EMLSAG00000000320, EMLSAG00000000320-683086 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000320
Unique NameEMLSAG00000000320-683086
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000320 vs. GO
Match: - (symbol:Mrps28 "mitochondrial ribosomal protein S28" species:10116 "Rattus norvegicus" [GO:0005739 "mitochondrion" evidence=IEA;ISO] [GO:0044822 "poly(A) RNA binding" evidence=ISO] RGD:1597461 GO:GO:0005739 CTD:28957 eggNOG:NOG245406 GeneTree:ENSGT00390000001057 KO:K17407 OrthoDB:EOG7288SV TreeFam:TF315097 InterPro:IPR019375 Pfam:PF10246 EMBL:AABR06014818 EMBL:AY383686 RefSeq:NP_001041374.1 UniGene:Rn.12952 STRING:10116.ENSRNOP00000042427 Ensembl:ENSRNOT00000046368 GeneID:689025 KEGG:rno:689025 UCSC:RGD:1597461 NextBio:737746 Genevestigator:Q6TXG8 Uniprot:Q6TXG8)

HSP 1 Score: 50.447 bits (119), Expect = 3.053e-7
Identity = 21/42 (50.00%), Postives = 30/42 (71.43%), Query Frame = 0 
Query:   24 PDKDFHSIVVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSE 65
            P KD    +V+G ++H++EDDLYID G KF CVC++P  + E
Sbjct:   92 PAKDK---LVIGRIFHIVEDDLYIDFGGKFHCVCKRPDVDGE 130
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BLAST of EMLSAG00000000320 vs. C. finmarchicus
Match: gi|592792462|gb|GAXK01162106.1| (TSA: Calanus finmarchicus comp35785_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 98.5969 bits (244), Expect = 1.269e-25
Identity = 43/75 (57.33%), Postives = 59/75 (78.67%), Query Frame = 0 
Query:   32 VVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVLLGLY 106
             VVG +YHV+ DDLYID GHKF CVC KPR     + RG +V++ +KSLELS++FLGY+ +++L+EAD VLLG++
Sbjct:   52 TVVGRIYHVVGDDLYIDFGHKFGCVCTKPREGRGYYIRGTEVKLKVKSLELSERFLGYDRDISLLEADCVLLGIH 276
[Close]
BLAST of EMLSAG00000000320 vs. C. finmarchicus
Match: gi|592810038|gb|GAXK01144530.1| (TSA: Calanus finmarchicus comp366026_c0_seq7 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 5.257e+0
Identity = 14/33 (42.42%), Postives = 20/33 (60.61%), Query Frame = 0 
Query:   32 VVVGEVYHVIEDDLYIDIGHKFPC-VCRKPRNN 63
            + +GE+   +ED+   DI +  PC VC K RNN
Sbjct: 1958 LALGEILKCLEDECQDDILYPPPCKVCLKVRNN 2056
[Close]
BLAST of EMLSAG00000000320 vs. C. finmarchicus
Match: gi|592810039|gb|GAXK01144529.1| (TSA: Calanus finmarchicus comp366026_c0_seq6 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 5.259e+0
Identity = 14/33 (42.42%), Postives = 20/33 (60.61%), Query Frame = 0 
Query:   32 VVVGEVYHVIEDDLYIDIGHKFPC-VCRKPRNN 63
            + +GE+   +ED+   DI +  PC VC K RNN
Sbjct: 1976 LALGEILKCLEDECQDDILYPPPCKVCLKVRNN 2074
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BLAST of EMLSAG00000000320 vs. C. finmarchicus
Match: gi|592810040|gb|GAXK01144528.1| (TSA: Calanus finmarchicus comp366026_c0_seq5 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 5.263e+0
Identity = 14/33 (42.42%), Postives = 20/33 (60.61%), Query Frame = 0 
Query:   32 VVVGEVYHVIEDDLYIDIGHKFPC-VCRKPRNN 63
            + +GE+   +ED+   DI +  PC VC K RNN
Sbjct: 2016 LALGEILKCLEDECQDDILYPPPCKVCLKVRNN 2114
[Close]
BLAST of EMLSAG00000000320 vs. C. finmarchicus
Match: gi|592810043|gb|GAXK01144525.1| (TSA: Calanus finmarchicus comp366026_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 5.278e+0
Identity = 14/33 (42.42%), Postives = 20/33 (60.61%), Query Frame = 0 
