EMLSAG00000000451, EMLSAG00000000451-683217 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000451
Unique NameEMLSAG00000000451-683217
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000451 vs. GO
Match: - (symbol:TSEN54 "Uncharacterized protein" species:9031 "Gallus gallus" [GO:0006388 "tRNA splicing, via endonucleolytic cleavage and ligation" evidence=IEA] GO:GO:0006388 OMA:QISFPNM TreeFam:TF314691 InterPro:IPR024337 InterPro:IPR024336 PANTHER:PTHR21027 Pfam:PF12928 GeneTree:ENSGT00390000004214 OrthoDB:EOG73V6P9 EMBL:AADN03007569 Ensembl:ENSGALT00000013049 Uniprot:F1N9B2)

HSP 1 Score: 48.9062 bits (115), Expect = 2.855e-5
Identity = 33/124 (26.61%), Postives = 60/124 (48.39%), Query Frame = 0 
Query:  160 VKPLLRPEDRTNLGDIYKRLDIFSSS---------KEDMENSVVNDEAIFNVYAPNT--KFKKKSPGNPDYRIAIRSSELDIP-LDMNSLCSSQENTNLIQAVVTPNGSLSFFQFSRINLPTDL 271
            V PLL+PE+ T+L  + +++ +   S         +E +E+  ++    FNVY  +   KFKK +PG P  R+ ++S +  IP L      + Q     +   +  +G ++F+      LP D+
Sbjct:  409 VTPLLQPEEATSLAAVRQQISVLQPSHILDGASWLQEGLESIKID----FNVYQADAVAKFKKTNPGKPYVRMCVQSFDEQIPSLRALKQVTCQSGDVPVVFALVDHGEIAFYSLKEFKLPVDV 528
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BLAST of EMLSAG00000000451 vs. GO
Match: - (symbol:AT3G57360 "AT3G57360" species:3702 "Arabidopsis thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150 "biological_process" evidence=ND] EMBL:CP002686 KO:K15326 InterPro:IPR024337 InterPro:IPR024336 PANTHER:PTHR21027 Pfam:PF12928 EMBL:BT014989 EMBL:BT015676 RefSeq:NP_191295.4 UniGene:At.34839 STRING:3702.AT3G57360.1-P DNASU:824903 EnsemblPlants:AT3G57360.1 GeneID:824903 KEGG:ath:AT3G57360 TAIR:At3g57360 eggNOG:NOG267210 HOGENOM:HOG000070618 OMA:SACAGEC ProtClustDB:CLSN2681551 Genevestigator:Q6DBN3 Uniprot:Q6DBN3)

HSP 1 Score: 45.8246 bits (107), Expect = 1.923e-4
Identity = 31/90 (34.44%), Postives = 47/90 (52.22%), Query Frame = 0 
Query:  188 DMENSVVNDEAIFNVYAPNTKFKKKSPGNPDYRIAIRSSELDIPLDMNSLCSSQENTNLIQAVVT--------PNGSLSFFQFSRINLPT 269
            DM+  + + +A+F+VY PN++FKK SPG P + +A  S   D P        S+E+  ++Q  +           G  SFF FS I+LP 
Sbjct:  175 DMQ--ICDAKAVFDVYLPNSRFKKSSPGEPSF-VACFSG--DSP-------PSKEDIKVLQKRIAAPLTFCHIAQGRASFFSFSSIDLPV 252
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BLAST of EMLSAG00000000451 vs. GO
Match: - (symbol:TSEN54 "Uncharacterized protein" species:9913 "Bos taurus" [GO:0006388 "tRNA splicing, via endonucleolytic cleavage and ligation" evidence=IEA] GO:GO:0006388 CTD:283989 KO:K15326 OMA:QISFPNM TreeFam:TF314691 InterPro:IPR024337 InterPro:IPR024336 PANTHER:PTHR21027 Pfam:PF12928 GeneTree:ENSGT00390000004214 OrthoDB:EOG73V6P9 EMBL:DAAA02049521 RefSeq:NP_001192620.1 UniGene:Bt.58475 Ensembl:ENSBTAT00000001090 GeneID:511091 KEGG:bta:511091 NextBio:20869773 Uniprot:E1BJ21)

