EMLSAG00000000320, EMLSAG00000000320-683086 (gene) Lepeophtheirus salmonis

Overview


Name	EMLSAG00000000320
Unique Name	EMLSAG00000000320-683086
Type	gene
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Nothing found

Homology

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BLAST of EMLSAG00000000320 vs. GO
Match: - (symbol:Mrps28 "mitochondrial ribosomal protein S28" species:10090 "Mus musculus" [GO:0005739 "mitochondrion" evidence=ISO;IDA] [GO:0005840 "ribosome" evidence=IEA] [GO:0008150 "biological_process" evidence=ND] [GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0044822 "poly(A) RNA binding" evidence=ISO] MGI:MGI:1913480 GO:GO:0005739 GO:GO:0005840 InterPro:IPR022967 SMART:SM00316 CTD:28957 eggNOG:NOG245406 GeneTree:ENSGT00390000001057 HOGENOM:HOG000230806 HOVERGEN:HBG036126 KO:K17407 OMA:CRTRAVT OrthoDB:EOG7288SV TreeFam:TF315097 InterPro:IPR019375 Pfam:PF10246 ChiTaRS:MRPS28 EMBL:AK011036 EMBL:BC028530 RefSeq:NP_079710.3 UniGene:Mm.38460 ProteinModelPortal:Q9CY16 PhosphoSite:Q9CY16 PaxDb:Q9CY16 PRIDE:Q9CY16 Ensembl:ENSMUST00000042148 GeneID:66230 KEGG:mmu:66230 UCSC:uc008ooq.2 InParanoid:Q9CY16 NextBio:321027 PRO:PR:Q9CY16 Bgee:Q9CY16 CleanEx:MM_MRPS28 Genevestigator:Q9CY16 Uniprot:Q9CY16)

HSP 1 Score: 92.0485 bits (227), Expect = 1.474e-22
Identity = 41/87 (47.13%), Postives = 60/87 (68.97%), Query Frame = 0

Query:   19 LVIWTPDKDFHSIVVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVLLGL 105
            L    P KD    +V+G ++H++EDDLYID G KF CVC++P  + E ++RG +VR+ +  LEL+ +FLG   + T++EAD VLLGL
Sbjct:   88 LTQLGPAKD---KLVIGRIFHIVEDDLYIDFGGKFHCVCKRPDVDGEKYQRGTRVRLRLLDLELTSRFLGGTTDTTILEADAVLLGL 171

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BLAST of EMLSAG00000000320 vs. GO
Match: - (symbol:mRpS28 "mitochondrial ribosomal protein S28" species:7227 "Drosophila melanogaster" [GO:0005763 "mitochondrial small ribosomal subunit" evidence=ISS] [GO:0006412 "translation" evidence=ISS] [GO:0003735 "structural constituent of ribosome" evidence=ISS] EMBL:AE013599 GO:GO:0006412 GO:GO:0003735 GO:GO:0005763 CTD:28957 eggNOG:NOG245406 GeneTree:ENSGT00390000001057 KO:K17407 OrthoDB:EOG7288SV InterPro:IPR019375 Pfam:PF10246 EMBL:BT044321 RefSeq:NP_523785.2 UniGene:Dm.20392 STRING:7227.FBpp0085893 EnsemblMetazoa:FBtr0086714 GeneID:37136 KEGG:dme:Dmel_CG5497 UCSC:CG5497-RA FlyBase:FBgn0034361 InParanoid:A1ZBA5 OMA:DYVRGAR GenomeRNAi:37136 NextBio:802127 PRO:PR:A1ZBA5 Uniprot:A1ZBA5)

HSP 1 Score: 92.0485 bits (227), Expect = 1.720e-22
Identity = 42/76 (55.26%), Postives = 56/76 (73.68%), Query Frame = 0

Query:   32 VVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVLLGLYS 107
            VV G+++HV+ DDLYID G KF CVC +P  N+ ++ RG +VR+ IK LELS KFLG   ++T++EAD  LLGL S
Sbjct:  101 VVSGKIFHVVGDDLYIDFGWKFHCVCSRPTRNASDYVRGARVRLRIKDLELSTKFLGSSKDITILEADCHLLGLLS 176

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BLAST of EMLSAG00000000320 vs. GO
Match: - (symbol:MRPS28 "28S ribosomal protein S28, mitochondrial" species:9606 "Homo sapiens" [GO:0005739 "mitochondrion" evidence=IEA] GO:GO:0005739 InterPro:IPR022967 SMART:SM00316 InterPro:IPR019375 Pfam:PF10246 HGNC:HGNC:14513 ChiTaRS:MRPS28 EMBL:AC009686 EMBL:AC018952 EMBL:AC036214 ProteinModelPortal:E5RGC7 Ensembl:ENST00000519120 NextBio:35498019 ArrayExpress:E5RGC7 Bgee:E5RGC7 Uniprot:E5RGC7)

HSP 1 Score: 87.4261 bits (215), Expect = 1.370e-21
Identity = 40/97 (41.24%), Postives = 62/97 (63.92%), Query Frame = 0

Query:   15 RGFSLVIWTPDKDFHSIVVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVLLGLYSKSSS 111
            R   L    P KD    +V+G ++H++E+DLYID G KF CVCR+P  + E +++G +VR+ +  LEL+ +FLG   + T++EA+ VLLG+     S
Sbjct:    3 RHSPLTQMGPAKD---KLVIGRIFHIVENDLYIDFGGKFHCVCRRPEVDGEKYQKGTRVRLRLLDLELTSRFLGATTDTTVLEANAVLLGIQESKDS 96

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BLAST of EMLSAG00000000320 vs. GO
Match: - (symbol:MRPS28 "Uncharacterized protein" species:9615 "Canis lupus familiaris" [GO:0005739 "mitochondrion" evidence=IEA] GO:GO:0005739 InterPro:IPR022967 SMART:SM00316 GeneTree:ENSGT00390000001057 OMA:CRTRAVT TreeFam:TF315097 InterPro:IPR019375 Pfam:PF10246 EMBL:AAEX03015896 Ensembl:ENSCAFT00000013335 Uniprot:F6XC21)

HSP 1 Score: 89.3521 bits (220), Expect = 1.530e-21
Identity = 38/87 (43.68%), Postives = 60/87 (68.97%), Query Frame = 0

Query:   19 LVIWTPDKDFHSIVVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVLLGL 105
            L    P KD    +V+G ++H++E+DLYID G KF CVCR+P  + E +++G +VR+ +  LEL+ +FLG   + T++EAD +LLG+
Sbjct:   90 LTQMGPAKD---KLVIGRIFHIVENDLYIDFGGKFHCVCRRPEVDGEKYQKGTRVRLRLLDLELTSRFLGATTDTTILEADAILLGI 173