Query:   32 VVVGEVYHVIEDDLYIDIGHKFPC-VCRKPRNN 63
            + +GE+   +ED+   DI +  PC VC K RNN
Sbjct: 2163 LALGEILKCLEDECQDDILYPPPCKVCLKVRNN 2261
[Close]
BLAST of EMLSAG00000000320 vs. C. finmarchicus
Match: gi|592810041|gb|GAXK01144527.1| (TSA: Calanus finmarchicus comp366026_c0_seq4 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 5.591e+0
Identity = 14/33 (42.42%), Postives = 20/33 (60.61%), Query Frame = 0 
Query:   32 VVVGEVYHVIEDDLYIDIGHKFPC-VCRKPRNN 63
            + +GE+   +ED+   DI +  PC VC K RNN
Sbjct: 1976 LALGEILKCLEDECQDDILYPPPCKVCLKVRNN 2074
[Close]
BLAST of EMLSAG00000000320 vs. C. finmarchicus
Match: gi|592810042|gb|GAXK01144526.1| (TSA: Calanus finmarchicus comp366026_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 5.595e+0
Identity = 14/33 (42.42%), Postives = 20/33 (60.61%), Query Frame = 0 
Query:   32 VVVGEVYHVIEDDLYIDIGHKFPC-VCRKPRNN 63
            + +GE+   +ED+   DI +  PC VC K RNN
Sbjct: 2016 LALGEILKCLEDECQDDILYPPPCKVCLKVRNN 2114
[Close]
BLAST of EMLSAG00000000320 vs. C. finmarchicus
Match: gi|592810044|gb|GAXK01144524.1| (TSA: Calanus finmarchicus comp366026_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 5.610e+0
Identity = 14/33 (42.42%), Postives = 20/33 (60.61%), Query Frame = 0 
Query:   32 VVVGEVYHVIEDDLYIDIGHKFPC-VCRKPRNN 63
            + +GE+   +ED+   DI +  PC VC K RNN
Sbjct: 2163 LALGEILKCLEDECQDDILYPPPCKVCLKVRNN 2261
[Close]
BLAST of EMLSAG00000000320 vs. C. finmarchicus
Match: gi|592847303|gb|GAXK01110241.1| (TSA: Calanus finmarchicus comp6640149_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 5.806e+0
Identity = 13/51 (25.49%), Postives = 28/51 (54.90%), Query Frame = 0 
Query:   52 KFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVL 102
            +F C    P  + +   +  +V+    S+ L+ K+  YEN +T++E+D ++
Sbjct:  166 EFACAVWTPGISKDEINQIERVQKAAFSIILANKYKSYENALTVLESDTLM 318
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BLAST of EMLSAG00000000320 vs. C. finmarchicus
Match: gi|592810029|gb|GAXK01144539.1| (TSA: Calanus finmarchicus comp366026_c0_seq16 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 6.157e+0
Identity = 14/35 (40.00%), Postives = 20/35 (57.14%), Query Frame = 0 
Query:   31 IVVVGEVYHVIEDDLYIDIGHKFPC-VCRKPRNNS 64
             + +GE+   +ED+   DI +  PC VC K RNN 
Sbjct: 1955 CLALGEILKCLEDECQDDILYPPPCKVCLKVRNNP 2059
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BLAST of EMLSAG00000000320 vs. L. salmonis peptides
Match: EMLSAP00000000320 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1049:49286:50380:-1 gene:EMLSAG00000000320 transcript:EMLSAT00000000320 description:"maker-LSalAtl2s1049-snap-gene-0.30")

HSP 1 Score: 228.409 bits (581), Expect = 3.466e-78
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0 
Query:    1 FIFSLFARKNKIIPRGFSLVIWTPDKDFHSIVVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVLLGLYSKSSS 111
            FIFSLFARKNKIIPRGFSLVIWTPDKDFHSIVVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVLLGLYSKSSS
Sbjct:    1 FIFSLFARKNKIIPRGFSLVIWTPDKDFHSIVVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVLLGLYSKSSS 111
[Close]
BLAST of EMLSAG00000000320 vs. SwissProt
Match: gi|22001972|sp|Q9CY16.1|RT28_MOUSE (RecName: Full=28S ribosomal protein S28, mitochondrial; Short=MRP-S28; Short=S28mt; Flags: Precursor)

