EMLSAG00000000354, EMLSAG00000000354-683120 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000354
Unique NameEMLSAG00000000354-683120
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000354 vs. C. finmarchicus
Match: gi|592846186|gb|GAXK01111358.1| (TSA: Calanus finmarchicus comp53898_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 40.817 bits (94), Expect = 1.881e-4
Identity = 19/34 (55.88%), Postives = 23/34 (67.65%), Query Frame = 0 
Query:   39 LDYSFSVNNAGSEPHRLPTANEYMNLLKLAHFEE 72
            LD  F + NAG+E  RLPTA+  MNLLKL  F +
Sbjct:  150 LDPPFCIQNAGTEQERLPTASTCMNLLKLPDFRD 251
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BLAST of EMLSAG00000000354 vs. C. finmarchicus
Match: gi|592846187|gb|GAXK01111357.1| (TSA: Calanus finmarchicus comp53898_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 40.817 bits (94), Expect = 2.335e-4
Identity = 19/34 (55.88%), Postives = 23/34 (67.65%), Query Frame = 0 
Query:   39 LDYSFSVNNAGSEPHRLPTANEYMNLLKLAHFEE 72
            LD  F + NAG+E  RLPTA+  MNLLKL  F +
Sbjct:  150 LDPPFCIQNAGTEQERLPTASTCMNLLKLPDFRD 251
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BLAST of EMLSAG00000000354 vs. L. salmonis peptides
Match: EMLSAP00000000354 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1052:20551:21010:1 gene:EMLSAG00000000354 transcript:EMLSAT00000000354 description:"maker-LSalAtl2s1052-snap-gene-0.5")

HSP 1 Score: 154.066 bits (388), Expect = 4.757e-50
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0 
Query:    1 MNFSGSFPDQKQKLTFPISTIIRILQVDLQLIIQLLNKLDYSFSVNNAGSEPHRLPTANEYMNLLKLAHFEEEKS 75
            MNFSGSFPDQKQKLTFPISTIIRILQVDLQLIIQLLNKLDYSFSVNNAGSEPHRLPTANEYMNLLKLAHFEEEKS
Sbjct:    1 MNFSGSFPDQKQKLTFPISTIIRILQVDLQLIIQLLNKLDYSFSVNNAGSEPHRLPTANEYMNLLKLAHFEEEKS 75
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BLAST of EMLSAG00000000354 vs. L. salmonis peptides
Match: EMLSAP00000003493 (pep:novel supercontig:LSalAtl2s:LSalAtl2s190:418567:426512:1 gene:EMLSAG00000003493 transcript:EMLSAT00000003493 description:"maker-LSalAtl2s190-snap-gene-4.16")

HSP 1 Score: 56.225 bits (134), Expect = 1.395e-10
Identity = 26/37 (70.27%), Postives = 31/37 (83.78%), Query Frame = 0 
Query:   38 KLDYSFSVNNAGSEPHRLPTANEYMNLLKLAHFEEEK 74
            +LD  F V+NAG+EPHRLPTA+  MNLLKL +FEEEK
Sbjct:  961 ELDPPFCVHNAGAEPHRLPTASTCMNLLKLPNFEEEK 997
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000354 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000354 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592846186|gb|GAXK01111358.1|1.881e-455.88TSA: Calanus finmarchicus comp53898_c1_seq2 transc... [more]
gi|592846187|gb|GAXK01111357.1|2.335e-455.88TSA: Calanus finmarchicus comp53898_c1_seq1 transc... [more]
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BLAST of EMLSAG00000000354 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000003544.757e-50100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1052:2055... [more]
EMLSAP000000034931.395e-1070.27pep:novel supercontig:LSalAtl2s:LSalAtl2s190:41856... [more]
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BLAST of EMLSAG00000000354 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000354 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000354 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000354 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1052supercontigLSalAtl2s1052:20551..21010 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1052-snap-gene-0.5
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000354 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000354EMLSAT00000000354-696201Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1052:20551..21010+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000354-683120 ID=EMLSAG00000000354-683120|Name=EMLSAG00000000354|organism=Lepeophtheirus salmonis|type=gene|length=460bp|location=Sequence derived from alignment at LSalAtl2s1052:20551..21010+ (Lepeophtheirus salmonis)
TCACCAATGCCAATAGGACCGAATATATTCATCTTATTGCTCATTATAAG
TTAATAAGCAATTACAATCGAATGTATGTATTTCGATAGGGACTTTCTGA
TCTCATAAACCTTAACAATAATAAGTTCTTTAGTTAAAAGGAACTTCAGT
GGCTCATTTCCGGACCAGAAACAGAAATTGACGTTCCCGATATCTACAAT
CATACGAATTCTACAGGTTGATTTGCAGTTGATCATCCAATTGTGTTATA
TTCTGAAATGCTGTTGAGGCCATGACGAAAACTCAGAAGCGCCATTTCCC
CTAATTTGCTCCTAATTGTTCATGACCTCCTTTATTAAGACTTAATAAGC
TTGATTATTCCTTTAGCGTGAACAACGCAGGTAGTGAACCTCATCGTTTA
CCTACTGCTAATGAATACATGAATCTTTTGAAGCTAGCTCATTTTGAGGA
AGAGAAATCT
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