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BLAST of EMLSAG00000000320 vs. GO
Match: - (symbol:MRPS28 "28S ribosomal protein S28, mitochondrial" species:9913 "Bos taurus" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] GO:GO:0005739 GO:GO:0005840 InterPro:IPR022967 SMART:SM00316 EMBL:BC112719 RefSeq:NP_001039866.1 UniGene:Bt.19581 IntAct:P82928 STRING:9913.ENSBTAP00000001718 PRIDE:P82928 Ensembl:ENSBTAT00000001718 GeneID:535290 KEGG:bta:535290 CTD:28957 eggNOG:NOG245406 GeneTree:ENSGT00390000001057 HOGENOM:HOG000230806 HOVERGEN:HBG036126 InParanoid:P82928 KO:K17407 OMA:CRTRAVT OrthoDB:EOG7288SV TreeFam:TF315097 NextBio:20876685 InterPro:IPR019375 Pfam:PF10246 Uniprot:P82928)

HSP 1 Score: 88.9669 bits (219), Expect = 2.284e-21
Identity = 39/93 (41.94%), Postives = 61/93 (65.59%), Query Frame = 0

Query:   19 LVIWTPDKDFHSIVVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVLLGLYSKSSS 111
            L    P KD    +V+G ++H++E+DLYID G KF CVC++P  + E +++G +VR+ +  LEL+ +FLG   + T++EA+ VLLGL     S
Sbjct:   90 LTQMGPAKD---KIVIGRIFHIVENDLYIDFGGKFHCVCKRPEVDGEKYQKGTRVRLRLLDLELTSRFLGATTDTTILEAEAVLLGLQESKDS 179

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BLAST of EMLSAG00000000320 vs. GO
Match: - (symbol:MRPS28 "28S ribosomal protein S28, mitochondrial" species:9606 "Homo sapiens" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005763 "mitochondrial small ribosomal subunit" evidence=TAS] [GO:0008150 "biological_process" evidence=ND] [GO:0044822 "poly(A) RNA binding" evidence=IDA] EMBL:CH471068 GO:GO:0005763 InterPro:IPR022967 SMART:SM00316 CTD:28957 eggNOG:NOG245406 HOGENOM:HOG000230806 HOVERGEN:HBG036126 KO:K17407 OMA:CRTRAVT OrthoDB:EOG7288SV TreeFam:TF315097 InterPro:IPR019375 Pfam:PF10246 EMBL:AF070663 EMBL:AK315739 EMBL:BC010150 EMBL:AB061209 RefSeq:NP_054737.1 UniGene:Hs.521124 ProteinModelPortal:Q9Y2Q9 BioGrid:118784 IntAct:Q9Y2Q9 MINT:MINT-8052210 STRING:9606.ENSP00000276585 PhosphoSite:Q9Y2Q9 DMDM:22001973 PaxDb:Q9Y2Q9 PRIDE:Q9Y2Q9 DNASU:28957 Ensembl:ENST00000276585 GeneID:28957 KEGG:hsa:28957 UCSC:uc003ybp.3 GeneCards:GC08M080830 HGNC:HGNC:14513 HPA:HPA027202 MIM:611990 neXtProt:NX_Q9Y2Q9 PharmGKB:PA31016 InParanoid:Q9Y2Q9 ChiTaRS:MRPS28 GeneWiki:MRPS28 GenomeRNAi:28957 NextBio:51779 PRO:PR:Q9Y2Q9 ArrayExpress:Q9Y2Q9 Bgee:Q9Y2Q9 CleanEx:HS_MRPS28 CleanEx:HS_MRPS35 Genevestigator:Q9Y2Q9 Uniprot:Q9Y2Q9)

HSP 1 Score: 88.1965 bits (217), Expect = 3.672e-21
Identity = 39/93 (41.94%), Postives = 61/93 (65.59%), Query Frame = 0

Query:   19 LVIWTPDKDFHSIVVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVLLGLYSKSSS 111
            L    P KD    +V+G ++H++E+DLYID G KF CVCR+P  + E +++G +VR+ +  LEL+ +FLG   + T++EA+ VLLG+     S
Sbjct:   89 LTQMGPAKD---KLVIGRIFHIVENDLYIDFGGKFHCVCRRPEVDGEKYQKGTRVRLRLLDLELTSRFLGATTDTTVLEANAVLLGIQESKDS 178

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BLAST of EMLSAG00000000320 vs. GO
Match: - (symbol:mrps28 "mitochondrial ribosomal protein S28" species:7955 "Danio rerio" [GO:0008150 "biological_process" evidence=ND] ZFIN:ZDB-GENE-061110-52 InterPro:IPR022967 SMART:SM00316 GeneTree:ENSGT00390000001057 HOVERGEN:HBG036126 OrthoDB:EOG7288SV TreeFam:TF315097 InterPro:IPR019375 Pfam:PF10246 EMBL:BX649315 Ensembl:ENSDART00000060898 OMA:VCKRPAV PRO:PR:A5PMP2 Uniprot:A5PMP2)

HSP 1 Score: 88.1965 bits (217), Expect = 3.724e-21
Identity = 34/74 (45.95%), Postives = 55/74 (74.32%), Query Frame = 0

Query:   32 VVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVLLGL 105
            + +G+++H++ DDLY+D G KF CVC++P  + E ++RG KVR+ ++ LEL+ +FLG   + TL+EA+  LLGL
Sbjct:   96 IAIGKIFHIVNDDLYVDFGGKFHCVCKRPAVDGEKYQRGSKVRLRLEDLELTSRFLGATTDTTLLEAEATLLGL 169

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BLAST of EMLSAG00000000320 vs. GO
Match: - (symbol:mrps-28 species:6239 "Caenorhabditis elegans" [GO:0000003 "reproduction" evidence=IMP] eggNOG:NOG245406 GeneTree:ENSGT00390000001057 KO:K17407 OrthoDB:EOG7288SV InterPro:IPR019375 Pfam:PF10246 EMBL:AL032637 PIR:T26870 RefSeq:NP_507808.1 UniGene:Cel.1765 ProteinModelPortal:Q9XWP0 STRING:6239.Y43F8C.8 PaxDb:Q9XWP0 PRIDE:Q9XWP0 EnsemblMetazoa:Y43F8C.8 GeneID:180287 KEGG:cel:CELE_Y43F8C.8 UCSC:Y43F8C.8 CTD:180287 WormBase:Y43F8C.8 HOGENOM:HOG000017883 InParanoid:Q9XWP0 OMA:KFNAVCK NextBio:908744 PRO:PR:Q9XWP0 Uniprot:Q9XWP0)