HSP 1 Score: 92.0485 bits (227), Expect = 1.485e-23
Identity = 41/87 (47.13%), Postives = 60/87 (68.97%), Query Frame = 0 
Query:   19 LVIWTPDKDFHSIVVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVLLGL 105
            L    P KD    +V+G ++H++EDDLYID G KF CVC++P  + E ++RG +VR+ +  LEL+ +FLG   + T++EAD VLLGL
Sbjct:   88 LTQLGPAKD---KLVIGRIFHIVEDDLYIDFGGKFHCVCKRPDVDGEKYQRGTRVRLRLLDLELTSRFLGGTTDTTILEADAVLLGL 171
[Close]
BLAST of EMLSAG00000000320 vs. SwissProt
Match: gi|109940163|sp|P82928.2|RT28_BOVIN (RecName: Full=28S ribosomal protein S28, mitochondrial; Short=MRP-S28; Short=S28mt; Flags: Precursor)

HSP 1 Score: 88.9669 bits (219), Expect = 2.563e-22
Identity = 39/93 (41.94%), Postives = 61/93 (65.59%), Query Frame = 0 
Query:   19 LVIWTPDKDFHSIVVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVLLGLYSKSSS 111
            L    P KD    +V+G ++H++E+DLYID G KF CVC++P  + E +++G +VR+ +  LEL+ +FLG   + T++EA+ VLLGL     S
Sbjct:   90 LTQMGPAKD---KIVIGRIFHIVENDLYIDFGGKFHCVCKRPEVDGEKYQKGTRVRLRLLDLELTSRFLGATTDTTILEAEAVLLGLQESKDS 179
[Close]
BLAST of EMLSAG00000000320 vs. SwissProt
Match: gi|22001973|sp|Q9Y2Q9.1|RT28_HUMAN (RecName: Full=28S ribosomal protein S28, mitochondrial; Short=MRP-S28; Short=S28mt; AltName: Full=28S ribosomal protein S35, mitochondrial; Short=MRP-S35; Short=S35mt; Flags: Precursor)

HSP 1 Score: 88.1965 bits (217), Expect = 4.150e-22
Identity = 39/93 (41.94%), Postives = 61/93 (65.59%), Query Frame = 0 
Query:   19 LVIWTPDKDFHSIVVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVLLGLYSKSSS 111
            L    P KD    +V+G ++H++E+DLYID G KF CVCR+P  + E +++G +VR+ +  LEL+ +FLG   + T++EA+ VLLG+     S
Sbjct:   89 LTQMGPAKD---KLVIGRIFHIVENDLYIDFGGKFHCVCRRPEVDGEKYQKGTRVRLRLLDLELTSRFLGATTDTTVLEANAVLLGIQESKDS 178
[Close]
BLAST of EMLSAG00000000320 vs. Select Arthropod Genomes
Match: gb|EFA00128.1| (28S ribosomal protein S28, mitochondrial-like Protein [Tribolium castaneum])

HSP 1 Score: 105.916 bits (263), Expect = 1.628e-29
Identity = 51/84 (60.71%), Postives = 61/84 (72.62%), Query Frame = 0 
Query:   27 DFHSIVVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVLLGLYSKSS 110
            D    VV G V+HV++DDLYID G KF CVC +PR N+  + RG KVR+LIK LELS KFLGYE ++TL+EAD VLLGL    S
Sbjct:   79 DPEGKVVTGRVFHVVDDDLYIDFGWKFHCVCPRPRRNASEYVRGSKVRILIKELELSSKFLGYEKDITLLEADCVLLGLVQDRS 162
[Close]
BLAST of EMLSAG00000000320 vs. Select Arthropod Genomes
Match: XP_001121371.2 (PREDICTED: 28S ribosomal protein S28, mitochondrial [Apis mellifera])

HSP 1 Score: 98.2117 bits (243), Expect = 2.175e-26
Identity = 43/80 (53.75%), Postives = 62/80 (77.50%), Query Frame = 0 
Query:   32 VVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVLLGLYSKSSS 111
            VV+GE++H++ +DLYID G KF CVC +P+ NS  ++RG KV++LIK LELS +FLG   ++T++EAD +LLGL   SS+
Sbjct:   98 VVLGEIFHIVNNDLYIDFGWKFHCVCPRPQKNSLQYKRGSKVKLLIKDLELSTRFLGASTDLTMLEADCILLGLVYTSSN 177
[Close]
BLAST of EMLSAG00000000320 vs. Select Arthropod Genomes
Match: EEB19926.1 (mitochondrial 28S ribosomal protein S28, putative [Pediculus humanus corporis])