HSP 1 Score: 45.4394 bits (106), Expect = 4.108e-4
Identity = 20/45 (44.44%), Postives = 33/45 (73.33%), Query Frame = 0 
Query:    6 LQLSQKDVPLSVQQAYSLFIN-NKCSFNEYQVYSNLNRLGFRLTR 49
            +QL  +D+PLS+Q+AY L +  +  +F +YQV+S+L RLG+ + R
Sbjct:  126 IQLFHQDLPLSIQEAYQLLLTEDTVTFLQYQVFSHLKRLGYVVRR 170
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BLAST of EMLSAG00000000451 vs. GO
Match: - (symbol:Tsen54 "TSEN54 tRNA splicing endonuclease subunit" species:10116 "Rattus norvegicus" [GO:0006388 "tRNA splicing, via endonucleolytic cleavage and ligation" evidence=IEA;ISO] RGD:1597379 EMBL:CH473948 GO:GO:0006388 CTD:283989 KO:K15326 OMA:QISFPNM TreeFam:TF314691 InterPro:IPR024337 InterPro:IPR024336 PANTHER:PTHR21027 Pfam:PF12928 GeneTree:ENSGT00390000004214 OrthoDB:EOG73V6P9 EMBL:AABR06066172 RefSeq:NP_001103046.1 UniGene:Rn.198903 Ensembl:ENSRNOT00000006327 GeneID:690308 KEGG:rno:690308 NextBio:740625 PRO:PR:D3ZZT6 Uniprot:D3ZZT6)

HSP 1 Score: 45.0542 bits (105), Expect = 5.212e-4
Identity = 21/45 (46.67%), Postives = 33/45 (73.33%), Query Frame = 0 
Query:    6 LQLSQKDVPLSVQQAYSLFIN-NKCSFNEYQVYSNLNRLGFRLTR 49
            +QL  +D+PLS+Q+AY L +  +  SF +YQV+S+L RLG+ + R
Sbjct:  126 IQLFYQDLPLSIQEAYQLLLTEDTLSFLQYQVFSHLKRLGYVVRR 170
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BLAST of EMLSAG00000000451 vs. GO
Match: - (symbol:Tsen54 "tRNA splicing endonuclease 54 homolog (S. cerevisiae)" species:10090 "Mus musculus" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006388 "tRNA splicing, via endonucleolytic cleavage and ligation" evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA] MGI:MGI:1923515 GO:GO:0005730 GO:GO:0006397 GO:GO:0006388 EMBL:AL645852 CTD:283989 eggNOG:NOG327149 HOGENOM:HOG000049169 HOVERGEN:HBG061211 KO:K15326 OMA:QISFPNM TreeFam:TF314691 ChiTaRS:TSEN54 InterPro:IPR024337 InterPro:IPR024336 PANTHER:PTHR21027 Pfam:PF12928 EMBL:AK002758 EMBL:AK089005 RefSeq:NP_083833.1 UniGene:Mm.275438 ProteinModelPortal:Q8C2A2 SMR:Q8C2A2 PhosphoSite:Q8C2A2 PRIDE:Q8C2A2 Ensembl:ENSMUST00000021134 Ensembl:ENSMUST00000106481 GeneID:76265 KEGG:mmu:76265 UCSC:uc007miq.1 UCSC:uc011yhp.1 GeneTree:ENSGT00390000004214 InParanoid:B1ATA4 OrthoDB:EOG73V6P9 NextBio:344883 PRO:PR:Q8C2A2 ArrayExpress:Q8C2A2 Bgee:Q8C2A2 Genevestigator:Q8C2A2 Uniprot:Q8C2A2)