HSP 1 Score: 77.7962 bits (190), Expect = 2.892e-17
Identity = 36/81 (44.44%), Postives = 57/81 (70.37%), Query Frame = 0

Query:   27 DFHSIVVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVLLGLYS 107
            DF+  +VVG++   +++D+YID G KF  VC+ P  NSE +R G +V + +   ELS++FLG ++++TL+EAD VL+ L S
Sbjct:   62 DFNGRLVVGKIAQRVQEDVYIDFGLKFNAVCKVPALNSEAYRSGARVLIRLIDPELSERFLGSKHDLTLLEADAVLVRLLS 142

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BLAST of EMLSAG00000000320 vs. GO
Match: - (symbol:MRPS28 "Uncharacterized protein" species:9823 "Sus scrofa" [GO:0005739 "mitochondrion" evidence=IEA] GO:GO:0005739 GeneTree:ENSGT00390000001057 OrthoDB:EOG7288SV TreeFam:TF315097 InterPro:IPR019375 Pfam:PF10246 EMBL:CU302196 Ensembl:ENSSSCT00000006752 Uniprot:F1RX97)

HSP 1 Score: 50.8322 bits (120), Expect = 6.700e-8
Identity = 17/29 (58.62%), Postives = 26/29 (89.66%), Query Frame = 0

Query:   32 VVVGEVYHVIEDDLYIDIGHKFPCVCRKP 60
            +V+G+++H++EDDLYID G KF CVC++P
Sbjct:   98 LVIGQIFHIVEDDLYIDFGGKFHCVCKRP 126

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BLAST of EMLSAG00000000320 vs. GO
Match: - (symbol:Mrps28 "Protein Mrps28" species:10116 "Rattus norvegicus" [GO:0005739 "mitochondrion" evidence=IEA] RGD:1597461 GO:GO:0005739 CTD:28957 eggNOG:NOG245406 GeneTree:ENSGT00390000001057 KO:K17407 OrthoDB:EOG7288SV TreeFam:TF315097 InterPro:IPR019375 Pfam:PF10246 EMBL:AABR06014818 EMBL:AY383686 RefSeq:NP_001041374.1 UniGene:Rn.12952 STRING:10116.ENSRNOP00000042427 Ensembl:ENSRNOT00000046368 GeneID:689025 KEGG:rno:689025 UCSC:RGD:1597461 NextBio:737746 Genevestigator:Q6TXG8 Uniprot:Q6TXG8)

HSP 1 Score: 50.447 bits (119), Expect = 3.053e-7
Identity = 21/42 (50.00%), Postives = 30/42 (71.43%), Query Frame = 0

Query:   24 PDKDFHSIVVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSE 65
            P KD    +V+G ++H++EDDLYID G KF CVC++P  + E
Sbjct:   92 PAKDK---LVIGRIFHIVEDDLYIDFGGKFHCVCKRPDVDGE 130

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BLAST of EMLSAG00000000320 vs. C. finmarchicus
Match: gi|592792462|gb|GAXK01162106.1| (TSA: Calanus finmarchicus comp35785_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 98.5969 bits (244), Expect = 1.269e-25
Identity = 43/75 (57.33%), Postives = 59/75 (78.67%), Query Frame = 0

Query:   32 VVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVLLGLY 106
             VVG +YHV+ DDLYID GHKF CVC KPR     + RG +V++ +KSLELS++FLGY+ +++L+EAD VLLG++
Sbjct:   52 TVVGRIYHVVGDDLYIDFGHKFGCVCTKPREGRGYYIRGTEVKLKVKSLELSERFLGYDRDISLLEADCVLLGIH 276

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BLAST of EMLSAG00000000320 vs. C. finmarchicus
Match: gi|592810038|gb|GAXK01144530.1| (TSA: Calanus finmarchicus comp366026_c0_seq7 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 5.257e+0
Identity = 14/33 (42.42%), Postives = 20/33 (60.61%), Query Frame = 0

Query:   32 VVVGEVYHVIEDDLYIDIGHKFPC-VCRKPRNN 63
            + +GE+   +ED+   DI +  PC VC K RNN
Sbjct: 1958 LALGEILKCLEDECQDDILYPPPCKVCLKVRNN 2056

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BLAST of EMLSAG00000000320 vs. C. finmarchicus
Match: gi|592810039|gb|GAXK01144529.1| (TSA: Calanus finmarchicus comp366026_c0_seq6 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 5.259e+0
Identity = 14/33 (42.42%), Postives = 20/33 (60.61%), Query Frame = 0

Query:   32 VVVGEVYHVIEDDLYIDIGHKFPC-VCRKPRNN 63
            + +GE+   +ED+   DI +  PC VC K RNN
Sbjct: 1976 LALGEILKCLEDECQDDILYPPPCKVCLKVRNN 2074

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BLAST of EMLSAG00000000320 vs. C. finmarchicus
Match: gi|592810040|gb|GAXK01144528.1| (TSA: Calanus finmarchicus comp366026_c0_seq5 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 5.263e+0
Identity = 14/33 (42.42%), Postives = 20/33 (60.61%), Query Frame = 0

Query:   32 VVVGEVYHVIEDDLYIDIGHKFPC-VCRKPRNN 63
            + +GE+   +ED+   DI +  PC VC K RNN
Sbjct: 2016 LALGEILKCLEDECQDDILYPPPCKVCLKVRNN 2114

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BLAST of EMLSAG00000000320 vs. C. finmarchicus
Match: gi|592810043|gb|GAXK01144525.1| (TSA: Calanus finmarchicus comp366026_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 5.278e+0
Identity = 14/33 (42.42%), Postives = 20/33 (60.61%), Query Frame = 0

Query:   32 VVVGEVYHVIEDDLYIDIGHKFPC-VCRKPRNN 63
            + +GE+   +ED+   DI +  PC VC K RNN
Sbjct: 2163 LALGEILKCLEDECQDDILYPPPCKVCLKVRNN 2261

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BLAST of EMLSAG00000000320 vs. C. finmarchicus
Match: gi|592810041|gb|GAXK01144527.1| (TSA: Calanus finmarchicus comp366026_c0_seq4 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 5.591e+0
Identity = 14/33 (42.42%), Postives = 20/33 (60.61%), Query Frame = 0

Query:   32 VVVGEVYHVIEDDLYIDIGHKFPC-VCRKPRNN 63
            + +GE+   +ED+   DI +  PC VC K RNN
Sbjct: 1976 LALGEILKCLEDECQDDILYPPPCKVCLKVRNN 2074