HSP 1 Score: 95.1301 bits (235), Expect = 4.974e-25
Identity = 48/85 (56.47%), Postives = 63/85 (74.12%), Query Frame = 0 
Query:   27 DFHSIVVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVLLG-LYSKSS 110
            D    +V+G +YHV+++DLYID G KFP VC+KP+  SE +  GVKVR+LIK LELS KF+  + E+TL EAD VLLG L +KS+
Sbjct:   89 DPEGKIVIGTIYHVMDNDLYIDFGWKFPTVCQKPQKFSEQYYPGVKVRLLIKDLELSTKFINTDKEITLNEADCVLLGRLNTKSN 173
[Close]
BLAST of EMLSAG00000000320 vs. Select Arthropod Genomes
Match: EAA10773.3 (AGAP006650-PA [Anopheles gambiae str. PEST])

HSP 1 Score: 94.7449 bits (234), Expect = 6.019e-25
Identity = 41/85 (48.24%), Postives = 60/85 (70.59%), Query Frame = 0 
Query:   27 DFHSIVVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVLLGLYSKSSS 111
            D    +V G+++H++E+DLYID G KF CVC +P  N E++ RG +VR+ +K LELS +FLG   ++TL+EAD  LLGL S  ++
Sbjct:   90 DPEGKIVTGKIFHIVENDLYIDFGWKFHCVCTRPAKNGEDYVRGARVRLRVKDLELSTRFLGSNKDLTLLEADCQLLGLISSPAT 174
[Close]
BLAST of EMLSAG00000000320 vs. Select Arthropod Genomes
Match: AAF57671.2 (mitochondrial ribosomal protein S28 [Drosophila melanogaster])

HSP 1 Score: 92.0485 bits (227), Expect = 8.755e-24
Identity = 42/76 (55.26%), Postives = 56/76 (73.68%), Query Frame = 0 
Query:   32 VVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVLLGLYS 107
            VV G+++HV+ DDLYID G KF CVC +P  N+ ++ RG +VR+ IK LELS KFLG   ++T++EAD  LLGL S
Sbjct:  101 VVSGKIFHVVGDDLYIDFGWKFHCVCSRPTRNASDYVRGARVRLRIKDLELSTKFLGSSKDITILEADCHLLGLLS 176
[Close]
BLAST of EMLSAG00000000320 vs. Select Arthropod Genomes
Match: EFX67560.1 (hypothetical protein DAPPUDRAFT_63835 [Daphnia pulex])

HSP 1 Score: 89.7373 bits (221), Expect = 1.563e-23
Identity = 47/107 (43.93%), Postives = 62/107 (57.94%), Query Frame = 0 
Query:    3 FSLFARKNKIIPRGFSLVIWTPDKDFHSIVVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVLLGLYSKS 109
            F+   R +K+I  G          D    +V G+++ V+ +DLYID G KF CVC KP  N   F RG +VR+ ++ LELS KFLG   E+TL EAD +LLGL   S
Sbjct:   37 FATLLRHSKLIQLG----------DPQGKIVEGKIFQVVGNDLYIDFGGKFHCVCSKPNANESEFVRGSRVRLRLQELELSTKFLGASQELTLREADALLLGLARTS 133
[Close]
BLAST of EMLSAG00000000320 vs. Select Arthropod Genomes
Match: EFX65368.1 (hypothetical protein DAPPUDRAFT_65530 [Daphnia pulex])

HSP 1 Score: 89.7373 bits (221), Expect = 1.563e-23
Identity = 47/107 (43.93%), Postives = 62/107 (57.94%), Query Frame = 0 
Query:    3 FSLFARKNKIIPRGFSLVIWTPDKDFHSIVVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVLLGLYSKS 109
            F+   R +K+I  G          D    +V G+++ V+ +DLYID G KF CVC KP  N   F RG +VR+ ++ LELS KFLG   E+TL EAD +LLGL   S
Sbjct:   37 FATLLRHSKLIQLG----------DPQGKIVEGKIFQVVGNDLYIDFGGKFHCVCSKPNANESEFVRGSRVRLRLQELELSTKFLGASQELTLREADALLLGLARTS 133
[Close]
BLAST of EMLSAG00000000320 vs. Select Arthropod Genomes
Match: gb|KPM05270.1| (28S ribosomal protein S28, mitochondrial-like protein [Sarcoptes scabiei])