HSP 1 Score: 44.669 bits (104), Expect = 5.597e-4
Identity = 21/45 (46.67%), Postives = 33/45 (73.33%), Query Frame = 0 
Query:    6 LQLSQKDVPLSVQQAYSLFIN-NKCSFNEYQVYSNLNRLGFRLTR 49
            +QL  +D+PLS+Q+AY L +  +  SF +YQV+S+L RLG+ + R
Sbjct:  126 IQLFYQDLPLSIQEAYQLLLTEDTLSFLQYQVFSHLKRLGYVVRR 170
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BLAST of EMLSAG00000000451 vs. C. finmarchicus
Match: gi|592798469|gb|GAXK01156099.1| (TSA: Calanus finmarchicus comp284900_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 40.817 bits (94), Expect = 3.847e-3
Identity = 34/119 (28.57%), Postives = 56/119 (47.06%), Query Frame = 0 
Query:  158 GKVKPLLRPEDRTNLGDIYKRLDIFSSSKEDMENSVVNDEAIFNVYAPNTKFKKKSPGNPDYRIAIRSSELDIPLDMNSLCSSQ----ENTNLIQAVVTPNGSLSFFQFSRINLPTDLR 272
            G V PL+ PE   +L ++Y RL +   S    +  V      +++Y     +KK     PDYRI I++    +P +M SL        +    + +VV+  G+++FF   R+ LP   R
Sbjct:   81 GNVGPLISPEMGGSLREVYSRLTMDPPSNTKYKGPVKELVVTYDLYLAE-NYKKSLKTVPDYRIIIQTFSSPLP-NMKSLAMLDKQYPDQVPFLFSVVS-GGTVTFFSVDRVELPRYFR 428
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BLAST of EMLSAG00000000451 vs. L. salmonis peptides
Match: EMLSAP00000000451 (pep:novel supercontig:LSalAtl2s:LSalAtl2s106:202852:203877:1 gene:EMLSAG00000000451 transcript:EMLSAT00000000451 description:"snap_masked-LSalAtl2s106-processed-gene-2.5")

HSP 1 Score: 554.673 bits (1428), Expect = 0.000e+0
Identity = 274/274 (100.00%), Postives = 274/274 (100.00%), Query Frame = 0 
Query:    1 MKHHQLQLSQKDVPLSVQQAYSLFINNKCSFNEYQVYSNLNRLGFRLTRCDQKSEPPSKNSRKRSLPFIPTCSPQIKLPRLKSKGLNIELRPELLPPNTKLSEPVKAVVIPDLEPLHSNYRGLYQVTDFNTPYRKKVPLSVKSSEYDIKSGEVPFSYGKVKPLLRPEDRTNLGDIYKRLDIFSSSKEDMENSVVNDEAIFNVYAPNTKFKKKSPGNPDYRIAIRSSELDIPLDMNSLCSSQENTNLIQAVVTPNGSLSFFQFSRINLPTDLRME 274
            MKHHQLQLSQKDVPLSVQQAYSLFINNKCSFNEYQVYSNLNRLGFRLTRCDQKSEPPSKNSRKRSLPFIPTCSPQIKLPRLKSKGLNIELRPELLPPNTKLSEPVKAVVIPDLEPLHSNYRGLYQVTDFNTPYRKKVPLSVKSSEYDIKSGEVPFSYGKVKPLLRPEDRTNLGDIYKRLDIFSSSKEDMENSVVNDEAIFNVYAPNTKFKKKSPGNPDYRIAIRSSELDIPLDMNSLCSSQENTNLIQAVVTPNGSLSFFQFSRINLPTDLRME
Sbjct:    1 MKHHQLQLSQKDVPLSVQQAYSLFINNKCSFNEYQVYSNLNRLGFRLTRCDQKSEPPSKNSRKRSLPFIPTCSPQIKLPRLKSKGLNIELRPELLPPNTKLSEPVKAVVIPDLEPLHSNYRGLYQVTDFNTPYRKKVPLSVKSSEYDIKSGEVPFSYGKVKPLLRPEDRTNLGDIYKRLDIFSSSKEDMENSVVNDEAIFNVYAPNTKFKKKSPGNPDYRIAIRSSELDIPLDMNSLCSSQENTNLIQAVVTPNGSLSFFQFSRINLPTDLRME 274
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BLAST of EMLSAG00000000451 vs. Select Arthropod Genomes
Match: XP_001121123.2 (PREDICTED: GATA zinc finger domain-containing protein 8 [Apis mellifera])