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BLAST of EMLSAG00000000320 vs. C. finmarchicus
Match: gi|592810042|gb|GAXK01144526.1| (TSA: Calanus finmarchicus comp366026_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 5.595e+0
Identity = 14/33 (42.42%), Postives = 20/33 (60.61%), Query Frame = 0

Query:   32 VVVGEVYHVIEDDLYIDIGHKFPC-VCRKPRNN 63
            + +GE+   +ED+   DI +  PC VC K RNN
Sbjct: 2016 LALGEILKCLEDECQDDILYPPPCKVCLKVRNN 2114

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BLAST of EMLSAG00000000320 vs. C. finmarchicus
Match: gi|592810044|gb|GAXK01144524.1| (TSA: Calanus finmarchicus comp366026_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 5.610e+0
Identity = 14/33 (42.42%), Postives = 20/33 (60.61%), Query Frame = 0

Query:   32 VVVGEVYHVIEDDLYIDIGHKFPC-VCRKPRNN 63
            + +GE+   +ED+   DI +  PC VC K RNN
Sbjct: 2163 LALGEILKCLEDECQDDILYPPPCKVCLKVRNN 2261

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BLAST of EMLSAG00000000320 vs. C. finmarchicus
Match: gi|592847303|gb|GAXK01110241.1| (TSA: Calanus finmarchicus comp6640149_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 5.806e+0
Identity = 13/51 (25.49%), Postives = 28/51 (54.90%), Query Frame = 0

Query:   52 KFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVL 102
            +F C    P  + +   +  +V+    S+ L+ K+  YEN +T++E+D ++
Sbjct:  166 EFACAVWTPGISKDEINQIERVQKAAFSIILANKYKSYENALTVLESDTLM 318

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BLAST of EMLSAG00000000320 vs. C. finmarchicus
Match: gi|592810029|gb|GAXK01144539.1| (TSA: Calanus finmarchicus comp366026_c0_seq16 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 6.157e+0
Identity = 14/35 (40.00%), Postives = 20/35 (57.14%), Query Frame = 0

Query:   31 IVVVGEVYHVIEDDLYIDIGHKFPC-VCRKPRNNS 64
             + +GE+   +ED+   DI +  PC VC K RNN 
Sbjct: 1955 CLALGEILKCLEDECQDDILYPPPCKVCLKVRNNP 2059

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BLAST of EMLSAG00000000320 vs. L. salmonis peptides
Match: EMLSAP00000000320 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1049:49286:50380:-1 gene:EMLSAG00000000320 transcript:EMLSAT00000000320 description:"maker-LSalAtl2s1049-snap-gene-0.30")

HSP 1 Score: 228.409 bits (581), Expect = 3.466e-78
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0

Query:    1 FIFSLFARKNKIIPRGFSLVIWTPDKDFHSIVVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVLLGLYSKSSS 111
            FIFSLFARKNKIIPRGFSLVIWTPDKDFHSIVVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVLLGLYSKSSS
Sbjct:    1 FIFSLFARKNKIIPRGFSLVIWTPDKDFHSIVVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVLLGLYSKSSS 111

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BLAST of EMLSAG00000000320 vs. SwissProt
Match: gi|22001972|sp|Q9CY16.1|RT28_MOUSE (RecName: Full=28S ribosomal protein S28, mitochondrial; Short=MRP-S28; Short=S28mt; Flags: Precursor)

HSP 1 Score: 92.0485 bits (227), Expect = 1.485e-23
Identity = 41/87 (47.13%), Postives = 60/87 (68.97%), Query Frame = 0

Query:   19 LVIWTPDKDFHSIVVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVLLGL 105
            L    P KD    +V+G ++H++EDDLYID G KF CVC++P  + E ++RG +VR+ +  LEL+ +FLG   + T++EAD VLLGL
Sbjct:   88 LTQLGPAKD---KLVIGRIFHIVEDDLYIDFGGKFHCVCKRPDVDGEKYQRGTRVRLRLLDLELTSRFLGGTTDTTILEADAVLLGL 171

[Close]

BLAST of EMLSAG00000000320 vs. SwissProt
Match: gi|109940163|sp|P82928.2|RT28_BOVIN (RecName: Full=28S ribosomal protein S28, mitochondrial; Short=MRP-S28; Short=S28mt; Flags: Precursor)

HSP 1 Score: 88.9669 bits (219), Expect = 2.563e-22
Identity = 39/93 (41.94%), Postives = 61/93 (65.59%), Query Frame = 0

Query:   19 LVIWTPDKDFHSIVVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVLLGLYSKSSS 111
            L    P KD    +V+G ++H++E+DLYID G KF CVC++P  + E +++G +VR+ +  LEL+ +FLG   + T++EA+ VLLGL     S
Sbjct:   90 LTQMGPAKD---KIVIGRIFHIVENDLYIDFGGKFHCVCKRPEVDGEKYQKGTRVRLRLLDLELTSRFLGATTDTTILEAEAVLLGLQESKDS 179

[Close]

BLAST of EMLSAG00000000320 vs. SwissProt
Match: gi|22001973|sp|Q9Y2Q9.1|RT28_HUMAN (RecName: Full=28S ribosomal protein S28, mitochondrial; Short=MRP-S28; Short=S28mt; AltName: Full=28S ribosomal protein S35, mitochondrial; Short=MRP-S35; Short=S35mt; Flags: Precursor)

HSP 1 Score: 88.1965 bits (217), Expect = 4.150e-22
Identity = 39/93 (41.94%), Postives = 61/93 (65.59%), Query Frame = 0

Query:   19 LVIWTPDKDFHSIVVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVLLGLYSKSSS 111
            L    P KD    +V+G ++H++E+DLYID G KF CVCR+P  + E +++G +VR+ +  LEL+ +FLG   + T++EA+ VLLG+     S
Sbjct:   89 LTQMGPAKD---KLVIGRIFHIVENDLYIDFGGKFHCVCRRPEVDGEKYQKGTRVRLRLLDLELTSRFLGATTDTTVLEANAVLLGIQESKDS 178

[Close]

BLAST of EMLSAG00000000320 vs. Select Arthropod Genomes
Match: gb|EFA00128.1| (28S ribosomal protein S28, mitochondrial-like Protein [Tribolium castaneum])

HSP 1 Score: 105.916 bits (263), Expect = 1.628e-29
Identity = 51/84 (60.71%), Postives = 61/84 (72.62%), Query Frame = 0

Query:   27 DFHSIVVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVLLGLYSKSS 110
            D    VV G V+HV++DDLYID G KF CVC +PR N+  + RG KVR+LIK LELS KFLGYE ++TL+EAD VLLGL    S
Sbjct:   79 DPEGKVVTGRVFHVVDDDLYIDFGWKFHCVCPRPRRNASEYVRGSKVRILIKELELSSKFLGYEKDITLLEADCVLLGLVQDRS 162

