKRL+
Sbjct:   19 LSCHRCGTLSPSARNIRDCEPNQQSSVEECGINEACVVFKRLY 61
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000315 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000315 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 18
Match NameE-valueIdentityDescription
gi|592856088|gb|GAXK01101456.1|2.060e-241.86TSA: Calanus finmarchicus comp414129_c0_seq2 trans... [more]
gi|592856089|gb|GAXK01101455.1|2.587e-241.86TSA: Calanus finmarchicus comp414129_c0_seq1 trans... [more]
gi|592894238|gb|GAXK01064137.1|4.439e-129.09TSA: Calanus finmarchicus comp183900_c0_seq1 trans... [more]
gi|592905146|gb|GAXK01053229.1|4.453e-125.00TSA: Calanus finmarchicus comp354353_c4_seq102 tra... [more]
gi|592905128|gb|GAXK01053247.1|5.947e-126.25TSA: Calanus finmarchicus comp354353_c4_seq120 tra... [more]
gi|592905109|gb|GAXK01053266.1|6.217e+028.36TSA: Calanus finmarchicus comp354353_c4_seq139 tra... [more]
gi|592905111|gb|GAXK01053264.1|6.372e+028.36TSA: Calanus finmarchicus comp354353_c4_seq137 tra... [more]
gi|592905104|gb|GAXK01053271.1|6.846e+028.36TSA: Calanus finmarchicus comp354353_c4_seq144 tra... [more]
gi|592905103|gb|GAXK01053272.1|7.105e+028.36TSA: Calanus finmarchicus comp354353_c4_seq145 tra... [more]
gi|592905168|gb|GAXK01053207.1|7.326e+024.32TSA: Calanus finmarchicus comp354353_c4_seq80 tran... [more]

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BLAST of EMLSAG00000000315 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000003155.677e-53100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1047:1804... [more]
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BLAST of EMLSAG00000000315 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000315 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000315 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000315 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold249_size238305-snap-gene-1.129.673e-1262.79protein:Tk01320 transcript:maker-scaffold249_size2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1047supercontigLSalAtl2s1047:18044..19110 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1047-snap-gene-0.11
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000315 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000315EMLSAT00000000315-696162Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1047:18044..19110-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000315-683081 ID=EMLSAG00000000315-683081|Name=EMLSAG00000000315|organism=Lepeophtheirus salmonis|type=gene|length=1067bp|location=Sequence derived from alignment at LSalAtl2s1047:18044..19110- (Lepeophtheirus salmonis)
GTTGAGTCACTCTCATGTCACAAATGTGGTACATTATCAAGCAGTGCACG
ATATGTCGAGGACTGCACTGGAGCCTCCACAGTGGAAGACTGTGCTCCAA
ATGAAGTTTGTGTCGTTTTTAAACGACTGTATAAAAAGGGTTCAAGTAGC
ATTCGAGGATGTTTTGATAAGTCCCAATCACTACCAGGGATAAAGGACCT
GGATGCTAGCTCTGAATGCAAATTTGTTCCTGAGAAACGATCCTCTGTAA
AGGTAATTTATATATTTTACTGTATAACGCCATATATTCATATTTGATGC
ATGAGCTTTCAAATCTTCGTTTTGAGCATTTTCACTTTGATTTTTTGAAA
ACATACAAATTTATGTTATTTGCTATTACTAATATATTTTAAATGTAGTA
TTTAACAAAACGTAATGGGAATTGCTTACTCATGATTTTTCAGTGTACCA
AACATATTGCTTCATCAATAAAGTGTCAAAACCACGTGTTTAAAAATGTA
ATTTGAGAGGTTTTATATAGAGAAAATCATTAATTGTATTCATAAACATT
AGCAAAAATAGTTACTTTAAATAAAATGGCTCTCAATTTATAAGCAAAAT
CTTGATTAACTCTCGTCAAACTATATGGGTACAATATTTATGTACTACAT
CCGTTTTTCTAAAACCCTGAGGGATACGAGATTTCTTGATATCTCTACAT
TTTTGCAATAGATTATACTGAATAAATTTTGTCAAAAAACACGTTAAGGT
TCCCTATATGTATAATCGATTAATTGTTACAGCCTTAAGAGGCAGGGKGA
GTACAATTGCACCTAAATACTTTTTATTTATATGATGACTGTATAAATAA
TATATTTATTTTTTTAATTAGAAAATTCTGACAAGGCATTAATCTTGAGT
TTCTTATTGGGTTAAAGACTCATCTCATGTTATGCACTTACATTAATTTG
TGTATTTTTAGGCATGTATGTGTAATTCCGACTTGTGTAACGACAAGGAA
TATGATCTTCATAAACAAAGAGCCAATCGACTATTTCGAAATCAAACGGG
CTCATTGCCCTCAGCGA
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