HSP 1 Score: 55.8398 bits (133), Expect = 5.990e-8
Identity = 32/70 (45.71%), Postives = 44/70 (62.86%), Query Frame = 0 
Query:    6 LQLSQKDVPLSVQQAYSLFINN-KCSFNEYQVYSNLNRLGFRLTRCDQKSEPPSK----NSRKRSLPFIP 70
            L+L+  DV LS+QQAY L I+N +CS  EY+VYS L R G+R+ R    SE  +K    +S+KR +   P
Sbjct:  130 LELTWNDVSLSIQQAYELLIDNIECSLEEYRVYSQLIRHGYRIQRFVYNSEKNAKSDENSSKKRKVIVEP 199
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BLAST of EMLSAG00000000451 vs. nr
Match: gi|1126163416|ref|XP_019641216.1| (PREDICTED: tRNA-splicing endonuclease subunit Sen54-like [Branchiostoma belcheri])

HSP 1 Score: 68.5514 bits (166), Expect = 1.580e-9
Identity = 45/140 (32.14%), Postives = 73/140 (52.14%), Query Frame = 0 
Query:  145 EYDIKSGEVPFSY-GKVKPLLRPEDRTNLGDIYKRLDIFSSSKEDMENSVV-----NDEAIFNVYAPNTKFKKKSPGNPDYRIAIR-----SSELDIPLDMNSLCSSQENTNLIQAVVTPNGSLSFFQFSRINLPTDLRM 273
            E D+    V   + G V PL+RP D T++G I  +L +  +   + E S +       E  ++V+ P++ FKK  PG P+ R+ ++     + EL + + +N L S      L+ AVV  NG +SF+ F+  +LPTD  M
Sbjct:  410 EVDMSDTAVAHLWEGDVTPLVRPSDATDMGTILSKLQVIQNISLEKECSSLPKPDRTLEIAYDVFLPDSHFKKSKPGRPNLRVCVQRFSDAAPELALIVQLNQLSSP---VPLLWAVVD-NGDISFYSFTEADLPTDYHM 545
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BLAST of EMLSAG00000000451 vs. nr
Match: gi|676489909|ref|XP_009065096.1| (hypothetical protein LOTGIDRAFT_229530 [Lottia gigantea] >gi|556095314|gb|ESO83967.1| hypothetical protein LOTGIDRAFT_229530 [Lottia gigantea])

HSP 1 Score: 62.7734 bits (151), Expect = 1.218e-7
Identity = 41/123 (33.33%), Postives = 66/123 (53.66%), Query Frame = 0 
Query:  158 GKVKPLLRPEDRTNLGDIYKRLDIFSSSKE-DMENSVVNDEAI------FNVYAPNTKFKKKSPGNPDYRIAIRSSELDIPLDMNSL--CSSQENTNLIQAVVTPNGSLSFFQFSRINLPTDL 271
            G+V P+LRP D T   +I  +L I     E D E+   +DE +      F+VY PN +FKK  PG P++R+ +  S  D P  + ++  C  ++   +  AV+  NG ++F+ F   +LP D+
Sbjct:  384 GEVTPVLRPTDVTTTANILNKLQIIKLINEVDDESENSSDENLNTTKISFDVYLPNAQFKKSDPGRPNHRVCVTRS-CDEPPSLITINQCYLKDKVPVHWAVI-DNGDVAFYSFQHFSLPIDI 504
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BLAST of EMLSAG00000000451 vs. nr
Match: gi|443688487|gb|ELT91160.1| (hypothetical protein CAPTEDRAFT_229033 [Capitella teleta])