[Close]

BLAST of EMLSAG00000000320 vs. Select Arthropod Genomes
Match: XP_001121371.2 (PREDICTED: 28S ribosomal protein S28, mitochondrial [Apis mellifera])

HSP 1 Score: 98.2117 bits (243), Expect = 2.175e-26
Identity = 43/80 (53.75%), Postives = 62/80 (77.50%), Query Frame = 0

Query:   32 VVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVLLGLYSKSSS 111
            VV+GE++H++ +DLYID G KF CVC +P+ NS  ++RG KV++LIK LELS +FLG   ++T++EAD +LLGL   SS+
Sbjct:   98 VVLGEIFHIVNNDLYIDFGWKFHCVCPRPQKNSLQYKRGSKVKLLIKDLELSTRFLGASTDLTMLEADCILLGLVYTSSN 177

[Close]

BLAST of EMLSAG00000000320 vs. Select Arthropod Genomes
Match: EEB19926.1 (mitochondrial 28S ribosomal protein S28, putative [Pediculus humanus corporis])

HSP 1 Score: 95.1301 bits (235), Expect = 4.974e-25
Identity = 48/85 (56.47%), Postives = 63/85 (74.12%), Query Frame = 0

Query:   27 DFHSIVVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVLLG-LYSKSS 110
            D    +V+G +YHV+++DLYID G KFP VC+KP+  SE +  GVKVR+LIK LELS KF+  + E+TL EAD VLLG L +KS+
Sbjct:   89 DPEGKIVIGTIYHVMDNDLYIDFGWKFPTVCQKPQKFSEQYYPGVKVRLLIKDLELSTKFINTDKEITLNEADCVLLGRLNTKSN 173

[Close]

BLAST of EMLSAG00000000320 vs. Select Arthropod Genomes
Match: EAA10773.3 (AGAP006650-PA [Anopheles gambiae str. PEST])

HSP 1 Score: 94.7449 bits (234), Expect = 6.019e-25
Identity = 41/85 (48.24%), Postives = 60/85 (70.59%), Query Frame = 0

Query:   27 DFHSIVVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVLLGLYSKSSS 111
            D    +V G+++H++E+DLYID G KF CVC +P  N E++ RG +VR+ +K LELS +FLG   ++TL+EAD  LLGL S  ++
Sbjct:   90 DPEGKIVTGKIFHIVENDLYIDFGWKFHCVCTRPAKNGEDYVRGARVRLRVKDLELSTRFLGSNKDLTLLEADCQLLGLISSPAT 174

[Close]

BLAST of EMLSAG00000000320 vs. Select Arthropod Genomes
Match: AAF57671.2 (mitochondrial ribosomal protein S28 [Drosophila melanogaster])

HSP 1 Score: 92.0485 bits (227), Expect = 8.755e-24
Identity = 42/76 (55.26%), Postives = 56/76 (73.68%), Query Frame = 0

Query:   32 VVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVLLGLYS 107
            VV G+++HV+ DDLYID G KF CVC +P  N+ ++ RG +VR+ IK LELS KFLG   ++T++EAD  LLGL S
Sbjct:  101 VVSGKIFHVVGDDLYIDFGWKFHCVCSRPTRNASDYVRGARVRLRIKDLELSTKFLGSSKDITILEADCHLLGLLS 176

[Close]

BLAST of EMLSAG00000000320 vs. Select Arthropod Genomes
Match: EFX67560.1 (hypothetical protein DAPPUDRAFT_63835 [Daphnia pulex])

HSP 1 Score: 89.7373 bits (221), Expect = 1.563e-23
Identity = 47/107 (43.93%), Postives = 62/107 (57.94%), Query Frame = 0

Query:    3 FSLFARKNKIIPRGFSLVIWTPDKDFHSIVVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVLLGLYSKS 109
            F+   R +K+I  G          D    +V G+++ V+ +DLYID G KF CVC KP  N   F RG +VR+ ++ LELS KFLG   E+TL EAD +LLGL   S
Sbjct:   37 FATLLRHSKLIQLG----------DPQGKIVEGKIFQVVGNDLYIDFGGKFHCVCSKPNANESEFVRGSRVRLRLQELELSTKFLGASQELTLREADALLLGLARTS 133

[Close]

BLAST of EMLSAG00000000320 vs. Select Arthropod Genomes
Match: EFX65368.1 (hypothetical protein DAPPUDRAFT_65530 [Daphnia pulex])

HSP 1 Score: 89.7373 bits (221), Expect = 1.563e-23
Identity = 47/107 (43.93%), Postives = 62/107 (57.94%), Query Frame = 0

Query:    3 FSLFARKNKIIPRGFSLVIWTPDKDFHSIVVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVLLGLYSKS 109
            F+   R +K+I  G          D    +V G+++ V+ +DLYID G KF CVC KP  N   F RG +VR+ ++ LELS KFLG   E+TL EAD +LLGL   S
Sbjct:   37 FATLLRHSKLIQLG----------DPQGKIVEGKIFQVVGNDLYIDFGGKFHCVCSKPNANESEFVRGSRVRLRLQELELSTKFLGASQELTLREADALLLGLARTS 133

[Close]

BLAST of EMLSAG00000000320 vs. Select Arthropod Genomes
Match: gb|KPM05270.1| (28S ribosomal protein S28, mitochondrial-like protein [Sarcoptes scabiei])

HSP 1 Score: 79.337 bits (194), Expect = 2.738e-19
Identity = 31/75 (41.33%), Postives = 55/75 (73.33%), Query Frame = 0

Query:   32 VVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVLLGLY 106
            ++VGE+ +V+++D+YID G KF  +C+ P+N  +N+ +G ++++ +  LELS +FLG   +MTL+EAD  L+ L+
Sbjct:   66 ILVGEIVNVVDNDVYIDFGFKFLSICKLPKNQMKNYIKGARIKLKLNDLELSDRFLGSNQDMTLLEADATLIRLH 140

[Close]

BLAST of EMLSAG00000000320 vs. Select Arthropod Genomes
Match: gb|KFM73332.1| (28S ribosomal protein S28, mitochondrial, partial [Stegodyphus mimosarum])

HSP 1 Score: 51.2174 bits (121), Expect = 1.199e-8
Identity = 21/39 (53.85%), Postives = 27/39 (69.23%), Query Frame = 0

Query:   27 DFHSIVVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSE 65
            D     V+G+++ V+  DLYID G KF CVCRKP+ NSE
Sbjct:   91 DPRGKTVIGKIFQVVNTDLYIDFGGKFYCVCRKPKRNSE 129