HSP 1 Score: 79.337 bits (194), Expect = 2.738e-19
Identity = 31/75 (41.33%), Postives = 55/75 (73.33%), Query Frame = 0 
Query:   32 VVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVLLGLY 106
            ++VGE+ +V+++D+YID G KF  +C+ P+N  +N+ +G ++++ +  LELS +FLG   +MTL+EAD  L+ L+
Sbjct:   66 ILVGEIVNVVDNDVYIDFGFKFLSICKLPKNQMKNYIKGARIKLKLNDLELSDRFLGSNQDMTLLEADATLIRLH 140
[Close]
BLAST of EMLSAG00000000320 vs. Select Arthropod Genomes
Match: gb|KFM73332.1| (28S ribosomal protein S28, mitochondrial, partial [Stegodyphus mimosarum])

HSP 1 Score: 51.2174 bits (121), Expect = 1.199e-8
Identity = 21/39 (53.85%), Postives = 27/39 (69.23%), Query Frame = 0 
Query:   27 DFHSIVVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSE 65
            D     V+G+++ V+  DLYID G KF CVCRKP+ NSE
Sbjct:   91 DPRGKTVIGKIFQVVNTDLYIDFGGKFYCVCRKPKRNSE 129
[Close]
BLAST of EMLSAG00000000320 vs. nr
Match: gi|290562245|gb|ADD38519.1| (28S ribosomal protein S28, mitochondrial [Lepeophtheirus salmonis])

HSP 1 Score: 168.703 bits (426), Expect = 9.631e-52
Identity = 82/90 (91.11%), Postives = 82/90 (91.11%), Query Frame = 0 
Query:   22 WTPDKDFHSIVVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVLLGLYSKSSS 111
            W    D    VVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVLLGLYSKSSS
Sbjct:   58 WIQMGDPKGKVVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVLLGLYSKSSS 147
[Close]
BLAST of EMLSAG00000000320 vs. nr
Match: gi|1059395166|ref|XP_017771161.1| (PREDICTED: 28S ribosomal protein S28, mitochondrial [Nicrophorus vespilloides])

HSP 1 Score: 106.686 bits (265), Expect = 4.064e-27
Identity = 52/105 (49.52%), Postives = 70/105 (66.67%), Query Frame = 0 
Query:   11 KIIPRGFSLVIWTPD----KDFHSIVVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVLLGLYSKSSS 111
            K  P+ FS ++         D    VV G VYHV+EDDLYID G KF CVC +P+ N +NF RG +VR+++K LELS +FLG++ ++TL+EAD VLLGL  +  S
Sbjct:   60 KAAPKSFSSLLRNSKFIDMGDPEGKVVTGTVYHVVEDDLYIDFGWKFHCVCPRPKKNGDNFVRGSRVRLMVKDLELSSRFLGFDKDLTLLEADCVLLGLSQERQS 164
[Close]
BLAST of EMLSAG00000000320 vs. nr
Match: gi|270003680|gb|EFA00128.1| (28S ribosomal protein S28, mitochondrial-like Protein [Tribolium castaneum])

HSP 1 Score: 105.916 bits (263), Expect = 7.968e-27
Identity = 51/84 (60.71%), Postives = 61/84 (72.62%), Query Frame = 0 
Query:   27 DFHSIVVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVLLGLYSKSS 110
            D    VV G V+HV++DDLYID G KF CVC +PR N+  + RG KVR+LIK LELS KFLGYE ++TL+EAD VLLGL    S
Sbjct:   79 DPEGKVVTGRVFHVVDDDLYIDFGWKFHCVCPRPRRNASEYVRGSKVRILIKELELSSKFLGYEKDITLLEADCVLLGLVQDRS 162
[Close]
BLAST of EMLSAG00000000320 vs. nr
Match: gi|1133418955|ref|XP_019865012.1| (PREDICTED: 28S ribosomal protein S28, mitochondrial [Aethina tumida])

HSP 1 Score: 105.916 bits (263), Expect = 8.125e-27
Identity = 49/84 (58.33%), Postives = 63/84 (75.00%), Query Frame = 0 
Query:   27 DFHSIVVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVLLGLYSKSS 110
            D    VVVG+++H +EDDLYID G KF CVC +P+ N  ++ RG KVR++IK LELS KFLGYE ++TL+EAD VLLGL  + S
Sbjct:   83 DPEGKVVVGKIFHTVEDDLYIDFGWKFHCVCPRPKKNGSSYVRGSKVRLMIKDLELSSKFLGYEKDLTLLEADCVLLGLIQERS 166
[Close]
BLAST of EMLSAG00000000320 vs. nr
Match: gi|642916266|ref|XP_974639.2| (PREDICTED: 28S ribosomal protein S28, mitochondrial [Tribolium castaneum])