HSP 1 Score: 61.2326 bits (147), Expect = 3.686e-7
Identity = 43/124 (34.68%), Postives = 63/124 (50.81%), Query Frame = 0 
Query:  158 GKVKPLLRPEDRTNLGD---IYKRLDIFS-----SSKEDMENSVVNDEAIFNVYAPNTKFKKKSPGNPDYRIAI-RSSELDIPL-DMNSLCSSQENTNLIQAVVTPNGSLSFFQFSRINLPTDL 271
            GK KPL+     + +GD   +  RL IF         ED          +F+V+ PN  FKK +PG PD R+ + R SE+   L  +  L    E+  L+Q  V  NG ++F+ F++I+LP DL
Sbjct:  340 GKTKPLVD----SVVGDSHQVLSRLQIFKPLILPEKSEDACTPSSPVSPVFDVHLPNANFKKTNPGTPDLRVCVYRQSEMVPDLSQIVKLSELYEDNVLLQWAVVDNGDVAFYSFNQIDLPVDL 459
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000451 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 5
Match NameE-valueIdentityDescription
-2.855e-526.61symbol:TSEN54 "Uncharacterized protein" species:90... [more]
-1.923e-434.44symbol:AT3G57360 "AT3G57360" species:3702 "Arabido... [more]
-4.108e-444.44symbol:TSEN54 "Uncharacterized protein" species:99... [more]
-5.212e-446.67symbol:Tsen54 "TSEN54 tRNA splicing endonuclease s... [more]
-5.597e-446.67symbol:Tsen54 "tRNA splicing endonuclease 54 homol... [more]
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BLAST of EMLSAG00000000451 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592798469|gb|GAXK01156099.1|3.847e-328.57TSA: Calanus finmarchicus comp284900_c1_seq1 trans... [more]
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BLAST of EMLSAG00000000451 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000004510.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s106:20285... [more]
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BLAST of EMLSAG00000000451 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000451 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 1
Match NameE-valueIdentityDescription
XP_001121123.25.990e-845.71PREDICTED: GATA zinc finger domain-containing prot... [more]
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BLAST of EMLSAG00000000451 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 3
Match NameE-valueIdentityDescription
gi|1126163416|ref|XP_019641216.1|1.580e-932.14PREDICTED: tRNA-splicing endonuclease subunit Sen5... [more]
gi|676489909|ref|XP_009065096.1|1.218e-733.33hypothetical protein LOTGIDRAFT_229530 [Lottia gig... [more]
gi|443688487|gb|ELT91160.1|3.686e-734.68hypothetical protein CAPTEDRAFT_229033 [Capitella ... [more]
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BLAST of EMLSAG00000000451 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s106supercontigLSalAtl2s106:202852..203877 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s106-processed-gene-2.5
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000451 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000451EMLSAT00000000451-696298Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s106:202852..203877+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000451-683217 ID=EMLSAG00000000451-683217|Name=EMLSAG00000000451|organism=Lepeophtheirus salmonis|type=gene|length=1026bp|location=Sequence derived from alignment at LSalAtl2s106:202852..203877+ (Lepeophtheirus salmonis)
ATGAGTATTTCATTTATTTATTCGTTTTAATTAATTATTTCAGAACACCA
TCAACTTCAATTATCGCAGAAGGATGTACCACTCTCTGTACAACAAGCTT
ACTCTCTATTTATCAATAATAAATGTTCTTTCAATGAGTATCAAGTTTAT
TCAAATCTTAACCGGCTTGGGTTTCGACTAACTCGATGTGATCAAAAATC
AGAGCCGCCTTCAAAAAATAGTCGTAAACGCTCTCTTCCATTTATTCCGA
CCTGCTCTCCACAAATAAAATTACCACGATTAAAATCAAAGGGATTAAAC
ATAGAACTAAGGCCTGAGCTACTGCCTCCAAATACTAAACTATCTGAACC
TGTTAAAGCAGTCGTCATACCAGACTTGGAACCACTTCATTCTAATTACA
GAGGACTATATCAGGTAACGGATTTTAATACTCCGTATAGAAAGAAAGTT
CCTTTGAGTGTCAAGTCTAGTGAATATGATATTAAGAGTGGCGAAGTACC
TTTTTCTTATGGGAAAGTAAAACCACTTCTCCGACCCGAAGATAGAACAA
ATCTCGGAGATATTTACAAAAGACTTGATATTTTTAGCTCTTCGAAAGAA
GATATGGAGAACAGTGTGGTGAATGATGAAGCCATTTTCAATGTATATGC
TCCAAATACTAAATTCAAGAAGAAATCACCTGGAAATCCAGATTATAGGA
TAGCAATACGTTCAAGTGAATTGGATATCCCATTAGATATGAATTCTTTA
TGTTCATCCCAAGAAAATACAAATTTAATTCAAGCAGTTGTCACACCCAA
TGGATCACTCTCCTTCTTCCAATTTTCGAGGATAAATTTGCCCACTGATC
TCAGAATGGAATGATTTAGAAATATTATCGATTTAATATATTATCTCAAA
TATGACTATATAATACCCATGCATTCCTTTCAGATTAATTTTTATTAAAT
GAAAAGCCGATTGGAAGCCAAAATTAAGTTGATTAGTCTTTTCGTCATAT
ACATAATATGTAACTAAGTTTCAAAA
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