[Close]

BLAST of EMLSAG00000000320 vs. nr
Match: gi|290562245|gb|ADD38519.1| (28S ribosomal protein S28, mitochondrial [Lepeophtheirus salmonis])

HSP 1 Score: 168.703 bits (426), Expect = 9.631e-52
Identity = 82/90 (91.11%), Postives = 82/90 (91.11%), Query Frame = 0

Query:   22 WTPDKDFHSIVVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVLLGLYSKSSS 111
            W    D    VVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVLLGLYSKSSS
Sbjct:   58 WIQMGDPKGKVVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVLLGLYSKSSS 147

[Close]

BLAST of EMLSAG00000000320 vs. nr
Match: gi|1059395166|ref|XP_017771161.1| (PREDICTED: 28S ribosomal protein S28, mitochondrial [Nicrophorus vespilloides])

HSP 1 Score: 106.686 bits (265), Expect = 4.064e-27
Identity = 52/105 (49.52%), Postives = 70/105 (66.67%), Query Frame = 0

Query:   11 KIIPRGFSLVIWTPD----KDFHSIVVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVLLGLYSKSSS 111
            K  P+ FS ++         D    VV G VYHV+EDDLYID G KF CVC +P+ N +NF RG +VR+++K LELS +FLG++ ++TL+EAD VLLGL  +  S
Sbjct:   60 KAAPKSFSSLLRNSKFIDMGDPEGKVVTGTVYHVVEDDLYIDFGWKFHCVCPRPKKNGDNFVRGSRVRLMVKDLELSSRFLGFDKDLTLLEADCVLLGLSQERQS 164

[Close]

BLAST of EMLSAG00000000320 vs. nr
Match: gi|270003680|gb|EFA00128.1| (28S ribosomal protein S28, mitochondrial-like Protein [Tribolium castaneum])

HSP 1 Score: 105.916 bits (263), Expect = 7.968e-27
Identity = 51/84 (60.71%), Postives = 61/84 (72.62%), Query Frame = 0

Query:   27 DFHSIVVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVLLGLYSKSS 110
            D    VV G V+HV++DDLYID G KF CVC +PR N+  + RG KVR+LIK LELS KFLGYE ++TL+EAD VLLGL    S
Sbjct:   79 DPEGKVVTGRVFHVVDDDLYIDFGWKFHCVCPRPRRNASEYVRGSKVRILIKELELSSKFLGYEKDITLLEADCVLLGLVQDRS 162

[Close]

BLAST of EMLSAG00000000320 vs. nr
Match: gi|1133418955|ref|XP_019865012.1| (PREDICTED: 28S ribosomal protein S28, mitochondrial [Aethina tumida])

HSP 1 Score: 105.916 bits (263), Expect = 8.125e-27
Identity = 49/84 (58.33%), Postives = 63/84 (75.00%), Query Frame = 0

Query:   27 DFHSIVVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVLLGLYSKSS 110
            D    VVVG+++H +EDDLYID G KF CVC +P+ N  ++ RG KVR++IK LELS KFLGYE ++TL+EAD VLLGL  + S
Sbjct:   83 DPEGKVVVGKIFHTVEDDLYIDFGWKFHCVCPRPKKNGSSYVRGSKVRLMIKDLELSSKFLGYEKDLTLLEADCVLLGLIQERS 166

[Close]

BLAST of EMLSAG00000000320 vs. nr
Match: gi|642916266|ref|XP_974639.2| (PREDICTED: 28S ribosomal protein S28, mitochondrial [Tribolium castaneum])

HSP 1 Score: 105.916 bits (263), Expect = 8.224e-27
Identity = 51/84 (60.71%), Postives = 61/84 (72.62%), Query Frame = 0

Query:   27 DFHSIVVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVLLGLYSKSS 110
            D    VV G V+HV++DDLYID G KF CVC +PR N+  + RG KVR+LIK LELS KFLGYE ++TL+EAD VLLGL    S
Sbjct:   81 DPEGKVVTGRVFHVVDDDLYIDFGWKFHCVCPRPRRNASEYVRGSKVRILIKELELSSKFLGYEKDITLLEADCVLLGLVQDRS 164

[Close]

BLAST of EMLSAG00000000320 vs. nr
Match: gi|662202361|ref|XP_008474474.1| (PREDICTED: 28S ribosomal protein S28, mitochondrial [Diaphorina citri])

HSP 1 Score: 105.145 bits (261), Expect = 9.695e-27
Identity = 43/83 (51.81%), Postives = 65/83 (78.31%), Query Frame = 0

Query:   27 DFHSIVVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVLLGLYSKS 109
            D  + +V G+++HV++DDLYID G KFPCVC +PR N+E + RG +VR+++K LELS KFLG E ++T++EAD +LLG+  ++
Sbjct:   58 DAENKLVYGKIFHVVDDDLYIDFGGKFPCVCTRPRKNAEEYVRGARVRLILKDLELSTKFLGSEKDLTILEADAILLGVVKRN 140

[Close]

BLAST of EMLSAG00000000320 vs. nr
Match: gi|1070183054|ref|XP_018365460.1| (PREDICTED: 28S ribosomal protein S28, mitochondrial [Trachymyrmex cornetzi] >gi|1009397528|gb|KYN18039.1| 28S ribosomal protein S28, mitochondrial [Trachymyrmex cornetzi])

HSP 1 Score: 103.219 bits (256), Expect = 2.812e-25
Identity = 48/81 (59.26%), Postives = 60/81 (74.07%), Query Frame = 0

Query:   27 DFHSIVVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVLLGLYS 107
            D    VV+GE+YHV+ DDLYID G KFPCVC++P  N + + RG KVR+ IK LELS KFLG E ++TL+EAD  L+GL S
Sbjct:  111 DPEGKVVIGEIYHVVGDDLYIDFGWKFPCVCQRPVKNGQYYVRGSKVRLRIKDLELSSKFLGAETDVTLLEADCTLIGLIS 191

[Close]

BLAST of EMLSAG00000000320 vs. nr
Match: gi|1073700423|gb|JAT93268.1| (putative mitochondrial ribosomal protein mrps35 [Amblyomma aureolatum])

HSP 1 Score: 102.064 bits (253), Expect = 3.819e-25
Identity = 45/97 (46.39%), Postives = 65/97 (67.01%), Query Frame = 0