HSP 1 Score: 105.916 bits (263), Expect = 8.224e-27
Identity = 51/84 (60.71%), Postives = 61/84 (72.62%), Query Frame = 0 
Query:   27 DFHSIVVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVLLGLYSKSS 110
            D    VV G V+HV++DDLYID G KF CVC +PR N+  + RG KVR+LIK LELS KFLGYE ++TL+EAD VLLGL    S
Sbjct:   81 DPEGKVVTGRVFHVVDDDLYIDFGWKFHCVCPRPRRNASEYVRGSKVRILIKELELSSKFLGYEKDITLLEADCVLLGLVQDRS 164
[Close]
BLAST of EMLSAG00000000320 vs. nr
Match: gi|662202361|ref|XP_008474474.1| (PREDICTED: 28S ribosomal protein S28, mitochondrial [Diaphorina citri])

HSP 1 Score: 105.145 bits (261), Expect = 9.695e-27
Identity = 43/83 (51.81%), Postives = 65/83 (78.31%), Query Frame = 0 
Query:   27 DFHSIVVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVLLGLYSKS 109
            D  + +V G+++HV++DDLYID G KFPCVC +PR N+E + RG +VR+++K LELS KFLG E ++T++EAD +LLG+  ++
Sbjct:   58 DAENKLVYGKIFHVVDDDLYIDFGGKFPCVCTRPRKNAEEYVRGARVRLILKDLELSTKFLGSEKDLTILEADAILLGVVKRN 140
[Close]
BLAST of EMLSAG00000000320 vs. nr
Match: gi|1070183054|ref|XP_018365460.1| (PREDICTED: 28S ribosomal protein S28, mitochondrial [Trachymyrmex cornetzi] >gi|1009397528|gb|KYN18039.1| 28S ribosomal protein S28, mitochondrial [Trachymyrmex cornetzi])

HSP 1 Score: 103.219 bits (256), Expect = 2.812e-25
Identity = 48/81 (59.26%), Postives = 60/81 (74.07%), Query Frame = 0 
Query:   27 DFHSIVVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVLLGLYS 107
            D    VV+GE+YHV+ DDLYID G KFPCVC++P  N + + RG KVR+ IK LELS KFLG E ++TL+EAD  L+GL S
Sbjct:  111 DPEGKVVIGEIYHVVGDDLYIDFGWKFPCVCQRPVKNGQYYVRGSKVRLRIKDLELSSKFLGAETDVTLLEADCTLIGLIS 191
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BLAST of EMLSAG00000000320 vs. nr
Match: gi|1073700423|gb|JAT93268.1| (putative mitochondrial ribosomal protein mrps35 [Amblyomma aureolatum])

HSP 1 Score: 102.064 bits (253), Expect = 3.819e-25
Identity = 45/97 (46.39%), Postives = 65/97 (67.01%), Query Frame = 0 
Query:   14 PRGFSLVI----WTPDKDFHSIVVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVLLGLY 106
            P+ FS ++    W    D    +V+G ++H++EDDLYID G KF CVCR+P  NS  + RG +VR+ +  +E+S +FLG E ++TL+EAD  LLGLY
Sbjct:   73 PQRFSTLLRNSKWIDLGDPEGRIVIGRIFHIVEDDLYIDFGGKFHCVCRRPARNSGEYIRGARVRLRLNDMEMSSRFLGAEKDLTLLEADATLLGLY 169
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BLAST of EMLSAG00000000320 vs. nr
Match: gi|1080052173|ref|XP_018567624.1| (PREDICTED: 28S ribosomal protein S28, mitochondrial [Anoplophora glabripennis] >gi|1080052175|ref|XP_018567626.1| PREDICTED: 28S ribosomal protein S28, mitochondrial [Anoplophora glabripennis])

HSP 1 Score: 101.679 bits (252), Expect = 4.812e-25
Identity = 44/79 (55.70%), Postives = 60/79 (75.95%), Query Frame = 0 
Query:   32 VVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVLLGLYSKSS 110
            +V+G+++HV+EDDLYID G KF CVC +P  N+ N+ RG +VR+ I  LELS KFLGYE ++TL+EAD  LLGL  + +
Sbjct:   88 IVIGKIFHVVEDDLYIDFGWKFHCVCPRPTKNASNYVRGAEVRLRINDLELSSKFLGYEKDLTLLEADCTLLGLVQQRT 166
[Close]
BLAST of EMLSAG00000000320 vs. nr
Match: gi|1035624963|ref|XP_016920531.1| (PREDICTED: 28S ribosomal protein S28, mitochondrial [Apis cerana])

