EMLSAG00000000423, EMLSAG00000000423-683189 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000423
Unique NameEMLSAG00000000423-683189
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000000423 vs. C. finmarchicus
Match: gi|592877608|gb|GAXK01080136.1| (TSA: Calanus finmarchicus comp565173_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 8.355e-1
Identity = 14/36 (38.89%), Postives = 19/36 (52.78%), Query Frame = 0 
Query:   18 ILYCDLPPRFYEYSLGIGTASIFISATSNIFSDFRD 53
            I Y  LPP  Y Y  G+G  S     +S++FS  +D
Sbjct:  727 IHYISLPPNPYSYVPGVGYISPAAKPSSHVFSHSQD 834
[Close]
BLAST of EMLSAG00000000423 vs. C. finmarchicus
Match: gi|592832501|gb|GAXK01125043.1| (TSA: Calanus finmarchicus comp24826_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 2.188e+0
Identity = 9/23 (39.13%), Postives = 13/23 (56.52%), Query Frame = 0 
Query:    1 MHWELWSWFWVSTGFYYILYCDL 23
            +HW    WFW+S  F ++  C L
Sbjct:  795 VHWTFAGWFWLSFSFRFLFLCCL 863
[Close]
BLAST of EMLSAG00000000423 vs. L. salmonis peptides
Match: EMLSAP00000000423 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1067:72464:72909:-1 gene:EMLSAG00000000423 transcript:EMLSAT00000000423 description:"snap-LSalAtl2s1067-processed-gene-0.29")

HSP 1 Score: 123.25 bits (308), Expect = 2.028e-38
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0 
Query:    1 MHWELWSWFWVSTGFYYILYCDLPPRFYEYSLGIGTASIFISATSNIFSDFRDAIPHDA 59
            MHWELWSWFWVSTGFYYILYCDLPPRFYEYSLGIGTASIFISATSNIFSDFRDAIPHDA
Sbjct:    1 MHWELWSWFWVSTGFYYILYCDLPPRFYEYSLGIGTASIFISATSNIFSDFRDAIPHDA 59
[Close]
BLAST of EMLSAG00000000423 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold203_size261420-snap-gene-0.15 (protein:Tk10409 transcript:maker-scaffold203_size261420-snap-gene-0.15-mRNA-1 annotation:"hypothetical protein NECAME_08315")

HSP 1 Score: 67.781 bits (164), Expect = 5.634e-16
Identity = 26/57 (45.61%), Postives = 37/57 (64.91%), Query Frame = 0 
Query:    1 MHWELWSWFWVSTGFYYILYCDLPPRFYEYSLGIGTASIFISATSNIFSDFRDAIPH 57
            +HWE W+WFW     Y+   C +PPR+YEY +G+GT SI +   SN+ SD+R  +P 
Sbjct:   81 LHWEAWTWFWCILAGYFSFCCAMPPRYYEYCVGLGTTSIMVCLISNLLSDYRLNLPE 137
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000423 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000423 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592877608|gb|GAXK01080136.1|8.355e-138.89TSA: Calanus finmarchicus comp565173_c1_seq1 trans... [more]
gi|592832501|gb|GAXK01125043.1|2.188e+039.13TSA: Calanus finmarchicus comp24826_c0_seq1 transc... [more]
back to top
BLAST of EMLSAG00000000423 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000004232.028e-38100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1067:7246... [more]
back to top
BLAST of EMLSAG00000000423 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000423 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000423 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000423 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold203_size261420-snap-gene-0.155.634e-1645.61protein:Tk10409 transcript:maker-scaffold203_size2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1067supercontigLSalAtl2s1067:72464..72909 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap-LSalAtl2s1067-processed-gene-0.29
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000423 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000423EMLSAT00000000423-696270Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1067:72464..72909-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000423-683189 ID=EMLSAG00000000423-683189|Name=EMLSAG00000000423|organism=Lepeophtheirus salmonis|type=gene|length=446bp|location=Sequence derived from alignment at LSalAtl2s1067:72464..72909- (Lepeophtheirus salmonis)
ATGCATTGGGAACTTTGGTCATGGTTCTGGGTATCAACTGGATTCTATTA
TATATTGTACTGTGATCTTCCACCTCGATTTTACGAATATTCTTTAGGAA
TAGGGACTGCAAGTATCTTTATCAGTGCGACATCCAATATATTTTCAGAT
TTTAGAGATGCAATTCCACACGGTGAGGATATTGTACCAAAATATTATAT
ATTCAACATGACTCAATATTAATTATACTAGCCAACATATTTTTGCCGTT
GGATTAAAGATATTGTGCTCTTGATTGTTTTACCTTGAGTCACATGAAAT
CGACCTTTATGATCGGATATTTCTGCTGTAGTGGAGGATAGAGKACAACA
ATTTATATAATGTCTGTGAAATTTGATAACTAAATATTTGTTCAAGCAGC
AAATCTTAAATAACTTTTAAAAATTTTATTTTATTAAGATGCTTAA
back to top
Add to Basket