Query:   14 PRGFSLVI----WTPDKDFHSIVVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVLLGLY 106
            P+ FS ++    W    D    +V+G ++H++EDDLYID G KF CVCR+P  NS  + RG +VR+ +  +E+S +FLG E ++TL+EAD  LLGLY
Sbjct:   73 PQRFSTLLRNSKWIDLGDPEGRIVIGRIFHIVEDDLYIDFGGKFHCVCRRPARNSGEYIRGARVRLRLNDMEMSSRFLGAEKDLTLLEADATLLGLY 169

[Close]

BLAST of EMLSAG00000000320 vs. nr
Match: gi|1080052173|ref|XP_018567624.1| (PREDICTED: 28S ribosomal protein S28, mitochondrial [Anoplophora glabripennis] >gi|1080052175|ref|XP_018567626.1| PREDICTED: 28S ribosomal protein S28, mitochondrial [Anoplophora glabripennis])

HSP 1 Score: 101.679 bits (252), Expect = 4.812e-25
Identity = 44/79 (55.70%), Postives = 60/79 (75.95%), Query Frame = 0

Query:   32 VVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVLLGLYSKSS 110
            +V+G+++HV+EDDLYID G KF CVC +P  N+ N+ RG +VR+ I  LELS KFLGYE ++TL+EAD  LLGL  + +
Sbjct:   88 IVIGKIFHVVEDDLYIDFGWKFHCVCPRPTKNASNYVRGAEVRLRINDLELSSKFLGYEKDLTLLEADCTLLGLVQQRT 166

[Close]

BLAST of EMLSAG00000000320 vs. nr
Match: gi|1035624963|ref|XP_016920531.1| (PREDICTED: 28S ribosomal protein S28, mitochondrial [Apis cerana])

HSP 1 Score: 99.7525 bits (247), Expect = 2.645e-24
Identity = 44/79 (55.70%), Postives = 61/79 (77.22%), Query Frame = 0

Query:   32 VVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVLLGLYSKSS 110
            VV+GE++H++ +DLYID G KF CVC +P+ NS  +RRG KV++LIK LELS +FLG   ++T++EAD +LLGL   SS
Sbjct:   93 VVLGEIFHIVNNDLYIDFGWKFHCVCPRPQKNSSQYRRGSKVKLLIKDLELSTRFLGASTDLTMLEADCILLGLVHISS 171

The following BLAST results are available for this feature:

BLAST of EMLSAG00000000320 vs. GO
BLAST of EMLSAG00000000320 vs. C. finmarchicus
BLAST of EMLSAG00000000320 vs. L. salmonis peptides
BLAST of EMLSAG00000000320 vs. SwissProt
BLAST of EMLSAG00000000320 vs. Select Arthropod Genomes
BLAST of EMLSAG00000000320 vs. nr
BLAST of EMLSAG00000000320 vs. Tigriopus kingsejongenis genes

BLAST of EMLSAG00000000320 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 11


Match Name	E-value	Identity	Description
-	1.474e-22	47.13	symbol:Mrps28 "mitochondrial ribosomal protein S28...	[more]
-	1.720e-22	55.26	symbol:mRpS28 "mitochondrial ribosomal protein S28...	[more]
-	1.370e-21	41.24	symbol:MRPS28 "28S ribosomal protein S28, mitochon...	[more]
-	1.530e-21	43.68	symbol:MRPS28 "Uncharacterized protein" species:96...	[more]
-	2.284e-21	41.94	symbol:MRPS28 "28S ribosomal protein S28, mitochon...	[more]
-	3.672e-21	41.94	symbol:MRPS28 "28S ribosomal protein S28, mitochon...	[more]
-	3.724e-21	45.95	symbol:mrps28 "mitochondrial ribosomal protein S28...	[more]
-	2.892e-17	44.44	symbol:mrps-28 species:6239 "Caenorhabditis elegan...	[more]
-	6.700e-8	58.62	symbol:MRPS28 "Uncharacterized protein" species:98...	[more]
-	3.053e-7	50.00	symbol:Mrps28 "Protein Mrps28" species:10116 "Ratt...	[more]

Pages

BLAST of EMLSAG00000000320 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 14


Match Name	E-value	Identity	Description
gi\|592792462\|gb\|GAXK01162106.1\|	1.269e-25	57.33	TSA: Calanus finmarchicus comp35785_c0_seq1 transc...	[more]
gi\|592810038\|gb\|GAXK01144530.1\|	5.257e+0	42.42	TSA: Calanus finmarchicus comp366026_c0_seq7 trans...	[more]
gi\|592810039\|gb\|GAXK01144529.1\|	5.259e+0	42.42	TSA: Calanus finmarchicus comp366026_c0_seq6 trans...	[more]
gi\|592810040\|gb\|GAXK01144528.1\|	5.263e+0	42.42	TSA: Calanus finmarchicus comp366026_c0_seq5 trans...	[more]
gi\|592810043\|gb\|GAXK01144525.1\|	5.278e+0	42.42	TSA: Calanus finmarchicus comp366026_c0_seq2 trans...	[more]
gi\|592810041\|gb\|GAXK01144527.1\|	5.591e+0	42.42	TSA: Calanus finmarchicus comp366026_c0_seq4 trans...	[more]
gi\|592810042\|gb\|GAXK01144526.1\|	5.595e+0	42.42	TSA: Calanus finmarchicus comp366026_c0_seq3 trans...	[more]
gi\|592810044\|gb\|GAXK01144524.1\|	5.610e+0	42.42	TSA: Calanus finmarchicus comp366026_c0_seq1 trans...	[more]
gi\|592847303\|gb\|GAXK01110241.1\|	5.806e+0	25.49	TSA: Calanus finmarchicus comp6640149_c0_seq1 tran...	[more]
gi\|592810029\|gb\|GAXK01144539.1\|	6.157e+0	40.00	TSA: Calanus finmarchicus comp366026_c0_seq16 tran...	[more]

Pages

BLAST of EMLSAG00000000320 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1


Match Name	E-value	Identity	Description
EMLSAP00000000320	3.466e-78	100.00	pep:novel supercontig:LSalAtl2s:LSalAtl2s1049:4928...	[more]

BLAST of EMLSAG00000000320 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 3


Match Name	E-value	Identity	Description
gi\|22001972\|sp\|Q9CY16.1\|RT28_MOUSE	1.485e-23	47.13	RecName: Full=28S ribosomal protein S28, mitochond...	[more]
gi\|109940163\|sp\|P82928.2\|RT28_BOVIN	2.563e-22	41.94	RecName: Full=28S ribosomal protein S28, mitochond...	[more]
gi\|22001973\|sp\|Q9Y2Q9.1\|RT28_HUMAN	4.150e-22	41.94	RecName: Full=28S ribosomal protein S28, mitochond...	[more]

BLAST of EMLSAG00000000320 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 9