HSP 1 Score: 99.7525 bits (247), Expect = 2.645e-24
Identity = 44/79 (55.70%), Postives = 61/79 (77.22%), Query Frame = 0 
Query:   32 VVVGEVYHVIEDDLYIDIGHKFPCVCRKPRNNSENFRRGVKVRVLIKSLELSQKFLGYENEMTLMEADGVLLGLYSKSS 110
            VV+GE++H++ +DLYID G KF CVC +P+ NS  +RRG KV++LIK LELS +FLG   ++T++EAD +LLGL   SS
Sbjct:   93 VVLGEIFHIVNNDLYIDFGWKFHCVCPRPQKNSSQYRRGSKVKLLIKDLELSTRFLGASTDLTMLEADCILLGLVHISS 171
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000320 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 11
Match NameE-valueIdentityDescription
-3.053e-750.00symbol:Mrps28 "mitochondrial ribosomal protein S28... [more]

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BLAST of EMLSAG00000000320 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 14
Match NameE-valueIdentityDescription
gi|592792462|gb|GAXK01162106.1|1.269e-2557.33TSA: Calanus finmarchicus comp35785_c0_seq1 transc... [more]
gi|592810038|gb|GAXK01144530.1|5.257e+042.42TSA: Calanus finmarchicus comp366026_c0_seq7 trans... [more]
gi|592810039|gb|GAXK01144529.1|5.259e+042.42TSA: Calanus finmarchicus comp366026_c0_seq6 trans... [more]
gi|592810040|gb|GAXK01144528.1|5.263e+042.42TSA: Calanus finmarchicus comp366026_c0_seq5 trans... [more]
gi|592810043|gb|GAXK01144525.1|5.278e+042.42TSA: Calanus finmarchicus comp366026_c0_seq2 trans... [more]
gi|592810041|gb|GAXK01144527.1|5.591e+042.42TSA: Calanus finmarchicus comp366026_c0_seq4 trans... [more]
gi|592810042|gb|GAXK01144526.1|5.595e+042.42TSA: Calanus finmarchicus comp366026_c0_seq3 trans... [more]
gi|592810044|gb|GAXK01144524.1|5.610e+042.42TSA: Calanus finmarchicus comp366026_c0_seq1 trans... [more]
gi|592847303|gb|GAXK01110241.1|5.806e+025.49TSA: Calanus finmarchicus comp6640149_c0_seq1 tran... [more]
gi|592810029|gb|GAXK01144539.1|6.157e+040.00TSA: Calanus finmarchicus comp366026_c0_seq16 tran... [more]

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BLAST of EMLSAG00000000320 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000003203.466e-78100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1049:4928... [more]
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BLAST of EMLSAG00000000320 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
gi|22001972|sp|Q9CY16.1|RT28_MOUSE1.485e-2347.13RecName: Full=28S ribosomal protein S28, mitochond... [more]
gi|109940163|sp|P82928.2|RT28_BOVIN2.563e-2241.94RecName: Full=28S ribosomal protein S28, mitochond... [more]
gi|22001973|sp|Q9Y2Q9.1|RT28_HUMAN4.150e-2241.94RecName: Full=28S ribosomal protein S28, mitochond... [more]
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BLAST of EMLSAG00000000320 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 9
Match NameE-valueIdentityDescription
gb|EFA00128.1|1.628e-2960.7128S ribosomal protein S28, mitochondrial-like Prot... [more]
XP_001121371.22.175e-2653.75PREDICTED: 28S ribosomal protein S28, mitochondria... [more]
EEB19926.14.974e-2556.47mitochondrial 28S ribosomal protein S28, putative ... [more]
EAA10773.36.019e-2548.24AGAP006650-PA [Anopheles gambiae str. PEST][more]
AAF57671.28.755e-2455.26mitochondrial ribosomal protein S28 [Drosophila me... [more]
EFX67560.11.563e-2343.93hypothetical protein DAPPUDRAFT_63835 [Daphnia pul... [more]
EFX65368.11.563e-2343.93hypothetical protein DAPPUDRAFT_65530 [Daphnia pul... [more]
gb|KPM05270.1|2.738e-1941.3328S ribosomal protein S28, mitochondrial-like prot... [more]
gb|KFM73332.1|1.199e-853.8528S ribosomal protein S28, mitochondrial, partial ... [more]
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BLAST of EMLSAG00000000320 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 25
Match NameE-valueIdentityDescription
gi|290562245|gb|ADD38519.1|9.631e-5291.1128S ribosomal protein S28, mitochondrial [Lepeopht... [more]
gi|1059395166|ref|XP_017771161.1|4.064e-2749.52PREDICTED: 28S ribosomal protein S28, mitochondria... [more]
gi|270003680|gb|EFA00128.1|7.968e-2760.7128S ribosomal protein S28, mitochondrial-like Prot... [more]
gi|1133418955|ref|XP_019865012.1|8.125e-2758.33PREDICTED: 28S ribosomal protein S28, mitochondria... [more]
gi|642916266|ref|XP_974639.2|8.224e-2760.71PREDICTED: 28S ribosomal protein S28, mitochondria... [more]
gi|662202361|ref|XP_008474474.1|9.695e-2751.81PREDICTED: 28S ribosomal protein S28, mitochondria... [more]
gi|1070183054|ref|XP_018365460.1|2.812e-2559.26PREDICTED: 28S ribosomal protein S28, mitochondria... [more]
gi|1073700423|gb|JAT93268.1|3.819e-2546.39putative mitochondrial ribosomal protein mrps35 [A... [more]
gi|1080052173|ref|XP_018567624.1|4.812e-2555.70PREDICTED: 28S ribosomal protein S28, mitochondria... [more]
gi|1035624963|ref|XP_016920531.1|2.645e-2455.70PREDICTED: 28S ribosomal protein S28, mitochondria... [more]

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BLAST of EMLSAG00000000320 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1049supercontigLSalAtl2s1049:49286..50380 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1049-snap-gene-0.30
Biotypeprotein_coding
EvidenceIEA
Note28S ribosomal protein S28, mitochondrial [Lepeophtheirus salmonis]
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000320 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000320EMLSAT00000000320-696167Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1049:49286..50380-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000320-683086 ID=EMLSAG00000000320-683086|Name=EMLSAG00000000320|organism=Lepeophtheirus salmonis|type=gene|length=1095bp|location=Sequence derived from alignment at LSalAtl2s1049:49286..50380- (Lepeophtheirus salmonis)
TTTATTTTTTCTCTTTTCGCTCGTAAAAATAAAATAATACCGCGAGGTTT
CTCTCTTGTAATATGGACTCCAGACAAAGATTTCCATAGTATAGTATATA
TATTTTCTAGATTTGGGAAATTATACATAACTATACCATTGAAACAATTT
CAATACACTATATTTTTTACTATTAAATAATAAGATTACACTATTGATTT
TCGAAATATAAGGTAAATGTCAATCTGATTTGTTCTTTATATATATTGAT
TAGAATGCTCACACTATCTGATTAATTTATTATAACTATAAAAAATCAGA
TATCATAAGCATTCATATATATTATTTGAATGTAAGAGGCCAAGAAATTA
ATTTGAGGAATATTAAAAAATCATGAAAATCTAATTAGTTGTTAGAGGTT
GCGTTATAATTTAAGTAAAGGACTGTTACAACTAAATAAGGTTCACGATA
AAAAATATATTTCATTTGGCAACTCTTATTTTGTATAAACAAAATTGTAA
ACAAACATAGTCAACACACGGGGAAGTTGATTGTTTATTAATAAATAATA
AAATTAATTATTAATTTTTATACTTTAATAATATAATCGAAATGTCTCTC
CGCACTAGTTTATCCACCTTGTGTAGACGACTGTCTCTTCGACATCCATC
ATCACGTCTACCCTCTAGTGCAGCTTTTTCCTCAGAGTCGGCTCCRGCTC
AGGAAGAAAAGACTCCGGAAAAGAAATCATCTTCCTTTGCTTCCCMCCTA
CGCCAATCATCATGGATCCAAATGGGTGATCCCAAGGGCAAGGTAATATC
TGAAGTGATAACTAATAAATAGATCCATCATCATTTGTAATATCACCACT
AGGTTGTCGTTGGAGAAGTATATCACGTTATAGAAGACGATTTGTATATT
GACATTGGCCATAAATTCCCCTGCGTGTGTCGTAAGCCTCGAAATAACTC
CGAAAATTTCCGTCGGGGTGTAAAAGTGAGAGTTCTGATCAAATCTCTGG
AATTGTCTCAAAAGTTTCTGGGTTATGAGAATGAAATGACGCTAATGGAG
GCGGATGGTGTCCTTCTTGGCCTCTACTCCAAATCTTCTTCATGA
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