Match Name	E-value	Identity	Description
gb\|EFA00128.1\|	1.628e-29	60.71	28S ribosomal protein S28, mitochondrial-like Prot...	[more]
XP_001121371.2	2.175e-26	53.75	PREDICTED: 28S ribosomal protein S28, mitochondria...	[more]
EEB19926.1	4.974e-25	56.47	mitochondrial 28S ribosomal protein S28, putative ...	[more]
EAA10773.3	6.019e-25	48.24	AGAP006650-PA [Anopheles gambiae str. PEST]	[more]
AAF57671.2	8.755e-24	55.26	mitochondrial ribosomal protein S28 [Drosophila me...	[more]
EFX67560.1	1.563e-23	43.93	hypothetical protein DAPPUDRAFT_63835 [Daphnia pul...	[more]
EFX65368.1	1.563e-23	43.93	hypothetical protein DAPPUDRAFT_65530 [Daphnia pul...	[more]
gb\|KPM05270.1\|	2.738e-19	41.33	28S ribosomal protein S28, mitochondrial-like prot...	[more]
gb\|KFM73332.1\|	1.199e-8	53.85	28S ribosomal protein S28, mitochondrial, partial ...	[more]

BLAST of EMLSAG00000000320 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 25


Match Name	E-value	Identity	Description
gi\|290562245\|gb\|ADD38519.1\|	9.631e-52	91.11	28S ribosomal protein S28, mitochondrial [Lepeopht...	[more]
gi\|1059395166\|ref\|XP_017771161.1\|	4.064e-27	49.52	PREDICTED: 28S ribosomal protein S28, mitochondria...	[more]
gi\|270003680\|gb\|EFA00128.1\|	7.968e-27	60.71	28S ribosomal protein S28, mitochondrial-like Prot...	[more]
gi\|1133418955\|ref\|XP_019865012.1\|	8.125e-27	58.33	PREDICTED: 28S ribosomal protein S28, mitochondria...	[more]
gi\|642916266\|ref\|XP_974639.2\|	8.224e-27	60.71	PREDICTED: 28S ribosomal protein S28, mitochondria...	[more]
gi\|662202361\|ref\|XP_008474474.1\|	9.695e-27	51.81	PREDICTED: 28S ribosomal protein S28, mitochondria...	[more]
gi\|1070183054\|ref\|XP_018365460.1\|	2.812e-25	59.26	PREDICTED: 28S ribosomal protein S28, mitochondria...	[more]
gi\|1073700423\|gb\|JAT93268.1\|	3.819e-25	46.39	putative mitochondrial ribosomal protein mrps35 [A...	[more]
gi\|1080052173\|ref\|XP_018567624.1\|	4.812e-25	55.70	PREDICTED: 28S ribosomal protein S28, mitochondria...	[more]
gi\|1035624963\|ref\|XP_016920531.1\|	2.645e-24	55.70	PREDICTED: 28S ribosomal protein S28, mitochondria...	[more]

Pages

BLAST of EMLSAG00000000320 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s1049	supercontig	LSalAtl2s1049:49286..50380 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016
Blast vs. GO	2014-04-02
TblastN vs C. finmarchicus TSA	2014-05-09
Blastp vs. self	2014-05-10
Blastp vs. SwissProt	2017-02-10
Blastp vs. Selected Arthropods	2017-02-20
Blastp vs. NR (2/2017)	2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins	2018-04-18

Properties


Property Name	Value
Logic name	ensemblgenomes
Description	maker-LSalAtl2s1049-snap-gene-0.30
Biotype	protein_coding
Evidence	IEA
Note	28S ribosomal protein S28, mitochondrial [Lepeophtheirus salmonis]

Cross References

External references for this gene


Database	Accession
Ensembl Metazoa (gene)	EMLSAG00000000320 (primary cross-reference)

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
EMLSAT00000000320	EMLSAT00000000320-696167	Lepeophtheirus salmonis	mRNA

Sequences

The following sequences are available for this feature:

gene from alignment at LSalAtl2s1049:49286..50380-

gene from alignment at LSalAtl2s1049:49286..50380-

Legend: mRNA

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAG00000000320-683086 ID=EMLSAG00000000320-683086|Name=EMLSAG00000000320|organism=Lepeophtheirus salmonis|type=gene|length=1095bp|location=Sequence derived from alignment at LSalAtl2s1049:49286..50380- (Lepeophtheirus salmonis)
TTTATTTTTTCTCTTTTCGCTCGTAAAAATAAAATAATACCGCGAGGTTT
CTCTCTTGTAATATGGACTCCAGACAAAGATTTCCATAGTATAGTATATA
TATTTTCTAGATTTGGGAAATTATACATAACTATACCATTGAAACAATTT
CAATACACTATATTTTTTACTATTAAATAATAAGATTACACTATTGATTT
TCGAAATATAAGGTAAATGTCAATCTGATTTGTTCTTTATATATATTGAT
TAGAATGCTCACACTATCTGATTAATTTATTATAACTATAAAAAATCAGA
TATCATAAGCATTCATATATATTATTTGAATGTAAGAGGCCAAGAAATTA
ATTTGAGGAATATTAAAAAATCATGAAAATCTAATTAGTTGTTAGAGGTT
GCGTTATAATTTAAGTAAAGGACTGTTACAACTAAATAAGGTTCACGATA
AAAAATATATTTCATTTGGCAACTCTTATTTTGTATAAACAAAATTGTAA
ACAAACATAGTCAACACACGGGGAAGTTGATTGTTTATTAATAAATAATA
AAATTAATTATTAATTTTTATACTTTAATAATATAATCGAAATGTCTCTC
CGCACTAGTTTATCCACCTTGTGTAGACGACTGTCTCTTCGACATCCATC
ATCACGTCTACCCTCTAGTGCAGCTTTTTCCTCAGAGTCGGCTCCRGCTC
AGGAAGAAAAGACTCCGGAAAAGAAATCATCTTCCTTTGCTTCCCMCCTA
CGCCAATCATCATGGATCCAAATGGGTGATCCCAAGGGCAAGGTAATATC
TGAAGTGATAACTAATAAATAGATCCATCATCATTTGTAATATCACCACT
AGGTTGTCGTTGGAGAAGTATATCACGTTATAGAAGACGATTTGTATATT
GACATTGGCCATAAATTCCCCTGCGTGTGTCGTAAGCCTCGAAATAACTC
CGAAAATTTCCGTCGGGGTGTAAAAGTGAGAGTTCTGATCAAATCTCTGG
AATTGTCTCAAAAGTTTCTGGGTTATGAGAATGAAATGACGCTAATGGAG
GCGGATGGTGTCCTTCTTGGCCTCTACTCCAAATCTTCTTCATGA

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